GEISHA - A Chicken Embryo Gene Expression Database
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SMARCA1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Gene
Official SymbolSMARCA1
Official Full NameSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
CGNC ID6391
also known asprobable global transcription activator SNF2L1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAXM_420329
PolypeptideXP_420329
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly36390FBgn0011604
Human6594ENSG00000102038MIM:300012
Mouse93761ENSMUSG00000031099All phenotypic alleles (1):Targeted, other(1) MGI:1935127
Xenopus100101797, 444176492010
Zebrafish559803, 559803ENSDARG00000012776ZDB-GENE-070705-296ZFIN:ZDB-GENE-070705-296
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422358
Ensembl Gene
KEGGgga:422358
GEISHA IdSMARCA1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGCAGTTGCGGAAATGCTGTAAC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGTTCTCGTTTGGGAGGCTCTATCcDNA Template Length860
Forward cDNA Template Probeshow
CCATTCATCATGCTCACTTTTGTTTTTCTCTATAATCTTCACCTTCGAAGTTGTATAAGCTCATCTCTGGTGGTCCATA
GTGAAATTTCTTAAAGAGCTCTCCCCCATTTTCTGCAGTCTTTCATTCATTTCAGCTGTCTTCTTTTCTCCTCTTTCTA
GAATAGTGGTTATGTCTTCTTCCGTCAACTCGCTGTCTTTGGAAGCAAAGACATGTGTAGCTCCATGCCGGATCATTTG
CAGCATTTCATCCTTTGCCAGTTTGTTAGACTGCTGGTCTATGAGCCTCCCTTGTTGTATAACTATAGAGTCCAGCCTC
AGTTTTATTTCAGCTCTTTCTACAATCCTCTCTTCAACAGTATTATCAGTGATTAGTCGGAACACCCGTACTGGTTTCT
TTTGACCAATACGATGCGCACGATCCATGGCTTGCAGATCTACTTGAGGGTTCCAATCTGAATCATAGAGAATAACCAC
ATCAGCAGTTGCCAAATTAATTCCTAGGCCCCCAGCTCTGGTACTCAGCATGAAAATGAATTTACTGCTGTTGGGAGCA
TTAAATGTATCTATTGCTTCCTCTCTTTCTTCATGTGGTGTCTGCCCATCAAGTCGGCAGTACTCGTACCCACGCCACA
TGCAATAATCTTCCAAAATATCCAATAAACGGGTCATCTGACTGAAAAGTAGCACTCTGGAACCTTGCTCTCTGAGTTT
TGCCAGCAGTTTATCCAGAACTAACATTTTACCACTGTTAGTGATGAGATGTGTGTCAGTGGTGTAAGGAGGGCCGGGC
TCAGCACCATCAAACAGGTAAGGATGGTTACAGCATTCCNCCANACNGGNAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Area Pellucida
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 9
stage 10
stage 12
Anterior Intestinal Portal
Area Opaca
Blood Islands
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Spinal Cord
Widespread Expression
 
13-18
stage 13
stage 15
stage 17
Widespread Expression
 
19-24
stage 22
Spinal Cord
 
25-27
stage 26
stage 27
Widespread Expression
 

Mouse

EmageMGI:1935127
MGI GXDMGI:1935127

Frog

Xenbase492010

Fruit Fly

BDGPFBgn0011604

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070705-296
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