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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CHRDL1
chordin like 1

Gene

Official Symbol	CHRDL1
Official Full Name	chordin like 1
CGNC ID	6111
also known as	NRLN1, chordin-like protein 1\|likely ortholog of mouse neuralin 1\|neuralin-1\|neurogenesin-1\|ventroptin
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204171
Polypeptide	NP_989502

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	91851	ENSG00000101938		MIM:300350
Mouse
Xenopus	100144642			484480
Zebrafish

Gene Ontology

Molecular Function
Biological Process	multicellular organismal development
Cellular Component	extracellular region

Links to other databases

Entrez Gene	373985
Ensembl Gene	ENSGALG00000008072
KEGG	gga:373985

Entry 1

GEISHA Id	CHRDL1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-TGGCAAAACATACTCCCACGG-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGCAGTCTCTCTTTCTACTTCCCCCAG-3'	cDNA Template Length	820
Complete cDNA Template Probe	show TGGCAAAACATACTCCCACGGTGAATCTTGGCATCCTAATCTCCGGGCCTTTGGAATTGTAGAGTGTGTGCTGTGTACC TGCAACATCACCAAACAAGAGTGTAAGAAAATTCATTGTCCAGAACAGTATCCCTGCAAATACCCTCAGAAAGTGGAAG GAAAATGCTGTAAAGTCTGTCCAGAAGAAGTGCCAAGTCAAAGCTTTGACAACAAAGATTACTTCTGTGGGAAAGAGAC CTTTCCCGTCTATGAATCCATTTTCACAGAGGAAGGAGAAACCATCAGAAAAATTGCAGTAGAGACTGAAAAACCACCA CAAATAGAAATACATGTGTGGACAATCAGAAAAGGGATTCTCCGTCATTTCTACATTGAGAAAATGTCCAAGAGGGAAT TTGAAGAGCTTCCCTACTTCAAACAGATAACAAGGACAACCTCTAGCCAGTGGAAAATATTTAGCGAGGGAGAAGCTCA GATCAGCCAAATGTGTGAAAGCAGAGTGTGCAGGACTGAACTCGAGGATTTGGTAAAGGTTTTGTACCTTGAGAAGTCT GAAAAGGGTCACTGTTAAGGGAGACAGCACTGGAGGGAGAAACACAAGAAAACTTATGAAAACTTGGATCTGCAGCTGG ACTGCAGGCTTATTTTGCTTAAGTCAACAGTTGCCCTAAAAACCAAAACTATAATGCAGTAATTATTCACATCATGCAC AGCAAATTTGCTGCTTTATGTGTAGTGGTCTGTGTCAATCGTTCAAATATCTCCTCCAAAAGACTAGGAGGCTCTGTGT TACTGCTGGGGGAAGTAGAAAGAGAGACTG

Stage

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Comments (click to highlight)

4-6

stage 6

Unlabeled

7-12

stage 8

stage 9

stage 11

Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Somites
Unlabeled
extraembryonic mesoderm

13-18

stage 17

stage 18

Eye
Head Mesenchyme
Hindbrain
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts

19-24

stage 19

stage 20

Allantois
Ear/Otic Placode
Eye
Foregut
Head Mesenchyme
Leg
Leg Mesenchyme
Lung
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Wing
Wing Mesenchyme

25-26

stage 26

Leg AER
Leg Mesenchyme
Mesonephros
Sclerotome
Spinal Cord
Widespread Expression

Entry 2

GEISHA Id	Ventroptin.Chimal-Monroy.2003	Data Source	Publication
Complete cDNA Template Probe	show GATGAGAAGAAAGTGGAGATCGGAGGATTTTCATTTTGTCTTTTTTGGTGTGCTCTGTCTCCTGCTCATAGACAGAGGT AAACTAGAACAAGTAAAACATTCAGATACATACTGTGTGTTTCAAGACAAGAAGTACCGTGTAGGAGAAAGATGGCACC CTTACCTAGAACCCTACGGGCTTGTTTACTGTGTTAATTGTCTCTGCTCAGAGAATGGAAATGTCCTGTGCAGCAGAAT AAGATGTCCAAGCCTACACTGTCCTTCCCCTGTGCATGTACCACAGCTGTGCTGCCCGCGATGCCCAGAAGATTCGCTG TTCTCAGTAAGCAGCAAAATCACTGGGAAATCCTGTGAATACAATGGCACCACCTACCACCACGGCGAAATGTTTGTGG CAGAGGGGCTTTTCCAAAACAGGCAAGCAAACCAGTGTGCCCAGTGCAGCTGCTCAGAAGGAAATGTGTACTGTGGGCT GAAGACCTGTCCCAAATTAACTTGCTCTTTCCCAGTTTCTGTTCCAGAGTCCTGCTGCCCAGTTTGCAGAGGAGATGGA GAGTTATCCTGGGAACAGGCTGATGGAGATATCTTCCGGCAGCCAGCCAACAGGGAAGCCAGACACTCTTACCACCGCC CCCACTATGAGCTGTCACCCAGCTCCACCAGGCAGGTAGTCAATGTTCCACGATTTCCAAGTGCCAGGAGTAACCGCGG AGTTCTACCAGATCCCCAGCAAGCCTCAGGAACAATAGTACAAATTGTTATCAACAACAAGCACAAGCATGGACGAGTT TGTGTTTCAAATGGCAAAACATACTCCCACGGTGAATCT
Citation	Chimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301.
Copyright	Reprinted with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	The probe for Ventroptin was amplified by PCR using the following primers: 5'-GGAATTCCGATGAGAAGAAAGTGGAGATCG- 3', and 3 primer, 5'-GCTCTAGAGCAGATTCACCGTGGGAGTAT- 3'.