GEISHA - A Chicken Embryo Gene Expression Database
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SMYD1
SET and MYND domain containing 1

Gene
Official SymbolSMYD1
Official Full NameSET and MYND domain containing 1
CGNC ID11893
also known asBOP, histone-lysine N-methyltransferase SMYD1|CD8 beta opposite|SET and MYND domain-containing protein 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204155
PolypeptideNP_989486
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4220
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human150572ENSG00000115593MIM:606846
Mouse12180ENSMUSG00000055027All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:104790
Xenopus100145429, 443889978313
Zebrafish569027, 321245ENSDARG00000009280ZDB-GENE-060522-1, ZDB-GENE-030131-9825ZFIN:ZDB-GENE-060522-1, ZFIN:ZDB-GENE-030131-9825
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene373960
Ensembl GeneENSGALG00000015935
KEGGgga:373960
GEISHA IdBop.Gottlieb.2002Data SourcePublication
Complete cDNA Template Probeshow
ATGGAATCAGTTGAAGTGTTCACGACTGAAGGTAAAGGCAGGGGCTTGAAAGCACAGAAGGAATTCTTGCCTGGAGATG
TCATCTTTGCGGAGCCAGCCTATGCTGCTGTGGTTTTTGATAGCCTGACACACGTAATCTGCCACACCTGCTTCAAACG
ACAGGAGAGGCTCCATCGCTGCGGCCAGTGCAAGTTCGCCTACTACTGCGACCGGACCTGCCAGAGAGATGCCTGGCTG
AACCACAAAAATGAGTGCTCTGCCATCAAGAAGCACGGCAAGGCACCCACTGAGAACATCAGGCTGGCAGCCCGGATCC
TGTGGCGGATAGAGAGAGAAGGCGGTGGGCTGTCAGAGAACTGCCTGGTCTCTATTGATGACCTGCAAAACCACGTGGA
GAGCTTTGATGAGGAGGAGAAGAAGGACCTTCGTGTTGATGTGGAAAGCTTCCTGGAATTCTGGCCGGCCCAGAGCCAG
CAGTTTGGCATGCAGTACATCTCCCACATATTTGGAGTGATCAACTGCAATGCCTTTACCCTCAGTGACCAAAGAGGAC
TGCAAGCTGTTGGTGTGGGAATCTTCCCCAACCTCTGCCAGGCCAACCACGACTGCTGGCCCAACTGTACTGTCATCTT
CAACAACGGCAATCATGAGGCTGTAAGATCAATGTTCCACACACAGATGAGGATTGAGCTGCGGGCACTGAGCAAGATC
TCCCCAGGAGATGAGCTGACTGTGTCCTATGTGGACTTCCTCAATGTGAGTGAGGAGCGGCGGAAGCAGCTGAAGAAGC
AGTACTATTTCGACTGTACCTGTGAGCACTGCAAGAAAAAGATCAAAGATGACCTGATGCTGGCAGTGAAAGAGGGGGA
CAAGAAGCCTTCTGCAGAGACAGTGAAGGAGGTTATCCAGTTCTCCAAGGACACACTGGAGAAGATCAACAAGGCCCGC
CTGGAGGGAACTTACCATGAAGTTGTGAAGCTGTGCCGTGAGTGCCTGAAGAAACAGGAGCCTGTGCTGGGAGACACAA
ACATCTACCTCCTGAGGATCCTCAGCATTGCCTCTGAGGTGCTCTCCTACCTCCAGATGTTTGAGGAAGCAGCTGAATA
TGCCAAGAGGATGGTGGAGGGCTACATGAAAATATACCATCCCAACAATGCACAGCTGGGGATGGCTGTGATGCGAGCA
GGAGTGACCCACTGGCATGCCGGCCTCATTGAAGCTGGACACAGCATGATCTGTAAAGCCTATGCCATTCTCCTGATAA
CCCATGGACCTTCCCACCCAATTACCAAAGACCTGGAGGTCATGCGTGTCCAGACGGAGATGGAGCTGCGCATGTTCCA
GCAGAATGAGTTCATGTACTACAAGATGAGGGAAGCTGCCCTCAAAAACCAAAAGATTCAAGTCATGCCTGAACCCAGC
AATGAGGCCCCACCCAGCCTCTTCCACAAGAAGGAATAA
CitationGottlieb, P., Pierce, S., Sims, R. et al. Bop encodes a muscle-restricted protein containing MYND and SET domains and is essential for cardiac differentiation and morphogenesis. Nat Genet. 2002; 31, 25–32.
CopyrightCopyright © 2002, Springer Nature.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204155.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 10
Anterior/Second Heart Field
Heart Tube
 
19-20
stage 20
Heart
Somites
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4220

Mouse

EmageMGI:104790
EurexpressMGI:104790
MGI GXDMGI:104790

Frog

Xenbase978313

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060522-1, ZDB-GENE-030131-9825
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