GEISHA - A Chicken Embryo Gene Expression Database
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CNOT7
CCR4-NOT transcription complex subunit 7

Gene
Official SymbolCNOT7
Official Full NameCCR4-NOT transcription complex subunit 7
CGNC ID10229
also known asCCR4-NOT transcription complex subunit 7|CAF-1|CCR4-associated factor 1, CCR4-NOT transcription complex, subunit 7, CNOT7
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001006454
PolypeptideNP_001006454
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4905
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly39366FBgn0036239
Human29883ENSG00000198791MIM:604913
Mouse18983ENSMUSG00000031601All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1) MGI:1298230
Xenopus100124970, 734751969323
Zebrafish768119ENSDARG00000032116ZDB-GENE-061013-29ZFIN:ZDB-GENE-061013-29
Gene Ontology
Molecular Function3'-5'-exoribonuclease activity, exoribonuclease activity, metal ion binding, more...poly(A)-specific ribonuclease activity, RNA binding
Biological Processcytoplasmic mRNA processing body assembly, more...deadenylation-dependent decapping of nuclear-transcribed mRNA, exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay, gene silencing by RNA, negative regulation of cell proliferation, nuclear-transcribed mRNA poly(A) tail shortening, positive regulation of cell proliferation, positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay, positive regulation of nuclear-transcribed mRNA poly(A) tail shortening, positive regulation of transcription from RNA polymerase II promoter, regulation of translation, RNA phosphodiester bond hydrolysis, exonucleolytic, transcription, DNA-templated
Cellular ComponentCCR4-NOT complex, cytoplasmic mRNA processing body, nucleus
Links to other databases
Entrez Gene422733
Ensembl GeneENSGALG00000013649
KEGGgga:422733
GEISHA IdChEST852f24Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CTGACTCAATCCTCTGTTTCATTTGAAGTTTTTTTTTCTTCTGCCCTTAGCTAGGATACAATAATCTTCTAAGTTCAGC
AGCTTCACACTGTATTTTTGGCATCTTTTGGTATTTCAACCCATAGAATATGACATTTGCTGCATAACCTGCAGTCGTT
CAAGCAAAACAAACTACTGAAACCATAGTAACTGCTGTTGTTTTACTAGTGTTCTGCCATCAAACACGTCCTGCACGTG
CCAACTGCAGGTTGGCCTGCTGCTTTAGATCCGCTCTGTGAGGAGGGAAAGAAGCTTGAGAAAACAGCTTTACACCCTT
CAGGAAAAGAACAGCTATGACTTTGCCATCTTGCCATTAAGCTGAGATTTGAAGGCTATTGGAATAGTAGGAATTTTGT
AATGGCGCACTTCCCTTGATTAACTTTTATTCTAGTGACGTATGCTCCAAATATTTTTTTATGAAGTCGTATTTATTAT
GTACTTGATTTGACAATTTCTGGAAGTCAGTTTAGTTCAAGATAAAGCCCAAAGATCTGGAAAAAAAAATGCTATTTAA
CTGAATTACTGAATTAGGACAACAAAATCATGCTTTTTTGTAGTTGCTACAAAGACAGATGTTACAGATATTTGTTGTA
AAACAACAAAAATATAAATAACTTAGAACAAATAAAGTTACCTGAGGATTGTAATGCTAGTTTATTTTTGAGTATATCT
TAGCAATATATTTTAGATATATTGTTTTAAAGGACCCTAAAAATATGTTCTTATCTCTGCTTACCATTTGTACAAAGCA
GTTGTGCAAGAGAAAGTTTTGGTATTGAATAGCTAAATCCAAGCCTGAAAATGAGGAAAGTGCGAACTCGTGTGCCTGG
TTGTGTGTGCCCCCGTAAGGGTGGGCCTGTTCCCACGGAAATCAATCATAAAGAAACCTCAAAGTTCCCCAATTAATCT
GTTTACCTTGAACTGCAAAGAAAAACAAAAGCAACCAACAACCTTTTCATTGGATTACAAAAAGGAAATGGGGGGGCCC
TTTTAAAAAAAAAATAATTTGGTAAACAAAGGGTAATTTTTTTTAAACTTTTTTAAAAAAAGGGCCTAAAATGTTCCCC
Commentsno specific expression detected stages 4-7; widespread expression stages 12-21.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Head Mesenchyme
Widespread Expression
 
13-18
stage 16
Head Mesenchyme
Widespread Expression
 
19-21
stage 20
stage 21
Allantois
Head Mesenchyme
Limb Buds
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Trunk Mesenchyme
Widespread Expression
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4905

Mouse

EmageMGI:1298230
EurexpressMGI:1298230
MGI GXDMGI:1298230

Frog

Xenbase969323

Fruit Fly

BDGPFBgn0036239

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-061013-29
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