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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LUM
lumican

Gene

Official Symbol	LUM
Official Full Name	lumican
CGNC ID	50614
also known as	lumican\|KSPG lumican\|keratan sulfate proteoglycan lumican
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001276357
Polypeptide	NP_001263286

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4060			MIM:600616
Mouse	17022	ENSMUSG00000036446	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:109347
Xenopus	496415, 379493			1004933
Zebrafish	415149		ZDB-GENE-040625-24	ZFIN:ZDB-GENE-040625-24

Gene Ontology

Molecular Function	collagen binding
Biological Process	collagen fibril organization, positive regulation of transcription from RNA polymerase II promoter, more...visual perception
Cellular Component	extracellular space, fibrillar collagen

Links to other databases

Entrez Gene	417891
Ensembl Gene	ENSGALG00000011271
KEGG	gga:417891

Entry 1

GEISHA Id	LUM.Anderson.2022	Data Source	Publication
Complete cDNA Template Probe	show CCTGTCACTGTTTACAGCATATATTGGTCGATACAGTCCCTTATTGCATCTGCTCTGGGAATTAAGGAAAGCAGCTTCA AGGCAGTAAGAGACAAGACACATTGAAAAGATGACTTTAAACTCTCTACCCATCTTTCTAGTATTGATTAGTGGCATTT TTTGCCAGTATGACTATGGTCCTGCAGATGATTATGGCTATGACCCTTTTGGGCCATCCACAGCAGTCTGTGCCCCAGA ATGTAATTGTCCTTTAAGCTATCCCACTGCAATGTATTGTGACAATCTTAAACTGAAAACCATTCCAATTGTACCAAGT GGAATAAAATACCTTTATCTTCGAAACAATATGATTGAGGCCATTGAAGAGAACACATTTGATAATGTAACAGACCTGC AGTGGCTGATCCTAGATCACAATCATCTGGAAAACTCAAAAATTAAGGGAAGAGTCTTCTCTAAACTAAAGAATCTGAA GAAACTTCACATTAACTACAACAATTTGACAGAAGCTGTTGGACCGCTCCCCAAAACTCTGGATGACCTGCAATTAAGT CACAATAAGATCACAAAAGTCAACCCTGGTGCACTTGAGGGGCTGGTAAATCTGACTGTCATTCATCTCCAGAACAACC AGCTGAAAACAGATTCTATTTCTGGGGCATTTAAAGGTCTGAATTCACTTTTGTATCTAGACTTAAGCTTCAATCAACT TACAAAGCTACCAACAGGACTGCCTCACTCCTTACTCATGCTGTATTTTGACAATAACCAGATCTCCAATATTCCTGAT GAATACTTCCAAGGTTTTAAAACTCTGCAATATTTACGTTTATCGCACAATAAATTAACAGATTCTGGAATACCAGGCA ATGTCTTCAATATCACATCATTGGTCGAGTTGGATCTGTCTTTCAATCAGCTGAAGAGTATTCCAACTGTCAGTGAGAA TCTTGAAAACTTCTACCTCCAAGTGAACAAAATTAACAAGTTCCCACTGAGCAGCTTCTGTAAGGTTGTTGGACCACTG ACCTATTCCAAGATCACACATTTACGCCTGGATGGAAACAATCTCACTCGGGCTGACCTGCCAC
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Images and probe sequence provided by Claire Anderson. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

stage 12

Blood Vessels
Dermomyotome
Extraembryonic Blood Vessels
Head Mesenchyme
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Pharynx
Sclerotome
Somites
Splanchnic Mesoderm
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

Entry 2

GEISHA Id	LUM.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GGCTGTCACTGTTTACAGCATATATTGGTCGATACAGTCCCTTATTGCATCTGCTCTGGGAATTAAGGAAAGCAGCTTC AAGGCAGTAAGAGACAAGACACATTGAAAAGATGACTTTAAACTCTCTACCCATCTTTCTAGTATTGATTAGTGGCATT TTTTGCCAGTATGACTATGGTCCTGCAGATGATTATGGCTATGACCCTTTTGGGCCATCCACAGCAGTCTGTGCCCCAG AATGTAATTGTCCTTTAAGCTATCCCACTGCAATGTATTGTGACAATCTTAAACTGAAAACCATTCCAATTGTACCAAG TGGAATAAAATACCTTTATCTTCGAAACAATATGATTGAGGCCATTGAAGAGAACACATTTGATAATGTAACAGACCTG CAGTGGCTGATCCTAGATCACAATCATCTGGAAAACTCAAAAATTAAGGGAAGAGTCTTCTCTAAACTAAAGAATCTGA AGAAACTTCACATTAACTACAACAATTTGACAGAAGCTGTTGGACCGCTCCCCAAAACTCTGGATGACCTGCAATTAAG TCACAATAAGATCACAAAAGTCAACCCTGGTGCCCCTTGAGGGGCTGGTAAATCTGACTGTCATTCATCTCCAGAACAA CCAGCTGAAAACAGATTCTATTTCTGGGGCATTTAAAGGTCTGAATTCACTTTGTATCTAGACTTAAGCTTCAATCAAC TTACAAAGCTACCAACAGGACTGCCTCACTCCTTACTCATGCTGTATTTTGACAATAACCAGATCTCCCAATATTCCTG ATGAATACTTACCANGGTTTTANAACTCTGCAATATTTACGTTATCGCACAATAAATTAACCGAATCTGGAATACCAGG CAATGGCTTCCATATCC
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.