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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CNOT2
CCR4-NOT transcription complex subunit 2

Gene

Official Symbol	CNOT2
Official Full Name	CCR4-NOT transcription complex subunit 2
CGNC ID	7634
also known as	CCR4-NOT transcription complex subunit 2, Not2, CCR4-NOT transcription complex, subunit 2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001012808
Polypeptide	NP_001012826

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	40683			FBgn0017550
Human	4848	ENSG00000111596		MIM:604909
Mouse	72068	ENSMUSG00000020166	All phenotypic alleles (2):Targeted, other(2)	MGI:1919318
Xenopus	100127821, 443622			991719
Zebrafish	100037372	ENSDARG00000061802	ZDB-GENE-070410-70	ZFIN:ZDB-GENE-070410-70

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	417851
Ensembl Gene	ENSGALG00000010042
KEGG	gga:417851

Entry 1

GEISHA Id	Not2.Chapman.2008	Data Source	Direct Submission
Complete cDNA Template Probe	show GTTGCTCCCCCAGCATCCTCCGTGCTGGATACTCAGCCATCTTGGATCCGCGGGACAAGAAAATTCATGCGGTGACAAA CAGCATGTTTGGTGCTTCAAGGAAGAAGTTTGTAGAGGGGGTTGATGGTGACTACCATGATGAAAACATGTACTACAGC CAATCATCGATGTTCCCACATCGGTCAGAAAAAGATATGCTGGCATCACCGTCAACATCAGGTCAGCTGTCTCAGTTTG GGGCAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGAATGAGCAACAATACCCCTCAGTTAAATCG CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTAACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCT CCATCTCCGAGCAGGGGGATATTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAA TTCCCAGCAGGACAAACAGCATGAGCAGTTCAGGGTTAGGCAGCCCCAACAGAAGCTCTCCAAGCATAATATGTATGCC AAAGCAGCAACCCTCTCGACAACCTTTTACTGTGAACAGTATGTCTGGATTTGGGATGAACAGAAATCAGGCATTTGGA ATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGAAGTGAAAATGTGACAGGACTGGACCTCTCAGATT TTCCAGCACTAGCAGACAGAAACAGAAGGGAAGGAAGTGGCAATCCAACTCCATTAATAAACCCTTTAGCTGGAAGGGC TCCCTATGTTGGGATGGTAACAAAACCAGCAAGTGAGCAGTCCCAGGACTTTTCAATACACAATGAAGATTTTCCAGCA TTACCAGGTTCCAGCTACAAAGACCCAACATCAAGTAATGATGATAATAAATCTAATTTGAATACATCAGGCAAAACAT CATCCAGCACAGATGGGCCCAAGTTTCCTGGAGATAAAAGTTCAACTACGCAAAACAACAACCAGCAGAAAAAAGGGAT CCAGGTGTTACCTGATGGTCGGGTTACCAACATTCCTCAAGGGATGGTGACGGACCAGTTTGGAATGATTGGCTTGTTA ACATTCATCAGGGCAGCAGAGACAGATCCAGGAATGGTACATCTTGCATTAGGAAGTGATTTAACAACACTAGGTCTCA ATCTCAACTCTCCTGAAAATCTTTATCCCAAATTTGCATCACCTTGGGCATCGTCACCTTGTCGACCTCAAGACATAGA CTTCCATGTTCCATCTGAATACTTAACTAACATTCACATTAGGGATAAGCTGGCTGCAATAAAACTCGGCCGATATGGA GAAGATCTCCTGTTTTATCTCTATTACATGAATGGAGGAGATGTATTACAGCTATTAGCGGCAGTAGAGCTATTTAACC GGGATTGGAGATACCACAAAGAAGAACGAGTATGGATCACCAGGGCACCCGGAATGGAGCCAACAATGAAAACCAATAC ATACGAGAGGGGAACATATTACTTCTTTGACTGTCTTAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGAC AAATTAGAAGAAAGGCCTCATCTGCCATCAACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAAAGACTTCCCTTTT CTTGGGGTATGGCTGTCTCAGCACAATACTCAACATAACTGCAGAACTGATGTGGCTCAGGCATCCTGGTTTTAATTCC TTGAGGATCTGGCAATTGGCTCATGCGAAGGGTCACCATTTGAGGTCCTGCCTTACTAATTATGTGCTGCCCAACAACT AAATTTGTAATTGTTTTTCTTTAGTTTGAGCAGGGTCTGAATTTTTGTTTTTGTTTTATTTTTGCCAGCAGACAAGCTT GGGTCTGTAAAGACAAGCGAGTACACTGACAAAAGTTTACCACTTAGTTTTCCAAAATGTAAAAAGACAAAAAATAAGA AAAAAGACAAAAAATTAGACAACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAAATGTTTGTGCATTTT TATGTGAAGATCCTTCTCGTATTTCATTTGGAAAGATGAGCAAGGTTTGCTTCCTTCATTTTACTTCCCCTTCTGTTTT TGAAAGGCAGTTTTCGCCAAGCTTAATGCAAGAATATCTGACTGTTTAGAAGAAAGATATTGCCACAGTCTCTGGTTAG TTTCCAGAGTTGTGTATTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAA TAAATGTGTACATTTTTTTTAAATTTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTATATA TATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAAC GGGACATTCTGGAACTGCTGGTCAGGGGACTACTTTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGA CATCCATACCCAAGTGAATGTGATGGGACTTAAGTGAACTGAGACAATTCACTCTGGCTGTTTGAACAGCAGCGTTTCA TAGGAAGAAAAAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGC TCTCCTCACAAAAAAAAAAAAAAAA
Comments	Images Provided by Susan Chapman

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida
Hensen's Node

4-6

stage 4

stage 5

stage 6

Head Process
Hensen's Node
Notochord

7-12

stage 7

stage 8

stage 9

stage 10

Diencephalon
Head Process
Hensen's Node
Notochord

13-17

stage 17

Notochord
Pineal Gland
Tail

Entry 2

GEISHA Id	CNOT2.Stein.1996	Data Source	Publication
Complete cDNA Template Probe	show GTTGCTCCCCCAGCATCCTCCGTGCTGGATACTCAGCCATCTTGGATCCGCGGGACAAGAAAATTCATGCGGTGACAAA CAGCATGTTTGGTGCTTCAAGGAAGAAGTTTGTAGAGGGGGTTGATGGTGACTACCATGATGAAAACATGTACTACAGC CAATCATCGATGTTCCCACATCGGTCAGAAAAAGATATGCTGGCATCACCGTCAACATCAGGTCAGCTGTCTCAGTTTG GGGCAAGTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGAATGAGCAACAATACCCCTCAGTTAAATCG CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTAACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCT CCATCTCCGAGCAGGGGGATATTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAA TTCCCAGCAGGACAAACAGCATGAGCAGTTCAGGGTTAGGCAGCCCCAACAGAAGCTCTCCAAGCATAATATGTATGCC AAAGCAGCAACCCTCTCGACAACCTTTTACTGTGAACAGTATGTCTGGATTTGGGATGAACAGAAATCAGGCATTTGGA ATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGAAGTGAAAATGTGACAGGACTGGACCTCTCAGATT TTCCAGCACTAGCAGACAGAAACAGAAGGGAAGGAAGTGGCAATCCAACTCCATTAATAAACCCTTTAGCTGGAAGGGC TCCCTATGTTGGGATGGTAACAAAACCAGCAAGTGAGCAGTCCCAGGACTTTTCAATACACAATGAAGATTTTCCAGCA TTACCAGGTTCCAGCTACAAAGACCCAACATCAAGTAATGATGATAATAAATCTAATTTGAATACATCAGGCAAAACAT CATCCAGCACAGATGGGCCCAAGTTTCCTGGAGATAAAAGTTCAACTACGCAAAACAACAACCAGCAGAAAAAAGGGAT CCAGGTGTTACCTGATGGTCGGGTTACCAACATTCCTCAAGGGATGGTGACGGACCAGTTTGGAATGATTGGCTTGTTA ACATTCATCAGGGCAGCAGAGACAGATCCAGGAATGGTACATCTTGCATTAGGAAGTGATTTAACAACACTAGGTCTCA ATCTCAACTCTCCTGAAAATCTTTATCCCAAATTTGCATCACCTTGGGCATCGTCACCTTGTCGACCTCAAGACATAGA CTTCCATGTTCCATCTGAATACTTAACTAACATTCACATTAGGGATAAGCTGGCTGCAATAAAACTCGGCCGATATGGA GAAGATCTCCTGTTTTATCTCTATTACATGAATGGAGGAGATGTATTACAGCTATTAGCGGCAGTAGAGCTATTTAACC GGGATTGGAGATACCACAAAGAAGAACGAGTATGGATCACCAGGGCACCCGGAATGGAGCCAACAATGAAAACCAATAC ATACGAGAGGGGAACATATTACTTCTTTGACTGTCTTAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGAC AAATTAGAAGAAAGGCCTCATCTGCCATCAACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAAAGACTTCCCTTTT CTTGGGGTATGGCTGTCTCAGCACAATACTCAACATAACTGCAGAACTGATGTGGCTCAGGCATCCTGGTTTTAATTCC TTGAGGATCTGGCAATTGGCTCATGCGAAGGGTCACCATTTGAGGTCCTGCCTTACTAATTATGTGCTGCCCAACAACT AAATTTGTAATTGTTTTTCTTTAGTTTGAGCAGGGTCTGAATTTTTGTTTTTGTTTTATTTTTGCCAGCAGACAAGCTT GGGTCTGTAAAGACAAGCGAGTACACTGACAAAAGTTTACCACTTAGTTTTCCAAAATGTAAAAAGACAAAAAATAAGA AAAAAGACAAAAAATTAGACAACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAAATGTTTGTGCATTTT TATGTGAAGATCCTTCTCGTATTTCATTTGGAAAGATGAGCAAGGTTTGCTTCCTTCATTTTACTTCCCCTTCTGTTTT TGAAAGGCAGTTTTCGCCAAGCTTAATGCAAGAATATCTGACTGTTTAGAAGAAAGATATTGCCACAGTCTCTGGTTAG TTTCCAGAGTTGTGTATTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAA TAAATGTGTACATTTTTTTTAAATTTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTATATA TATGACATCTATTTTGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAAC GGGACATTCTGGAACTGCTGGTCAGGGGACTACTTTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGA CATCCATACCCAAGTGAATGTGATGGGACTTAAGTGAACTGAGACAATTCACTCTGGCTGTTTGAACAGCAGCGTTTCA TAGGAAGAAAAAAAAAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGC TCTCCTCACAAAAAAAAAAAAAAAA
Citation	S Stein, K Niss, M Kessel. Differential Activation of the Clustered Homeobox Genes CNOT2 and CNOT1 During Notogenesis in the Chick. Dev Biol. 1996 Dec 15;180(2):519-33. DOI: 10.1006/dbio.1996.0325.
Copyright	© 1996 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001012808.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

X-XIV

stage XI

stage XII

stage XIII

Area Pellucida
Hypoblast

1-3

stage 3

Primitive Streak

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Headfold
Hensen's Node

7-12

stage 7

stage 8

stage 9

stage 10

Anterior Intestinal Portal
Foregut
Hensen's Node
Neural Plate/Tube
Notochord
Unlabeled

13-18

stage 14

Notochord

ea, epiphysis anlage

19-24

stage 20

stage 24

Limb Buds
Tail

e. epiphysis

all

Entry 3

GEISHA Id	NOT2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATCCTCCGTGCTGGATACTCAGCCATCTTGGATCCGCGGGACAAGAAAATTCATGCGGTGACAAACAGCATGTTTGGTG CTTCAAGGAAGAAGTTTGTAGAGGGGGTTGATGGTGACTACCATGATGAAAACATGTACTACAGCCAATCATCGATGTT CCCACATCGGTCAGAAAAAGATATGCTGGCATCACCGTCAACATCAGGTCAGCTGTCTCAGTTTGGGGCAAGTTTATAC GGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGAATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAG GCACTCAGTTACCGAGCCACGTAACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCGAGCAG GGGGATATTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCCAGCAGGACA AACAGCATGAGCAGTTCAGGGTTAGGCAGCCCCAACAGAAGCTCTCCAAGCATAATATGTATGCCAAAGCAGCAACCCT CTCGACAACCTTTTACTGTGAACAGTATGTCTGGATTTGGGATGAACAGAAATCAGGCATTTGGAATGAATAACTCCTT ATCAAGTAACATTTTTAATGGAACAGATGGAAGTGAAAATGTGACAGGACTGGACCTCTCAGATTTTCCAGCACTAGCA GACAGAAACAGAAGGGAAGGAAGTGGCAATCCAACTCCATTAATAAACCCTTTAGCTGGAAGGGCTCCCTATGTTGGGA TGGTAACAAAACCAGCAAGTGAGCAGTCCCAGGACTTTTCAATACACAATGAAGATTTTCCAGCATTACCAGGTTCCAG CTACAAAGACCCAACATCAAGTAATGATGATAATAAATCTAATTTGAATACATCAGGCAAAACATCATCCAGCACAGAT GGGCCCAAGTTTCCTGGAGATAAAAGTTCAACTACGCAAAACAACAACCAGCAGAAAAAAGGGATCCAGGTGTTACCTG ATGGTCGGGTTACCAACATTCCTCAAGGGATGGTGACGGACCAGTTTGGAATGATTGGCTTGTTAACATTCATCAGGGC AGCAGAGACAGATCCAGGAATGGTACATCTTGCATTAGGAAGTGATTTAACAACACTAGGTCTCAATCTCAACTCTCCT GAAAATCTTTATCCCAAATTTGCATCACCTTGGGCATCGTCACCTTGTCGACCTCAAGACATAGACTTCCATGTTCCAT CTGAATACTTAACTAACATTCACATTAGGGATAAGCTGGCTGCAATAAAACTCGGCCGATATGGAGAAGATCTCCTGTT TTATCTCTATTACATGAATGGAGGAGATGTATTACAGCTATTAGCGGCAGTAGAGCTATTTAACCGGGATTGGAGATAC CACAAAGAAGAACGAGTATGGATCACCAGGGCACCCGGAATGGAGCCAACAATGAAAACCAATACATACGAGAGGGGAA CATATTACTTCTTTGACTGTCTTAACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAATTAGAAGAAAG GCCTCATCTGCCATCAACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAAAGACTTCCCTTTTCTTGGGGTATGGCT GTCTCAGCACAATACTCAACATAACTGCAGAACTGATGTGGCTCAGGCATCCTGGTTTTAATTCCTTGAGGATCTGGCA ATTGGCTCATGCGAAGGGTCACCATTTGAGGTCCTGCCTTACTAATTATGTGCTGCCCAACAACTAAATTTGTAATTGT TTTTCTTTAGTTTGAGCAGGGTCTGAATTTTTGTTTTTGTTTTATTTTTGCCAGCAGACAAGCTTGGGTCTGTAAAGAC AAGCGAGTACACTGACAAAAGTTTACCACTTAGTTTTCCAAAATGTAAAAAGACAAAAAATAAGAAAAAAGACAAAAAA TTAGACAACAAAATTTGCATTGTTCATTGTAGCACTATTGGTAATAAAAAATGTTTGTGCATTTTTATGTGAAGATCCT TCTCGTATTTCATTTGGAAAGATGAGCAAGGTTTGCTTCCTTCATTTTACTTCCCCTTCTGTTTTTGAAAGGCAGTTTT CGCCAAGCTTAATGCAAGAATATCTGACTGTTTAGAAGAAAGATATTGCCACAGTCTCTGGTTAGTTTCCAGAGTTGTG TATTACTGAGCTTCATCTTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAATGTGTACATT TTTTTTAAATTTTTGGACATCACATGAATAAAGGTATGTATGTACGAATGTGTATATATTATATATATGACATCTATTT TGGAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAACGGGACATTCTGGAA CTGCTGGTCAGGGGACTACTTTGTCGCCCTGTGCACTAAAGGGCCAGATTTTCAGCAGCCAAGGACATCCATACCCAAG TGAATGTGATGGGACTTAAGTGAACTGAGACAATTCACTCTGGCTGTTTGAACAGCAGCGTTTCATAGGAAGAGAAAAA AAAGATCAATCTTGTATTTTCTGACCACATAAAGGCTTCTTCTCTTTGTAATAAAGTAGAAAAGCTCTCCTCA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001012808 ).