Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

PDLIM5
PDZ and LIM domain 5

Gene

Official Symbol	PDLIM5
Official Full Name	PDZ and LIM domain 5
CGNC ID	51807
also known as	PDZ and LIM domain protein 5, PDLIM5
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001031149
Polypeptide	NP_001026320
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.6787

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	10611	ENSG00000163110		MIM:605904
Mouse	56376	ENSMUSG00000028273	All phenotypic alleles (2):Targeted, other(2)	MGI:1927489
Xenopus	548530, 100101292			854113
Zebrafish	393165, 436927	ENSDARG00000027600, ENSDARG00000038267	ZDB-GENE-040426-908, ZDB-GENE-040718-401	ZFIN:ZDB-GENE-040426-908, ZFIN:ZDB-GENE-040718-401

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422699
Ensembl Gene	ENSGALG00000012211
KEGG	gga:422699

Entry 1

GEISHA Id	ChEST458h21	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCTCGAGGAGGGACGGAGCTGCTGCCTGGCAGACGCGCCGCGGGTGTCTTCGTCGCTCCGCGCCCCGCAGCGCTGG GCTGGGCATCAAGTCCTTGGCTTGGATCCTTGAATACTGAACACCATGAGCAACTACAGCGTGTCTCTGGTCGGCCCGG CTCCTTGGGGTTTCAGGCTTCAAGGTGGCAAGGATTTCAACATGCCCCTGTCCATCTCTCGGCTTAACGACGGTGGAAA AGCAGCCCGAGCAAACGTGGGGATTGGTGACGTGGTTCTCACCATTGATGGGATAAGTACAGACAGGATGACTCATCTA GAAGCACAAAACAAGATCAAGGCATGTACAGGCAATCTGAACATGACTTTGCAAAGAGTGGCTTCTGCAACAAAACCTG ATATTATTCATGTACCAAAGCCTGCCACGCACAATGCCGCCCCGGGCGGCCATGTCGGCGACAGCACCCAGGAGCTAGC GGAGGGGCTGCGACGAGGATTCAGAGAGAACCAGGTGACAATAAACAGCAAAATGGGAAAATCCCACCCAAACGCCCCC CACGAAAGCACATTGTGGATACCTATACGGAGTTCTATCACACCCCTACTCACAGCGATGCCAGCAAGAAGCGGCTGAT TGAAGATACTGAAGACTGGCATCCC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Opaca
Germinal Crescent
Paraxial Mesoderm
Primitive Streak

7-12

stage 9

stage 10

stage 11

stage 12

Atria
Blood Vessels
Head Mesenchyme
Heart Tube
Oral Pharynx
Paraxial Mesoderm
Rhombomeres
Sinus Venosus
Somites
Ventricles
Yolk Sack or Stalk

13-18

stage 14

stage 17

stage 18

Ear/Otic Placcode
Head Mesenchyme
Pharyngeal Arches and Clefts
Sinus Venosus

19-20

stage 19

stage 20

Atria
Sinus Venosus
Somites
Ventricles

Entry 2

GEISHA Id	PDLIM5.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTCTGATAGGCCTGCAGGGTACAGAGGTTTTTACAAAGCAATGAAGAGTAGGTGGCTATGCTAGCAAACAGGAGTGACT TAGAAGAGGCCACTTGAAAGAAAGCGTAGATGGGATACCATTCCTGACATCATGGCGTGTACTACCAGAACACTAGCCA AAACAAAGTGCTAGTTGAGGTGCATTTGACAAGACAGAAATGTCAGATCAGATCTTCAGTATAAGGAAGTGAGAGTTAT ACTCTTCTGTTCACAGCTGAAGTTCTAGGAAGTTTTCAGTGCCTCGGAAAGGAAATCACATTGAATCTACGCATAACAG TGCTTATAACTTGAATGTGATGCTTGGTGTTTAATGAGGGAAACTTCTGAGGACAGAAGGTCCTCAGGTGCAACTGAGG ACATTACTTTTCTCTCAGTACATTCTTTATGATGTAGCTCATAAATATGTATATTGGTGGTGTGCCAGGTAGTGTACTG AAAACTGATTTTCTTGCTCAGCTGTTACGATTTTTATTCGTTTGCTTTTTTCTCTCCTTTCCAGCAGATGCAAGGAATA TATTGTTAAATAATGTAACATTGAGTTAGGCAGTCCAGTATTTCTCAGTTGTTGCAGGGGAAAGTAGACAATACTGCCA TTATGCATTTATGCAAGCCAAGAGATTTTGCCAATCCTGTGGCTTTGTATGAATTTCACTTCCACCACAGAGGGTCAGC AGGAGACCTGTGCACCAGTTAAGTCCCACTTTGTCTTCCCAATTAGGGCTCAATGGTATTGGAGTAGTACGTAAGCTTA TAGGGGGAGGGGTAATGACCCTCTGCACGAGGTGGACTTACTCCG
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.