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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXB9
homeobox B9

Gene

Official Symbol	HOXB9
Official Full Name	homeobox B9
CGNC ID	870
also known as	homeobox protein Hox-B9
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001233690
Polypeptide	XP_001233691
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3219	ENSG00000170689		MIM:142964
Mouse	15417	ENSMUSG00000020875	All phenotypic alleles (2):Targeted, knock-out(2)	MGI:96190
Xenopus	394474, 398337			963093
Zebrafish	30344	ENSDARG00000056023	ZDB-GENE-990415-109	ZFIN:ZDB-GENE-990415-109

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	771865
Ensembl Gene
KEGG	gga:771865

Entry 1

GEISHA Id	Hox-B9.Matsushita.2002	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAAAATG AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
Citation	Matsushita S, Ishii Y, Scotting PJ, Kuroiwa A, Yasugi S. Pre-gut endoderm of chick embryos is regionalized by 1.5 days of development. Dev Dyn. 2002 Jan;223(1):33-47.
Copyright	Copyright © 2002 Wiley-Liss., Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_001233690).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 11

Endoderm
Endoderm, early
Mesoderm, early
Neural Plate/Tube

posterior endoderm

Entry 2

GEISHA Id	HOXB9.Sakiyama.2000	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAAAATG AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
Citation	Sakiyama J, Yokouchi Y, Kuroiwa A. Coordinated expression of Hoxb genes and signaling molecules during development of the chick respiratory tract. Dev Biol. 2000 Nov 1;227(1):12-27.
Copyright	Reprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001233690).

Stage

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Location (click to highlight)

Comments (click to highlight)

31-34

stage 34

Lung

Abdominal Air Sac (5)
Figure 2 compares expression of the Hoxb genes in the developing chick respiratory tract at HH stages 24, 27, 29 and 34.

Entry 3

GEISHA Id	HOXB9.Huber.2012	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGNAAATG AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
Citation	Huber L, Ferdin M, Holzmann J, Stubbusch J, Rohrer H. HoxB8 in noradrenergic specification and differentiation of the autonomic nervous system. Dev Biol. 2012 Mar 1;363(1):219-33. Epub 2011 Dec 24.
Copyright	Copyright © 2011 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # XM_001233690.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Neural Plate/Tube

13-18

stage 14

stage 16

Neural Plate/Tube

19-24

stage 24

Spinal Cord
Spinal Ganglia and Nerves

25-30

stage 27

stage 29

stage 30

Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves
Unlabeled

stage 31

Spinal Cord
Spinal Ganglia and Nerves
Unlabeled

Entry 4

GEISHA Id	HOXB9.Dubrulle.2001	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTA AATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCA GCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCAT CCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGA CCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGA GTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGT GAAGGAAGCGAAGACAAAGACAGAACAGATCAAACCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAA AGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCG TAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGNAAATG AAGAAAATGAACAAGGAGCAGGGCAAGGAGTGA
Citation	Dubrulle J, McGrew MJ, Pourquié O. FGF signaling controls somite boundary position and regulates segmentation clock control of spatiotemporal Hox gene activation. Cell. 2001 Jul 27;106(2):219-32.
Copyright	Copyright © 2001 Cell Press. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_001233690.2).

Stage

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Location (click to highlight)

Comments (click to highlight)

13-17

stage 17

Neural Plate/Tube
Paraxial Mesoderm

Entry 5

GEISHA Id	Hoxb-9.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( XM_015299445).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

stage 23

Leg

25-30

stage 27

Leg

31-44

stage 44

Entry 6

GEISHA Id	Hoxb9.Moreau.2019	Data Source	Publication
Complete cDNA Template Probe	show TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
Citation	Chloe Moreau, Paolo Caldarelli, Didier Rocancourt, Julian Roussel, Nicolas Denans, Olivier Pourquie, Jerome Gros. Timed Collinear Activation of Hox Genes during Gastrulation Controls the Avian Forelimb Position. Curr Biol. 2019 Jan 7; 29(1):35-50.e4. Epub 2018 Dec 13. DOI: 10.1016/j.cub.2018.11.009.
Copyright	Copyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).

no images

Entry 7

GEISHA Id	Hoxb9.Iimura.2006	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
Citation	Tadahiro Iimura, Olivier Pourquié. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature. 2006 Aug 3;442(7102):568-71. Epub 2006 Jun 7. DOI: 10.1038/nature04838.
Copyright	Copyright © 2006 Nature Publishing Group.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-8

stage 7

stage 8

Early Endoderm
Early Mesoderm
Primitive Streak

5 somites stage
6 somites stage

Entry 8

GEISHA Id	Hoxb9.Bel-Vialar.2002	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TTCTCCCTTATTTTTTCTTATTTTTGCTATCGTACTCTGGAGCCCGAGTGGCAAAGAATGGCTTTTATCTCCATTCCCC CATGGTGGTTATTAAAGGCGAAGTGAATACATCAGCATCTTTCATTAAAAAAAAAAAAAGGGGGGGGAAAGAAAAGAAA AGAAACCCGGACCCCCTCCCGGACCCCCCCACAACATTTCGGCAGCAAAATCTACGTAGGGAGATATCAGCTCCAGCTC TGCCCCTTTCGTGGCTTTTCTAAACTCCTGACGTTTTGCAACATTGCATAAACATAAAACAATCCATCCTTGATATGGA ATGCAAGGGCGGATGACAGCGCAGCGCAGCCCCCTCGGCTTCGATTGATTTACGCCGAGACTGACGCTTTATCAGGCAC ACGAAAAAAGTTTGACCAATCATTTTGCTGGGAGCTCACAACACAGCAGCCCAACTGTACTTTGTTGGCTAGGAAGTTC GAGAAGGGGGTAGAGTACAAATCTAGATCTGTCCTATATATTTTTTTTCCCTTCATTGAACCGTGCTTTGTATGATGTC TGAGAATGTCCATTTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTC AGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGT TTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCT ACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGC AGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACA CAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAG TTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAAAGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTT CCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCTCCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGG AAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGG ACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAA AATGAAGAAAATGAACAAGGAGCAGGGCAAGGAGTGAGAAGAGCAGCAGAGCAGCACCCTCCCCTTCCTCCCCTCTCTT CCCCCCCCGCCCCCCCCCAACCCCCAGCTCCGAGCACCCGAGCTGTAGTGCTTACACACAACCCGAACCACGGGGAAAA CCTTCCCAATTTCCCATCTCCACCTTTGCATGCGAGATGTTGCTTAATATCCTTTTTACCCTCTTAGCGTTGCCACGTA GGAGGCAACTTAGCAAAAAATAGCGCAGCTCCTCTTTGGGGGGCAACATGCTGGGTTTTGTTTCTGTTCTCTTGTTGTC TTTCTCTATTTCCTTTTTTTTTTCTTCTCCCCACAGTGTAACACAGACACAGGCTCCTGTCGGAGCAGCAGCTTTCCCT GCTTGCATTCTCTCCATGGAAAGCAAGACGGCAAACACAACCGGCCACAAACAGCCCCGCTCCAAACCCCCACCAAAGC ACGCTGCCTTTCTTTCTCCACGTAAGGACAATGCTTCACACTCACAGCACCCGGCGCACGCACACACACACACACACAC ACACACACACGTTGAGGTGGCCGAGGAACCGAAGGATTTAATTAAACTGCTGCAAGACAGACACATTCGTAAGGCTTGC GTTTAATTGCACCCAACAAATCATTTTCAATTCGTCAACTTTACAGTGGGCAAATCGCTCAGTGACAGCCCCACTCCCG ACTGCGCTGGGATTCTGTTTCCTTCTTCCTTTCTTTTTTTTTCCCTCCTTCTTTTATTGTTTTTTCGCTTTGTTTTATG ATGCGGGATTTTATTTCCATCTTACCATGGTAGATATGTGACTTTGACCTGAAAGTTTAGTAGGACCCTTCCACAGGCA AACCACCCCTCCGACCCCCTCATCTGGTAGTTTTATACTGGGTCACTTGGAAGAGGAGAGCAGACGGGGGGGGGGGGAG GAGGAGAGGCTGTGTGGGGGGCACACTCAGAGCCGCATTGTAAATTATTTAGGAGAAAAAGGGGCGGAAGAACCCCTGC CAACTTATTCCTAACTTTTAGAGGGGAGGAAGAATGGGATTTTCTAGTTAAAAAACTACCTTCGTAGTGCTATTAGGGG AGGGGAAGGTTGTGTTCTTAGTGCTAGCATATTTATAATTTATTGTGAATTGACTTTTCCTAAAGCAGTAGGCTGTTGC AGAGATAAAGTGCCAACCCTGGCGTGTGTGTATTTCTTCCCCTCCTGTTTGCTGAGACGCTGTTAATGCTCGTGGTGCT GTGGAGTTTGGGCTGCAGCGGTTCCTGGCTCCATTCACCCTCCGTTCCGGGGCCGCCCCAACCGTCTCCATCCCCGTCC CCATCTCCATCTCCATCCCCATTCCCGCTCCCATCCGCGTTCCCATCTCCATCCTTATCCCCGTCCCTATCTCCATCCC CGTCCCCTCTCCTATCCCCATCCCGGCTCAAAGAGCGGCACCGGGAGCTGCAGCGGCTCCGCTCTCCCCCCCTTCTCCC TCAAAGCACTCTCTATAGCCCACCCAGCCCCGATGGTTTACGGCGAGGGCTCCCGGCATTCCGGACGGATGCTTTCTGC TCTGACAGATCCGCTGCAGGTTTCTCCCCAACCATGCAGGACTGAGTTTCCTTTATCTCTGTAAGACTTCACTTTGTTT TGGGAAGGGGGGGGAGGGAGGGAGCGGGAAGGGGGGTGGTGGTGGGGGGGTTGGATTAGTATCAGTTGATGATATGGTG GCTATTGTAAAATGTGGTTGTGGTTGTGCTTCTGTGAATGTCGAAGCTCGTTTTCTGTTTCTATTGTGGCTTTTAAGTA TACAAAGAGTTCCTCAGTTGTTAGTTGGTGGAAAAAAAAATATGGAAATAAACCTCTCTCTTTTTCTTCGTG
Citation	Sophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
Copyright	Copyright © The Company of Biologists Limited 2002.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299445.2).