GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

FOXE1
forkhead box E1

Gene
Official SymbolFOXE1
Official Full Nameforkhead box E1
CGNC ID54753
also known asforkhead box protein E1|forkhead box E1 (thyroid transcription factor 2)|forkhead-related transciptional factor 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_003643088
PolypeptideXP_003643136
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene768789
Ensembl Gene
KEGGgga:768789

Entry 1

GEISHA IdFOXE1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATCGGCAAGGGCAACTACTGGAC
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGGCGGGGACGAACCTGTCGcDNA Template Length873
Complete cDNA Template Probeshow
ATGACCGCCGAAAGCCGGCTGCCACCGGGCCCCCCGCCGCCACCGCTGCTGAAGGCGGACCCGGCGCCGTCCGGGGAGG
AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGCGGGGCGGGCGGCGGCGGCGCAAGCGTCCGGCGGAGCGGGGCAA
GCCGCCCTACAGCTACATCGCGCTCATCGCCATGGCCATCGGGCAGGCGCCCGAGCGGCGGCTCACGCTGGGCGGCATC
TACCGCTTCATCACCGAGCGCTTCCCCTTCTACCGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCA
CCCTCAACGACTGCTTCGTCAAGGTGCCGCGGGAACCCGGCCGCCCCGGCAAGGGCAACTACTGGACGCTCGACCCGCA
CGCCCGAGACATGTTCGAGAGCGGCAGCTTCCTTCGCCGCAGGAAGCGCTTCAAACGCAGCGACCTCTCCACCTACCCG
GCCTTCCTCGCCGAGCGCCCCGCCGCGCCCTGCCGCCTGTTCCCGCCGCCCGCCGAGCTGGCCCCGGCCCCCGCCGCCC
CGTCCTGCGCCTTCGCCGCCGCCTGCCCCGCGCAGGGCTGCTCCGGCGCCGCGCTGCCCCACGGCTACGGCCCGCTGCC
CGCCGCCCCCGGGCCCTACGCGCCGCCGCCCGGCGCGGGGCCTCTGTACGCGCCCCCGGGGCGCTTCGTGCTGCCCGCC
TCGCCGCCCGCCCCCGCCGGGCTGTACGGCCGCCGCTCGCCCGCGCCCTACGCGCCGCTGCCCCACGCCTACGGTGCCG
GCGGGCAGGTGGGCGCAGCCGACCCCGGGCTGCGGCAGAGCGCCTTCCCCGGCGGCCCCGACAGGTTCGTCCCCGCGCT
CTGA
CommentsNo specific expression detected between stages 10-13. FOXE1 sequence provided by Sergey Yaklichkin from the University of Pennsylvania. Probe was generated by PCR using the following primers: F, 5'-TTATAAAAGCTTGCGGCCGCAGAATATCGGCAAGGGCAACTACTGGAC-3'; R,5'-GCTCTAGAAATTAACCCTCACTAAAGGGCGGGGACGAACCTGTCG-3'.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Area Pellucida
 
13-18
stage 14
stage 15
stage 16
stage 17
stage 17
Thyroid
 
25-30
stage 25
stage 25
stage 29
stage 29
stage 30
stage 30
Foregut
Gut
Head Mesenchyme
Leg Mesenchyme
Myotome
Spinal Cord
Thyroid
Wing Mesenchyme
 
31-42
stage 35
stage 35
stage 35
stage 35
stage 35
stage 35
stage 36
stage 36
stage 36
stage 39
stage 39
stage 39
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 40
stage 42
Feathers/Scutae
Foregut
Heart
Leg Mesenchyme
Lung
Stomach
Surface Ectoderm
Thyroid
Trunk Mesenchyme
Unlabeled
Wing Mesenchyme
 

Entry 2

GEISHA IdFOXE1.Yaklichkin.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGACCGCCGAAAGCCGGCTGCCACCGGGCCCCCCGCCGCCACCGCTGCTGAAGGCGGACCCGGCGCCGTCCGGGGAGG
AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGCGGGGCGGGCGGCGGCGGCGCAAGCGTCCGGCGGAGCGGGGCAA
GCCGCCCTACAGCTACATCGCGCTCATCGCCATGGCCATCGGGCAGGCGCCCGAGCGGCGGCTCACGCTGGGCGGCATC
TACCGCTTCATCACCGAGCGCTTCCCCTTCTACCGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCA
CCCTCAACGACTGCTTCGTCAAGGTGCCGCGGGAACCCGGCCGCCCCGGCAAGGGCAACTACTGGACGCTCGACCCGCA
CGCCCGAGACATGTTCGAGAGCGGCAGCTTCCTTCGCCGCAGGAAGCGCTTCAAACGCAGCGACCTCTCCACCTACCCG
GCCTTCCTCGCCGAGCGCCCCGCCGCGCCCTGCCGCCTGTTCCCGCCGCCCGCCGAGCTGGCCCCGGCCCCCGCCGCCC
CGTCCTGCGCCTTCGCCGCCGCCTGCCCCGCGCAGGGCTGCTCCGGCGCCGCGCTGCCCCACGGCTACGGCCCGCTGCC
CGCCGCCCCCGGGCCCTACGCGCCGCCGCCCGGCGCGGGGCCTCTGTACGCGCCCCCGGGGCGCTTCGTGCTGCCCGCC
TCGCCGCCCGCCCCCGCCGGGCTGTACGGCCGCCGCTCGCCCGCGCCCTACGCGCCGCTGCCCCACGCCTACGGTGCCG
GCGGGCAGGTGGGCGCAGCCGACCCCGGGCTGCGGCAGAGCGCCTTCCCCGGCGGCCCCGACAGGTTCGTCCCCGCGCT
CTGA
CitationYaklichkin SY, Darnell DK, Pier MV, Antin PB, Hannenhalli S. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evol Biol. 2011 Oct 15;11:302.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in Yaklichkin et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
stage 14
stage 17
stage 17
stage 18
Pharyngeal Arches and Clefts
Pharynx
Thyroid
 
25-30
stage 25
Pharynx
Thyroid
 
31-42
stage 35
stage 42
Feathers/Scutae
Thyroid
 

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona