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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXE1
forkhead box E1

Gene

Official Symbol	FOXE1
Official Full Name	forkhead box E1
CGNC ID	54753
also known as	forkhead box protein E1\|forkhead box E1 (thyroid transcription factor 2)\|forkhead-related transciptional factor 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003643088
Polypeptide	XP_003643136
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	768789
Ensembl Gene
KEGG	gga:768789

Entry 1

GEISHA Id	FOXE1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATCGGCAAGGGCAACTACTGGAC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGGCGGGGACGAACCTGTCG	cDNA Template Length	873
Complete cDNA Template Probe	show ATGACCGCCGAAAGCCGGCTGCCACCGGGCCCCCCGCCGCCACCGCTGCTGAAGGCGGACCCGGCGCCGTCCGGGGAGG AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGCGGGGCGGGCGGCGGCGGCGCAAGCGTCCGGCGGAGCGGGGCAA GCCGCCCTACAGCTACATCGCGCTCATCGCCATGGCCATCGGGCAGGCGCCCGAGCGGCGGCTCACGCTGGGCGGCATC TACCGCTTCATCACCGAGCGCTTCCCCTTCTACCGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCA CCCTCAACGACTGCTTCGTCAAGGTGCCGCGGGAACCCGGCCGCCCCGGCAAGGGCAACTACTGGACGCTCGACCCGCA CGCCCGAGACATGTTCGAGAGCGGCAGCTTCCTTCGCCGCAGGAAGCGCTTCAAACGCAGCGACCTCTCCACCTACCCG GCCTTCCTCGCCGAGCGCCCCGCCGCGCCCTGCCGCCTGTTCCCGCCGCCCGCCGAGCTGGCCCCGGCCCCCGCCGCCC CGTCCTGCGCCTTCGCCGCCGCCTGCCCCGCGCAGGGCTGCTCCGGCGCCGCGCTGCCCCACGGCTACGGCCCGCTGCC CGCCGCCCCCGGGCCCTACGCGCCGCCGCCCGGCGCGGGGCCTCTGTACGCGCCCCCGGGGCGCTTCGTGCTGCCCGCC TCGCCGCCCGCCCCCGCCGGGCTGTACGGCCGCCGCTCGCCCGCGCCCTACGCGCCGCTGCCCCACGCCTACGGTGCCG GCGGGCAGGTGGGCGCAGCCGACCCCGGGCTGCGGCAGAGCGCCTTCCCCGGCGGCCCCGACAGGTTCGTCCCCGCGCT CTGA
Comments	No specific expression detected between stages 10-13. FOXE1 sequence provided by Sergey Yaklichkin from the University of Pennsylvania. Probe was generated by PCR using the following primers: F, 5'-TTATAAAAGCTTGCGGCCGCAGAATATCGGCAAGGGCAACTACTGGAC-3'; R,5'-GCTCTAGAAATTAACCCTCACTAAAGGGCGGGGACGAACCTGTCG-3'.

Stage

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Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Pellucida

13-18

stage 14

stage 15

stage 16

stage 17

Thyroid

25-30

stage 25

stage 29

stage 30

Foregut
Gut
Head Mesenchyme
Leg Mesenchyme
Myotome
Spinal Cord
Thyroid
Wing Mesenchyme

31-42

stage 35

stage 36

stage 39

stage 40

stage 42

Feathers/Scutae
Foregut
Heart
Leg Mesenchyme
Lung
Stomach
Surface Ectoderm
Thyroid
Trunk Mesenchyme
Unlabeled
Wing Mesenchyme

Entry 2

GEISHA Id	FOXE1.Yaklichkin.2011	Data Source	Publication
Complete cDNA Template Probe	show ATGACCGCCGAAAGCCGGCTGCCACCGGGCCCCCCGCCGCCACCGCTGCTGAAGGCGGACCCGGCGCCGTCCGGGGAGG AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGCGGGGCGGGCGGCGGCGGCGCAAGCGTCCGGCGGAGCGGGGCAA GCCGCCCTACAGCTACATCGCGCTCATCGCCATGGCCATCGGGCAGGCGCCCGAGCGGCGGCTCACGCTGGGCGGCATC TACCGCTTCATCACCGAGCGCTTCCCCTTCTACCGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCA CCCTCAACGACTGCTTCGTCAAGGTGCCGCGGGAACCCGGCCGCCCCGGCAAGGGCAACTACTGGACGCTCGACCCGCA CGCCCGAGACATGTTCGAGAGCGGCAGCTTCCTTCGCCGCAGGAAGCGCTTCAAACGCAGCGACCTCTCCACCTACCCG GCCTTCCTCGCCGAGCGCCCCGCCGCGCCCTGCCGCCTGTTCCCGCCGCCCGCCGAGCTGGCCCCGGCCCCCGCCGCCC CGTCCTGCGCCTTCGCCGCCGCCTGCCCCGCGCAGGGCTGCTCCGGCGCCGCGCTGCCCCACGGCTACGGCCCGCTGCC CGCCGCCCCCGGGCCCTACGCGCCGCCGCCCGGCGCGGGGCCTCTGTACGCGCCCCCGGGGCGCTTCGTGCTGCCCGCC TCGCCGCCCGCCCCCGCCGGGCTGTACGGCCGCCGCTCGCCCGCGCCCTACGCGCCGCTGCCCCACGCCTACGGTGCCG GCGGGCAGGTGGGCGCAGCCGACCCCGGGCTGCGGCAGAGCGCCTTCCCCGGCGGCCCCGACAGGTTCGTCCCCGCGCT CTGA
Citation	Yaklichkin SY, Darnell DK, Pier MV, Antin PB, Hannenhalli S. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evol Biol. 2011 Oct 15;11:302.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Yaklichkin et al.