GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

CHST15
carbohydrate sulfotransferase 15

Gene
Official SymbolCHST15
Official Full Namecarbohydrate sulfotransferase 15
CGNC ID52093
also known asGALNAC4S-6ST, carbohydrate sulfotransferase 15|B cell RAG associated protein|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_421811
PolypeptideXP_421811
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3676
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human51363ENSG00000182022MIM:608277
Mouse77590ENSMUSG00000030930All phenotypic alleles (1):Targeted, knock-out(1) MGI:1924840
Xenopus100487411990673
Zebrafish565523ENSDARG00000074527
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene423952
Ensembl GeneENSGALG00000009704
KEGGgga:423952

Entry 1

GEISHA IdRAG-1.Kimura.2011Data SourcePublication
Complete cDNA Template Probeshow
CTTTTGGAGTGCTTCTAACTATTCTGGGTTGAACCTGCCCTTCTATATTGAAGAGAATTCATAGAATCACTCAAGGAAT
TAAATAATTTCAGTCTTGCAGAAGATGACTCATGCTTCAGAAACGTTTTTGTGGCTGTCCTTGGCTTGTTAATACAGGA
GTTTAACAGTATTAATATGAGGCATTGCATTAATTGTTGCATACACTTATTACCAAATGACTTGCACAGGCAGTGTTTC
AGATGCCGCGGCCATAGCCACAATAACCAGAAGTGTCCTGTTTGCAAAGGAGAAAATAGAATCCCTTTGTACGCTGATA
GCAAGCAGATGAAGTTGCTTGCAGTTTTGGAAGTAAGGACTGATCACAGTGAAAGCTGGAATGGATTTTTCTGCTTGAA
GAAGGGGAAGCTATGCAGCTTAATATTTGGGTTGATTATAATGACTCTAGTGATGGCATCCTATGTACTGACTGGAGCC
AAGCACGGCCTGTTGTTAATACCATCTCCCTTCCATTACGGAGCTTTTACTAGCAATCCAAGCTTAATGGACAATGAAA
GCCTTAGTGACATGAAAGACCATTACCAGCCTTCTAAAATTAATATTTCATACATAAAGGATTATCCAAGCATTAAATT
AATTATTGACACTATTACTTCAAAGATAGAGTTTATAACGAGACAGCGCCCTGGTTTAGAATTGCTGAGGAAACAAGAG
CCACATATGTTTTCAGTAATTCCTAATAAATTCCTTCCAAATAGCAAGAATCCTTGTTGGTATGAAGAGTACAGAGGAA
ACACAACCACAGACCCTTACACAACAAACTCCTATGCACTCTATTCAAAGCGTTTTCGAACCATATTCGATTACCTCAG
GAAGGTGTTTTGGAACCACTTGTACCATTACAAGGACAAACATTACCGGCTGCGCTGCCTCCCCCATTTCTACATCATT
GGGCAGCCCAAGTGTGGGACGACAGATCTGTATGACAGGCTTCGGCTGCACCCCGATGTTCGGTTCTCTGCCATCAAGG
AGCCTCACTGGTGGACAAGGAAGCGCTTTGGAATCATTCGTCTGAGGGATGGATTTCACGATCGCTACCCAGTGGAAGA
TTACCTTGATCTGTTTGACTTAGCAGCTCATCAAATTCAGGGTGTGCTGCAGAGCGAGGCAGCAAAAGAGCGCAGCGAG
ATGAATAACATCATAATTGGGGAAGCCAGTGCCTCCACCATGTGGGACAACAACGCCTGGATTTTCTTTTACGACAACA
GTAGCGAAGGAGAACCTCCCTTCTTAATCCAGGATTTTATCCATGCCTTCCAGCCAAATGCCAAACTTATTATCATGCT
GAGAGATCCTGTTGAAAGATTGTACTCCGATTATCTGTACTTTGCAAGTGCTAATAAATCTGCAGAAGATTTTCATGAA
AAAGTGGCGGAATCGCTGCAGCTGTTTGAGAATTGCATGCTGGATTACTCCCTGAGAGCCTGTGTCTACAACAACACCC
TTAACAATGCCATGCCTGTAAGGTTGCAGGTTGGGCTTTATGTTGTGTATCTTTTGGACTGGCTGACTGTTTTTGACAA
AGATCAGATACTCGTTCTTCGCTTAGAGGACCACGCATCAAATGTGAAGTACACCATGCACATGGTGTTTCAGTTTCTG
GATCTGGGACCTCTAAGTGAGAAACAAGAAGCTCTGATTACAAAAAGTCCTGCGTCAAACACCAGACGACCTGAAGACA
GAAGCCTGGGACCTATGCTACCAACAACAAAGGCAATTTTAAGAGATTTCTACAGGCCTTTTAATACAAAACTGGCACA
AGTTCTTTTTGATGACGCTTTTTTATGGAAGAGGACATAACGTGTAAATTTAGTGCCACAAATACAGTGCTTAAAGGAG
TTTTTATTTTTTTAAATTCTATTTTTGTGCGTGGATATTTACATT
CitationKimura W, Alev C, Sheng G, Jakt M, Yasugi S, Fukuda K. Identification of region-specific genes in the early chicken endoderm. Gene Expr Patterns. 2011 Mar-Apr;11(3-4):171-80. Epub 2010 Nov 23.
CopyrightCopyright © 2010 Elsevier B.V. All rights reserved.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described F, 5′-ACTTTTGGAGTGCTTCTAAC-3′, R, 5′-AATGTAAATATCCACGCACA-3′.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 8
stage 8
stage 11
stage 11
Blood Islands
Ectoderm
Extraembryonic
Hensen's Node
Neural Plate/Tube
Primitive Streak
Somites
Surface Ectoderm
 
13-14
stage 14
stage 14
Hensen's Node
 

Entry 2

GEISHA IdCHST15.Roy.2013Data SourcePublication
Complete cDNA Template Probeshow
TTCCTCCCTCCTCCCCCTCCCGCAGGGCAGAGACGGCGGGCGCAGCGCGGATGGGCGGACGGAGCGAGCTGCGGGCGCG
CCTCCCGGCTGCGGGCAGGCGGAGCGGGAGGAGCAGGAGGTTGCACAGCGCGGATCCTTGAGAACATCTCTGGGACGAT
GAAGTTTCCAGGAGCAGCAGCCTGGTTTGGAATCTGAGTGCTTTAAGAATATCTGGGAATTTCTACCCACATTTGCCTA
TTCCAATATAAATCAGAGGACAATGAATTCATTTTGCTTTTTGCATATTTTCACACTGTGTAACAATTTTTCTTCTTTC
CCATTTTGTTCAATGGGAAAAACTTGAGCCAACGGTGCAGCTGATTCTCGCTTTGCCACGTTCCTCCTCCTGAGCCAAA
TTCTTGGAAACCATGTCCACAAAACGTCTATTTTTGTAGCTGGTGTTCTTTTTTTTCTGCGTATGCCACATGTCGCTTT
TGGAGTGCTTCTAACTATTCTGGGTTGAACCTGCCCTTCTATATTGAAGAGAATTCATAGAATCACTCAAGGAATTAAA
TAATTTCAGTCTTGCAGAAGATGACTCATGCTTCAGAAACGTTTTTGTGGCTGTCCTTGGCTTGTTAATACAGGAGTTT
AACAGTATTAATATGAGGCATTGCATTAATTGTTGCATACACTTATTACCAAATGACTTGCACAGGCAGTGTTTCAGAT
GCCGCGGCCATAGCCACAATAACCAGAAGTGTCCTGTTTGCAAAGGAGAAAATAGAATCCCTTTGTACGCTGATAGCAA
GCAGATGAAGTTGCTTGCAGTTTTGGAAGTAAGGACTGATCACAGTGAAAGCTGGAATGGATTTTTCTGCTTGAAGAAG
GGGAAGCTATGCAGCTTAATATTTGGGTTGATTATAATGACTCTAGTGATGGCATCCTATGTACTGACTGGAGCCAAGC
ACGGCCTGTTGTTAATACCATCTCCCTTCCATTACGGAGCTTTTACTAGCAATCCAAGCTTAATGGACAATGAAAGCCT
TAGTGACATGAAAGACCATTACCAGCCTTCTAAAATTAATATTTCATACATAAAGGATTATCCAAGCATTAAATTAATT
ATTGACACTATTACTTCAAAGATAGAGTTTATAACGAGACAGCGCCCTGGTTTAGAATTGCTGAGGAAACAAGAGCCAC
ATATGTTTTCAGTAATTCCTAATAAATTCCTTCCAAATAGCAAGAATCCTTGTTGGTATGAAGAGTACAGAGGAAACAC
AACCACAGACCCTTACACAACAAACTCCTATGCACTCTATTCAAAGCGTTTTCGAACCATATTCGATTACCTCAGGAAG
GTGTTTTGGAACCACTTGTACCATTACAAGGACAAACATTACCGGCTGCGCTGCCTCCCCCATTTCTACATCATTGGGC
AGCCCAAGTGTGGGACGACAGATCTGTATGACAGGCTTCGGCTGCACCCCGATGTTCGGTTCTCTGCCATCAAGGAGCC
TCACTGGTGGACAAGGAAGCGCTTTGGAATCATTCGTCTGAGGGATGGATTTCACGATCGCTACCCAGTGGAAGATTAC
CTTGATCTGTTTGACTTAGCAGCTCATCAAATTCAGGGTGTGCTGCAGAGCGAGGCAGCAAAAGAGCGCAGCGAGATGA
ATAACATCATAATTGGGGAAGCCAGTGCCTCCACCATGTGGGACAACAACGCCTGGATTTTCTTTTACGACAACAGTAG
CGAAGGAGAACCTCCCTTCTTAATCCAGGATTTTATCCATGCCTTCCAGCCAAATGCCAAACTTATTATCATGCTGAGA
GATCCTGTTGAAAGATTGTACTCCGATTATCTGTACTTTGCAAGTGCTAATAAATCTGCAGAAGATTTTCATGAAAAAG
TGGCGGAATCGCTGCAGCTGTTTGAGAATTGCATGCTGGATTACTCCCTGAGAGCCTGTGTCTACAACAACACCCTTAA
CAATGCCATGCCTGTAAGGTTGCAGGTTGGGCTTTATGTTGTGTATCTTTTGGACTGGCTGACTGTTTTTGACAAAGAT
CAGATACTCGTTCTTCGCTTAGAGGACCACGCATCAAATGTGAAGTACACCATGCACATGGTGTTTCAGTTTCTGGATC
TGGGACCTCTAAGTGAGAAACAAGAAGCTCTGATTACAAAAAGTCCTGCGTCAAACACCAGACGACCTGAAGACAGAAG
CCTGGGACCTATGCTACCAACAACAAAGGCAATTTTAAGAGATTTCTACAGGCCTTTTAATACAAAACTGGCACAAGTT
CTTTTTGATGACGCTTTTTTATGGAAGAGGACATAACGTGTAAATTTAGTGCCACAAATACAGTGCTTAAAGGAGTTTT
TATTTTTTTAAATTCTATTTTTGTGCGTGGATATTTACATTTTTTTCCCATTCCAAAGAGATGCTGATTGAAGAGATGA
GACTCATCTTCAGTCAGCACACTTCACGACAGCTATATCACATTCTCCTTGTGAGAATGTAAAGCATCTTGCTTCTCAG
TTTCTTGCAACTTCTTTTACCCCAGTGGGAGTATGGAGTGGAAATGCATTCATACAAAGGTGATGTCTTACACTCTTGG
CTGGGATGGTGAAGTGTTAACCCTAAGATGCTGCAACAAGGAGTTAGCGTCATTTTTTTTCCAGTTACACTTATAATCT
CATTTTCAGTATATGTAATTCATTCATTTTTTCAAACTATCAATGTCATGTAGTCATTAAATTTTTTAATTGAACTCA
CitationRoy P, Kumar B, Shende A, Singh A, Meena A, Ghosal R, Ranganathan M, Bandyopadhyay A. A Genome-Wide Screen Indicates Correlation between Differentiation and Expression of Metabolism Related Genes. PLoS One. 2013 May 22;8(5):e63670
CopyrightThis is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_421811.4
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Somites
 
25-28
stage 28
stage 28
Wing
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3676

Mouse

EmageMGI:1924840
EurexpressMGI:1924840
MGI GXDMGI:1924840

Frog

Xenbase990673

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona