GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

OPNVA
vertebrate ancient opsin

Gene
Official SymbolOPNVA
Official Full Namevertebrate ancient opsin
CGNC ID52098
also known asCVAL, VA, VAL, VALOP, vertebrate ancient opsin|vertebrate ancient long opsin
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001105318
PolypeptideNP_001098788
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.47074
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human26123ENSG00000119977MIM:613847
Mouse67590ENSMUSG00000025008MGI:1914840
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene423974
Ensembl GeneENSGALG00000010513
KEGGgga:423974
GEISHA IdcVal.Tomonari.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGGATGTATTCAGAGCACTTGGAAATGAGTCGCTGTTGTCGAACTCCTCTGGTCCTGCTCGATGGGATCCCTTCCACC
ATCCCTTGGACTCCATCCAGCCCTGGCACTTCAGGCTTGTGGCAGCAGTAATGTTCGTGGTGACCTCCCTGTCTCTTGC
GGAGAACCTGGCTGTGATCCTGCTGTCCTGCAACTGTTCTGAGGAGCCATGCCATGCCTGTGGTTGCCACCCCTCTCAT
TTGCTTCTTCCTGTGATTCTTTCTCTTGGCTTTGTTTTGCAAGTATGCAAAACATATTGAAGTACTCTAAAAGGGAAAA
TCAATCATCACCAGGCATTGTGGCTCTCTGGTCTCTTGCTCTTTTGGCTTTTGAGCGGTACATTGTGATCTGCCGCCCA
GTGGGAAATATGCGCTTGAGAGGGAAGCATGCTGCCCAAGGTATTGCTTTTGTGTGGACCTTTTCCTTCATTTGGACCA
TTCCACCAACCATGGGTTGGAGCAGCTACACCACCAGTAAGATTGGAACTACTTGTGAGCCTAATTGGTATTCAGGAGC
TTATAATGATCGTTCCTACATTATTGCATTCTTCACCACCTGTTTTATAGTGCCTTTATTGGTAATTCTGGTGTCGTAT
GGGAAACTGCTGCAGAAGCTAAGAAAGGTGTCAAATACACAAGGCAGGTTGAGAACTGCCAGGAAACCTGAAAGACAAG
TGACTAGAATGGTGGTTGTTATGATCATTGCTTTTCTAATCTGCTGGATGCCATATGCCGTCTTTTCTATCCTAGCCAC
TGCATACCCTTCCATTGAACTGGATCCTCACCTGGCAGCAATTCCAGCTTTCTTTTCCAAAACAGCTACTGTTTATAAT
CCAATTATTTATGTTTTTATGAACAAACAGTTCAGGATGTGTCTGATTCAGATGTTCAAGTGTAGTGCCATAGAGACTG
CGGAGTCCAACATGAACCCAACTTCAGAGAGAGCAACACTCACCCAAGACAAAAGAGACAGTCAGTTGTCTGTCATGGC
AGTACGAAGCACCATTTCTTAGAGGAAAAATGGAGATGAACACAAGAATTGCAATTCTTTTGCTCAGTTAACAGCTTCA
GGAAACAAAATCTGTCTCTTGTAG
CitationTomonari S, Takagi A, Noji S, Ohuchi H. Expression pattern of the melanopsin-like (cOpn4m) and VA opsin-like genes in the developing chicken retina and neural tissues. Gene Expr Patterns. 2007 Aug;7(7):746-53. Epub 2007 Jun 13.
Copyright"Reprinted from Gene Expression Patterns, Volume number 7, Tomonari S, Takagi A, Noji S, Ohuchi H, Expression pattern of the melanopsin-like (cOpn4m) and VA opsin-like genes in the developing chicken retina and neural tissues.,746-53, Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
CommentsThe sequence for clone 11–2 (1130 bp) was submitted to DDBJ/GenBank under the Accession No. of AB295600.The 1130 bp cDNA for VA opsin-like (Fig. 3) was used as a template for generating RNA probes.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
Midbrain
Neural Plate/Tube
Spinal Cord
 
19-20
stage 20
stage 20
stage 20
Ear/Otic Placcode
Hindbrain
Isthmus/MHB
Midbrain
Neural Plate/Tube
Spinal Cord
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.47074

Mouse

EmageMGI:1914840
EurexpressMGI:1914840
MGI GXDMGI:1914840

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona