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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TFF2
trefoil factor 2

Gene

Official Symbol	TFF2
Official Full Name	trefoil factor 2
CGNC ID	50784
also known as	TFF3, trefoil factor 2\|trefoil factor 2 (spasmolytic protein 1)\|trefoil factor 3, Tff2/3, pS2 protein, Breast cancer estrogen-inducible protein, PNR-2, cSP, Trefoil factor 1 precursor
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416743
Polypeptide	XP_416743
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.19939

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	7032	ENSG00000160181		MIM:182590
Mouse	21785	ENSMUSG00000024028	All phenotypic alleles (5):Targeted, knock-out(3) Targeted, other(2)	MGI:1306805
Xenopus	100496501, 378510			5824117
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418534
Ensembl Gene
KEGG	gga:418534

Entry 1

GEISHA Id	ChEST637n7	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCTCGAGCCCTTCCCAGCCAGAGGCCAGAGGGCTCCCAGAGCAATGGATCTGAAGGGGATCTGCTTGCTCTTTGTC ATCCTTGCTGTAGCCCTCATCAGCTCAACAGAAGGAAAACCACCATCAAAATGCCAGTGCAAAATAGCTGCCAGGGAGC GGAGGAACTGTGGTCCCCCAGGAATCTCAGCAGCAGACTGCAGGAGAGCTGGGTGCTGCTTCAATGCGTCGGTGCCGGG CGTCCCCTGGTGCTTCACTGCTAAACCAAAGAAAGTTAAGAAAGTGTGCCCTGCTGATCCTCGTATCCGAGTGAACTGT GGCTACCCTGGCATCACAGCTAAGGAGTGCATAAGCAGGAGATGCTGCTTCCGGGCACATCCTGCTGGTGTCCCCTGGT GCTTCTACCACCGCACAGTCGAAGAAGGCTGTTAAAGTAGAAACTTCCTGAAGAATCTGCTCAACTGGGAAATAACAGC CAGATGTCCCAGCTCCAACTTCCTGTTTGTAACAACAACGATTTCTAGGTGATTTTTTTCTTCTTTCTGAAGAAAATAT AACCACAACTTTTGTTCTCTCAGTAGGGTAGTACGTGCAGTTTTTCAACGTAATAAAAGAACTAAGATACAAAAAAAG
Comments	no specific expression detected stage 4-11.

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 16

Amnion

19-20

stage 20

Amnion

Entry 2

GEISHA Id	cSP.Shin.2006	Data Source	Publication
Complete cDNA Template Probe	show CGCGGCGTAGCCAAGAGGCCAGAGGGCTCCCAGAGCAATGGATCTGAAGGGGATCTGCTTGCTCTTTGTCATCCTTGCT GTAGCCCTCATCAGCTCAACAGAAGGAAAACCACCATCAAAATGCCAGTGCAAAATAGCTGCCAGGGAGCGGAGGAACT GTGGTCCCCCAGGAATCTCAGCAGCAGACTGCAGGAGAGCTGGGTGCTGCTTCAATGCGTCGGTGCCGGGCGTCCCCTG GTGCTTCACTGCTAAACCAAAGAAAGTTAAGAAAGTGTGCCCTGCTGATCCTCGTATCCGAGTGAACTGTGGCTACCCT GGCATCACAGCTAAGGAGTGCATAAGCAGGAGATGCTGCTTCCGGGCACATCCTGCTGGTGTCCCCTGGTGCTTCTACC ACCGCACAGTCGAAGAAGGCTGTTAAAGTAGAAACTTCCTGAAGAACCTGCTCAACTGGGAAATAACAGCCAGATGTCC CAGCTCCAACTTCCTGTTTGTAACAACAACGATTTCTAGGTGATTTTTTTCTTCTTTCTGAAGAAAATATAACCACAAC TTTTGTTCTCTCAGTAGGGTAGTACGTACAGTTTTCAACGTAATAAAAGAACTAAG
Citation	Shin M, Noji S, Neubüser A, Yasugi S. FGF10 is required for cell proliferation and gland formation in the stomach epithelium of the chicken embryo. Dev Biol. 2006 Jun 1;294(1):11-23. Epub 2006 Apr 17.
Copyright	Reprinted from Developmental Biology, 294, Masahiron Shin, Sumihare Noji, Annette Neubüser, and Sadao Yasugl, 11-23, Copyright 2006, with permission from Elsevier. Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	The authors state their probe came from Tabata and Yasugi, 1998.

Stage

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Location (click to highlight)

Comments (click to highlight)

31-42

stage 32

stage 36

stage 38

stage 42

Stomach

proventriculus

Entry 3

GEISHA Id	SP.Shin.2005	Data Source	Publication
Complete cDNA Template Probe	show GCGGCTCGAGCCCTTCCCAGCCAGAGGCCAGAGGGCTCCCAGAGCAATGGATCTGAAGGGGATCTGCTTGCTCTTTGTC ATCCTTGCTGTAGCCCTCATCAGCTCAACAGAAGGAAAACCACCATCAAAATGCCAGTGCAAAATAGCTGCCAGGGAGC GGAGGAACTGTGGTCCCCCAGGAATCTCAGCAGCAGACTGCAGGAGAGCTGGGTGCTGCTTCAATGCGTCGGTGCCGGG CGTCCCCTGGTGCTTCACTGCTAAACCAAAGAAAGTTAAGAAAGTGTGCCCTGCTGATCCTCGTATCCGAGTGAACTGT GGCTACCCTGGCATCACAGCTAAGGAGTGCATAAGCAGGAGATGCTGCTTCCGGGCACATCCTGCTGGTGTCCCCTGGT GCTTCTACCACCGCACAGTCGAAGAAGGCTGTTAAAGTAGAAACTTCCTGAAGAATCTGCTCAACTGGGAAATAACAGC CAGATGTCCCAGCTCCAACTTCCTGTTTGTAACAACAACGATTTCTAGGTGATTTTTTTCTTCTTTCTGAAGAAAATAT AACCACAACTTTTGTTCTCTCAGTAGGGTAGTACGTGCAGTTTTTCAACGTAATAAAAGAACTAAGATAC
Citation	Shin M, Watanuki K, Yasugi S (2005). Expression of Fgf10 and Fgf receptors during development of the embryonic chicken stomach. Gene Expr Patterns. 2005 Apr;5(4):511-6.
Copyright	Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	Authors indicated probe sequence could be found in Tabata and Yasugi, 1998, which was similar to Acc# CR407288.