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PRDM1 Gene Summary Expression Transcript Levels Other Species Expression JBrowse Gene Official Symbol PRDM1 Official Full Name PR/SET domain 1 CGNC ID 11462 also known as Blimp-1, PR domain zinc finger protein 1|B-lymphocyte-induced maturation protein 1|PR domain 1|PR domain containing 1, with ZNF domain gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id PRDM1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer 5’-TGGTACAGCAGCCAGTTCAG-3’ Reverse cDNA Template Primer 5’-AATTAACCCTCACTAAAGGTTTCCCTTCTGAGCACGGTC-3’ cDNA Template Length 743 Complete cDNA Template Probe show TGGTACAGCAGCCAGTTCAGAACACATAATGCAACCTAAACCTACCTCAGTGGTGTTGGCTGCCACCGGCGGTGAAGAA
Entry 2 GEISHA Id Blimp-1.Ha.2003 Data Source Publication Complete cDNA Template Probe show ATGAAAATGGACATGGAGGATGCTGACATGACCCTGTGGACGGAGGCTGATTTCGAAGAGAAGTGCACGTACATCGTCA
Citation Ha AS, Riddle RD. cBlimp-1 expression in chick limb bud development. Gene Expr Patterns. 2003 Jun;3(3):297-300. Copyright Reprinted from Gene Expr Patterns, Volume 3, Issue 3, Alice S. Ha and Robert D. Riddle, cBlimp-1 expression in chick limb bud development, Pages 297-300, Copyright 2003, with permission from Elsevier.
Copyright © 2003 Elsevier Science B.V. All rights reserved. Comments Authors state: Whole-mount and section in situ hybridizations using digoxigenin- and fluorescein-labeled antisense RNA probes were performed as previously described ( Adams et al., 2000). Because insufficient information provided to verify exact probe sequence, sequence was obtained from NCBI (Acc# AB278131).
Entry 3 Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-23 stage 23
stage 23
Wing Mesenchyme
Entry 4 GEISHA Id Prdm1.Zwane.2015 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show AGTGCGTGTCGGGGAGTGAGGGCGCGGGTGCGTGCTGTGCGTGCACGGGTGTGCAGCGCTGGGGTGCGCGGTGCCGGGC
Citation Zwane TB, Nikitina NV. Spatiotemporal expression analysis of Prdm1 and Prdm1 binding partners in early chick embryo. Gene Expr Patterns. 2015 Jan;17(1):56-68. Epub 2015 Feb 17. DOI: 10.1016/j.gep.2014.12.003. Copyright Copyright © 2014 Elsevier B.V. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (acc # XM_004940353.3).
Entry 5 GEISHA Id BLIMP1.Trevers.2023 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show CAACGTTTGCTCCAAGACCTTTGGCCAGCTCTCCAATCTGAAGGTGCACCTCCGAGTACACAGCGGAGAGAGACCATTT
Comments The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
Data from NCBI Unigene EST ProfileGga.46807
Mouse Frog Fruit Fly Zebra Finch Zebrafish
