GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

OTP
orthopedia homeobox

Gene
Official SymbolOTP
Official Full Nameorthopedia homeobox
CGNC ID54343
also known ashomeobox protein orthopedia
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_003642956
PolypeptideXP_003643004
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.22136
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene554220
Ensembl Gene
KEGGgga:554220

Entry 1

GEISHA IdOTP.Lorente-Cánovas.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGCTGTCTCACGCCGACCTCCTGGACGCCCGTCTCGGGATGAAAGATGCGGCCGAGCTGCTGGGACACCGGGAGGCGG
TGAAGTGCCGGCTGGGCGTGGGGGGCTCGGATCCGGGGGGTCACCCGGGAGACATGGCCCCGAACTCGGACACGGTGGA
AGGGACCACCCTGCTGCCGGGGGAGGACATCACCACGGTGGGATCCAATCCCAGCTCCTTGGCCGTCAGCGCCAAAGAC
GCCGACAAGCAGCAAGGCCAGCAGGGCGGCCAGAACCCCAGCCAGGCGGGACAGCAGCAGGGCCAGCAGAAGCAGAAGC
GGCACCGCACCCGCTTCACGCCGGCGCAGCTCAACGAGCTGGAGAGGAGCTTCGCCAAGACCCACTACCCGGACATCTT
CATGCGGGAGGAGCTGGCCTTGCGCATCGGCCTCACCGAGTCCCGGGTGCAGGTGTGGTTCCAGAACCGCCGGGCCAAG
TGGAAGAAGCGCAAGAAGACGACCAACGTCTTCCGAGCCCCGGGCACGCTGCTGCCGACGCCGGGGCTGCCGCAGTTCC
CCTCGGCCGCCGCCGCCGCCGCCGCCGCCATGGGCGACAGCCTCTGCTCCTTCCACGCCAACGACACGCGCTGGGCCGC
CGCCGCCATGCCCGGGGTGTCGCAGCTGCCGCTGCCGCCGGCGCTGGGCAGGCAGCAGGCCATGGCGCAGTCCCTGTCC
CAGTGCAGCCTGGCGGCCGGGCCGCCGCCCAACTCCATGGGGCTCTCCAACAGCCTTGCGGGCTCCAACGGCGCCGGGC
TGCAGTCGCACCTCTACCAGCCCGCCTTCCCCGGCATGGTGCCCGCCTCGCTGCCCGGCCCCAGCAACGTGACGGGCTC
GCCGCAGCTCTGCAGCTCCCCGGACAGCAGCGACGTGTGGCGGGGAACCAGCATCGCCTCCCTCCGCCGCAAAGCACTA
GAGCACACAGTCTCCATGAGCTTCACCTAA
CitationLorente-Cánovas B, Marín F, Corral-San-Miguel R, Hidalgo-Sánchez M, Ferrán JL, Puelles L, Aroca P. Multiple origins, migratory paths and molecular profiles of cells populating the avian interpeduncular nucleus. Dev Biol. 2012 Jan 1;361(1):12-26.
CopyrightCopyright © 2011 Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_003642956.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
stage 24
Isthmus/MHB
Rhombomeres
PAX7 antibody (brown)
in situ hybridization with OTP (blue)
25-30
stage 30
Isthmus/MHB
Rhombomeres
PAX7 antibody (brown)
in situ hybridization with OTP (blue)
31-40
stage 35
stage 40
Isthmus/MHB
Rhombomeres
PAX7 antibody (brown)
in situ hybridization with OTP (blue)

Entry 2

GEISHA IdOTP.Caqueret.2005Data SourcePublication
Complete cDNA Template Probeshow
CGAGCTGCTGGGGCACAGTGAGGCGGTGAAGTGCCGGCTGGGCGTAGGGGGCTCGGATCCGGGGGGACACCCGGGAGAC
ATGGCCCCGAACTCGGACACGGTGGAAGGGACCACCCTGCTGCCGGGGGAGGACATCACCACGGTGGGATCCAATCCTA
GCTCCTTGGCCGTCAGCGCCAAAGACGCCGACAAGCAGCAAGGCCAGCAGGGCGGCCAGAACCCCAGCCAGGCGGGACA
GCAGCAGGGCCAGCAGAAGCAGAAGCGGCACCGCACCCGCTTCACGTCGGCGCAGCTCAACGAGCTGGAGAGGAGCTTC
GCCAAGACCCACTACCCGGACATCTTCATGCGGGAGGAGCTGGCCTTGCGCATCGGCCTCACCGAGTCCCGGGTGCAGG
TGTGGTTCCAGAACCGCCGGGCCAAGTGGAAGAAGCGCAAGAAGACGACCAACGTTTTCCGAGCCCCGGGCACGCTGCT
GCCGACGCCGGGGCTGCCGCAGTTCCCCTCGGCCGCCGCCGCCGCCGCCGCCATGGGCGACAGCCTCTGCTCCTTCCAC
GCCAACGACACGCGCTGGGCCGCCGCCGCCATGCCCGAGGTGTCGCAGCTGCCGCTGCCGCCGGCGCTGGGCAGGCAGC
AGGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGGCGGCCGGGCCGCCGCCCAACTCCATGGGGCTCTCCAACAGCCT
TGCGGGCTCCAACGGCGCCGGGCTGCAGTCGCACCTCTACCAGCCCGCCTTCCCCGGCATGGTGCCCGCCTCGCTGCCC
GGCCCCAGCAACGTGACGGGCTCGCCGCAGCTCTGCAGCTCCCCGGACAGCAGCGACGTGTGGCGTGGCACCTCCATCG
CCTCCCT
CitationCaqueret A, Coumailleau P, Michaud JL. Regionalization of the anterior hypothalamus in the chick embryo. Dev Dyn. 2005 Jun;233(2):652-8.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
Hypothalamus
 
19-24
stage 20
stage 20
Hypothalamus
 
25-30
stage 26
stage 26
stage 26
stage 26
Brainstem Nuclei
Hypothalamus
Edinger–Westphal
31-40
stage 40
stage 40
Hypothalamus
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.22136

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona