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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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OTP
orthopedia homeobox

Gene

Official Symbol	OTP
Official Full Name	orthopedia homeobox
CGNC ID	54343
also known as	homeobox protein orthopedia
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642956
Polypeptide	XP_003643004
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22136

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	554220
Ensembl Gene
KEGG	gga:554220

Entry 1

GEISHA Id	OTP.Lorente-Cánovas.2012	Data Source	Publication
Complete cDNA Template Probe	show ATGCTGTCTCACGCCGACCTCCTGGACGCCCGTCTCGGGATGAAAGATGCGGCCGAGCTGCTGGGACACCGGGAGGCGG TGAAGTGCCGGCTGGGCGTGGGGGGCTCGGATCCGGGGGGTCACCCGGGAGACATGGCCCCGAACTCGGACACGGTGGA AGGGACCACCCTGCTGCCGGGGGAGGACATCACCACGGTGGGATCCAATCCCAGCTCCTTGGCCGTCAGCGCCAAAGAC GCCGACAAGCAGCAAGGCCAGCAGGGCGGCCAGAACCCCAGCCAGGCGGGACAGCAGCAGGGCCAGCAGAAGCAGAAGC GGCACCGCACCCGCTTCACGCCGGCGCAGCTCAACGAGCTGGAGAGGAGCTTCGCCAAGACCCACTACCCGGACATCTT CATGCGGGAGGAGCTGGCCTTGCGCATCGGCCTCACCGAGTCCCGGGTGCAGGTGTGGTTCCAGAACCGCCGGGCCAAG TGGAAGAAGCGCAAGAAGACGACCAACGTCTTCCGAGCCCCGGGCACGCTGCTGCCGACGCCGGGGCTGCCGCAGTTCC CCTCGGCCGCCGCCGCCGCCGCCGCCGCCATGGGCGACAGCCTCTGCTCCTTCCACGCCAACGACACGCGCTGGGCCGC CGCCGCCATGCCCGGGGTGTCGCAGCTGCCGCTGCCGCCGGCGCTGGGCAGGCAGCAGGCCATGGCGCAGTCCCTGTCC CAGTGCAGCCTGGCGGCCGGGCCGCCGCCCAACTCCATGGGGCTCTCCAACAGCCTTGCGGGCTCCAACGGCGCCGGGC TGCAGTCGCACCTCTACCAGCCCGCCTTCCCCGGCATGGTGCCCGCCTCGCTGCCCGGCCCCAGCAACGTGACGGGCTC GCCGCAGCTCTGCAGCTCCCCGGACAGCAGCGACGTGTGGCGGGGAACCAGCATCGCCTCCCTCCGCCGCAAAGCACTA GAGCACACAGTCTCCATGAGCTTCACCTAA
Citation	Lorente-Cánovas B, Marín F, Corral-San-Miguel R, Hidalgo-Sánchez M, Ferrán JL, Puelles L, Aroca P. Multiple origins, migratory paths and molecular profiles of cells populating the avian interpeduncular nucleus. Dev Biol. 2012 Jan 1;361(1):12-26.
Copyright	Copyright © 2011 Elsevier Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_003642956.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

stage 24

Isthmus/MHB
Rhombomeres

PAX7 antibody (brown)
in situ hybridization with OTP (blue)

25-30

stage 30

Isthmus/MHB
Rhombomeres

PAX7 antibody (brown)
in situ hybridization with OTP (blue)

31-40

stage 35

stage 40

Isthmus/MHB
Rhombomeres

PAX7 antibody (brown)
in situ hybridization with OTP (blue)

Entry 2

GEISHA Id	OTP.Caqueret.2005	Data Source	Publication
Complete cDNA Template Probe	show CGAGCTGCTGGGGCACAGTGAGGCGGTGAAGTGCCGGCTGGGCGTAGGGGGCTCGGATCCGGGGGGACACCCGGGAGAC ATGGCCCCGAACTCGGACACGGTGGAAGGGACCACCCTGCTGCCGGGGGAGGACATCACCACGGTGGGATCCAATCCTA GCTCCTTGGCCGTCAGCGCCAAAGACGCCGACAAGCAGCAAGGCCAGCAGGGCGGCCAGAACCCCAGCCAGGCGGGACA GCAGCAGGGCCAGCAGAAGCAGAAGCGGCACCGCACCCGCTTCACGTCGGCGCAGCTCAACGAGCTGGAGAGGAGCTTC GCCAAGACCCACTACCCGGACATCTTCATGCGGGAGGAGCTGGCCTTGCGCATCGGCCTCACCGAGTCCCGGGTGCAGG TGTGGTTCCAGAACCGCCGGGCCAAGTGGAAGAAGCGCAAGAAGACGACCAACGTTTTCCGAGCCCCGGGCACGCTGCT GCCGACGCCGGGGCTGCCGCAGTTCCCCTCGGCCGCCGCCGCCGCCGCCGCCATGGGCGACAGCCTCTGCTCCTTCCAC GCCAACGACACGCGCTGGGCCGCCGCCGCCATGCCCGAGGTGTCGCAGCTGCCGCTGCCGCCGGCGCTGGGCAGGCAGC AGGCCATGGCGCAGTCCCTGTCCCAGTGCAGCCTGGCGGCCGGGCCGCCGCCCAACTCCATGGGGCTCTCCAACAGCCT TGCGGGCTCCAACGGCGCCGGGCTGCAGTCGCACCTCTACCAGCCCGCCTTCCCCGGCATGGTGCCCGCCTCGCTGCCC GGCCCCAGCAACGTGACGGGCTCGCCGCAGCTCTGCAGCTCCCCGGACAGCAGCGACGTGTGGCGTGGCACCTCCATCG CCTCCCT
Citation	Caqueret A, Coumailleau P, Michaud JL. Regionalization of the anterior hypothalamus in the chick embryo. Dev Dyn. 2005 Jun;233(2):652-8.
Copyright	Copyright © 2005 Wiley-Liss, Inc.