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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SHOX
short stature homeobox

Gene

Official Symbol	SHOX
Official Full Name	short stature homeobox
CGNC ID	50824
also known as	short stature homeobox protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001079724
Polypeptide	NP_001073192
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.56387

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418669
Ensembl Gene
KEGG	gga:418669

Entry 1

GEISHA Id	ChEST927p1	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGGATCCAGCGCGGCCGAGGCCGGGGGATCCGTGTGGATAGCAGCGCGGGCAGCCATGGAAGAACTCACGGCTTTTGTA TCCAAATCTTTCGACCAGAAAAGCAAAGAGAGCGGCGGCGGCGGCGGCGGCGGCAACAAGAAGGAGACCATCACGTACC GGGAAGTTTTGGAGAGTGGGTTGGCTCGCTCCAGGGAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGG CAGCAATCATTGCCCCGTGCACCTTTTCAAGGACCACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGC AGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAAGCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGC TGAAACAAAGGAGAAGCAGAACCAATTTCACACTAGAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTA CCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGAGGCTGGGACTGTCTGAAGCTAGGGTGCAGGTAAGAGAAAGGCTC TATGTCTGGAAGCGTCACTGCTCGCTGCCGGCGTATCCCAGCGCGGTGCCTCCTCCGTCCCGAGCGGGAGGCGGAGGAG ACGAGTGCGGTACCGTCCTGACACCCTGCCCTGTCCGAGGGCAGCTACTCGCTCCTTGCGTTGCCTAGGAACGCGATTT AATTATTTTTTTTAAATTATTATTATTATTATTGACTGGGGGAGTGGTGGTGACGATGTGTCTGTAACTGTGCGATCGG CTTTATTATTATTATTGAATTTATCATCCTACTTTCCCTTGCATAAAAAAAAATTCAA
Comments	No specific expression detected stages 6-18.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-21

stage 21

Eye
Leg
Pharyngeal Arches and Clefts
Wing

Entry 2

GEISHA Id	Shox2.Tiecke.2006	Data Source	Publication
Complete cDNA Template Probe	show CGAAGCCTCTGTGTNTTNCATGAACCTACTTAATGGGGTCCAANCTGGNTAAGTAAACNACCGGTGCGCGCCTCGATGT TCAGTCAGTGTCCGACTAAAGCCAGAGATCAAGCTGAACAGGCAACGAATAGCACGAGACGACGATTCACTGACACTAC GACTGAAGCTCGACAACATACCGACGCTCATGCGGAGACTGACAGTGGCTTGTCGAACGGTGCGTGGTCAAACAAGCAA TTCGAGCAGAACACTGCAAGGATGCTCATCGGGCGCAGCAGTTCGAAGCTGCCGGGTGGCCCCTTACGTCAACGTGGGA AGCGCTGCGGATGCCCTTCCAGCAGGTTCAGGCGCAGCTACAGCTGGACAGCGCCGTGGCCCACGCGCACCACCACCTC CACCCGCACCTGGCCCACGCGCCCTACATGATGTTCCCCGCTCCGCCCTTCGGGCTCCCGCTCGCCACTTTGGCCGAAT CCGCCTCCGCCGCCTCCGTGGTGGCCGCCGCCGCCGCCGCTAAGACCACCAGCAAGAACTCGAGCATCGCCGACCTGCG GCTGAAGGCCAAGAAGCACGCGGCGCCTGGGGCTGTGACCGCCGCAGCGCTGCGCGGTCC
Citation	Tiecke E, Bangs F, Blaschke R, Farrell ER, Rappold G, Tickle C. Expression of the short stature homeobox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements. Dev Biol. 2006 Oct 15;298(2):585-96. Epub 2006 Jul 12.
Copyright	Reprinted from Developmental Biology, 298, Eva Tiecke, Fiona Bangs, Rudiger Blaschke, Elizabeth R. Farrell, Gudrun Rappold, and Cheryll Tickie, Expression of the short stature homebox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements, 585-596, 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
Comments	Authors said: "Shox2 (EST 603126448F1 from ARK-Genomics) which is listed in NCBI as Acc# BU111844.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 21

stage 23

Atria
Limb Buds
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Valves
Wing Mesenchyme

dorsal root ganglia

25-30

stage 25

stage 27

stage 30

Atria
Leg Mesenchyme
Limb Buds
Sinus Venosus
Wing Mesenchyme

31-35

stage 35

Wing
Wing Mesenchyme

Entry 3

GEISHA Id	SHOX.Decker.2011	Data Source	Publication
Complete cDNA Template Probe	show `GAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGGCAGCAATCATTGCCCCGTGCACCTTTTCAAGGACC ACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGCAGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAA GCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGCTGAAACAAAGGAGAAGCAGAACCAATTTCACACTA GAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTACCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGA GGCTGGGACTGTCTGAA`
Citation	Decker E, Durand C, Bender S, Rödelsperger C, Glaser A, Hecht J, Schneider KU, Rappold G. FGFR3 is a target of the homeobox transcription factor SHOX in limb development. Hum Mol Genet. 2011 Apr 15;20(8):1524-35.
Comments	The cDNA template used to generate the probe was obtained by PCR as described.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 21

Pharyngeal Arches and Clefts
Wing

25-30

stage 26

stage 28

stage 30

Leg Bones
Limb Buds

Entry 4

GEISHA Id	SHOX.Durand.2012	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `GAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGGCAGCAATCATTGCCCCGTGCACCTTTTCAAGGACC ACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGCAGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAA GCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGCTGAAACAAAGGAGAAGCAGAACCAATTTCACACTA GAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTACCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGA GGCTGGGACTGTCTGAA`
Comments	The sequence below was obtained from NCBI (acc # NM_001079724.1) using the information provided in the publication as described in Durand et al. 2012.