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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CHAMP1
chromosome alignment maintaining phosphoprotein 1

Gene

Official Symbol	CHAMP1
Official Full Name	chromosome alignment maintaining phosphoprotein 1
CGNC ID	50841
also known as	ZNF828, chromosome alignment maintaining phosphoprotein 1\|chromosome alignment-maintaining phosphoprotein 1\|zinc finger protein 828
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416932
Polypeptide	XP_416932
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.49209

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	283489	ENSG00000198824		MIM:616327
Mouse	101994	ENSMUSG00000047710	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1196398
Xenopus	100380176, 100036948			1016149
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418733
Ensembl Gene
KEGG	gga:418733

Entry 1

GEISHA Id	pgn1c.pk011.b12	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CTCCAGATCCAGAGAAATTAGTTTCAGCTGTGTCCTCAGACTCAGAAAAATCATCCCCTGATGCGTCCCCCGACCCCCA GAAGCAATCCCCTGATGCATCCCCAGACCCACAGAAGCCAGCCCCTGCTGTGTCCCCAGACCCACAGAAGCCAGCCGTG GCTGTGTCTCCAGAGCCCCGTCGCCATTCCCCTGCTGTATCACCAGAGCCCCGTCGCCATTCCCCAGCAATGTCTCCAG AGCCCCGTCGTCATTCCCCTGCTGTATCACCTGAGCCCCGTCGCCATTCTCCAGCCGTGTCTCCAGAGCCCCGTAGATA CTCTCCGGGTGTGTCACCAGAGCCAAAGAAACCTACTCCAGCTGTATCCCCTGAACCACGAAGGTATTCCCCAGCTGTG TCTCCAGAGCCTCGGAGGCATGCTTCTCAAATGCGTAGGCCTGCTTCTGCTGCTTCTCCTGAAATCCGGAGGCCTGCTC CTGCAGTTTCGCCAGAGTCATGGAGACCTGGTCCTACCGTTTCCCCTGAACCCTGGAGATCTACGCCTCATGAAATGCA AAAGTCTTCCACAGTTTCTCCCTGGGCTTCAAAGGCTTCCATAGAGTCTCGGAGGTCTGCCCCCGAGTCACGAAGGTCT GGCCCAGTTGCATCACCAGAGTCTAGGAGGCTTGTATCTGACTCATGGAAATCGACGTCCTTTTCTGAATCCCAGAAGT CCACTCTTGTTTCTACTGAGCCATGGAAACCCATCTCATCTGTTTACCCAGAAGGCTGGAAACCTGTTCTGTCCCCTGA CACGTGGAAGCATTCTTCCTCTGTTTCTTCTGAGCTTCNCAATCTAGTCATGCTGTTTCCTCTGAC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Unlabeled

7-12

stage 9

Midbrain
Neural Plate/Tube

19-24

stage 19

stage 20

stage 21

Hindbrain
Lateral Plate Mesoderm
Leg Mesenchyme
Limb Buds
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Surface Ectoderm
Wing Mesenchyme

Surface label could be in superficial mesoderm, not AER

25-26

stage 26

Limb Buds
Midbrain
Paraxial Mesoderm
Spinal Cord

Entry 2

GEISHA Id	ChEST663a9	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GAGGAACTCTGAAGCTTGCTCTTTATAAGGTGAAGTGCTGTGAAGACGACTATCGTAGAAAAATGGACATGTTGCAGAT ACTGCGTAAAACCACAGAACGCTTGGAATGTGATCACTGCAGCTTCAGAGGAACGGACTATGAGAACATACAAATTCAC ATGGGCACCATACACCCAGAGTATTGTGATGAAATGGATGCTGCTGGTTTGGGTAAACTTATCTTTTATCAGAAAAGTG CAAAACTGTTTCACTGCCACAAATGTTTCTTTACCAGCAAGATGTATTGCAACGTGTATTATCACATCACAGCACAACA TGCAGCACCAGAGAAATGGAACGAGGAGCGGAAAGGACAGGTAGAAGGAGGTTCAGATTCCTCCAAAAAGAATGGTGCT GCGGAGCCCCAGAAATGTACCCCTCCCCCTGAGTCTCTCAAACCTGCCCTTTCTCCTGAAGTCCCCAAACCTGAATCCA AGCTTCAGAAATCGTCAGTGTCCCCAGAGTCCCAGAAGTCAGCTCAGACTTCTTCCTCTGAGCCGGAGAGGTCAGCCCA GATCATGTCCCCAGATTCAGAAAAGTCAGTTCAGGCTGTGTCTCCAGATCCAGAGAAATTAGTTTCAGCTGTGTCCTCA GACTCAGAAAAATCATCCCCTGATGCGTCCCCCGACCCCCAGAAGCAATCCCCTGATGCATCCCCAGACCCACAGAAGC CAGCCCCTGCTGTGTCCCCAGACCCACAGAAGCCAGCCGTGGCTGTGTCTCCAGAGCCCCGTAGATACTCCCCGGGTGT GTCACCAGAGCCAAAGAAACCTACTCCAGCTGTATCCCCTGAACACGAAAGTATTCCCCAGCTGTGTCTCCAGAGCCTC GGAGGCATGCTTCTCAAATGCNGTAGCCTGCTTCTGCTTCTTCTCTTGAAATCCGGAGGCCT