GEISHA - A Chicken Embryo Gene Expression Database
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PCDH17
protocadherin 17

Gene
Official SymbolPCDH17
Official Full Nameprotocadherin 17
CGNC ID50861
also known asprotocadherin-17|cadherin
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_417021
PolypeptideXP_417021
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.51489
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human27253ENSG00000118946MIM:611760
Mouse219228ENSMUSG00000035566MGI:2684924
Xenopus100485388480219
Zebrafish561336ENSDARG00000027041ZDB-GENE-090608-3ZFIN:ZDB-GENE-090608-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene418825
Ensembl Gene
KEGGgga:418825

Entry 1

GEISHA IdChEST474c24Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GAGGATTGATACATAATGTATCAACAAATGAGTAGAGCATATACAATGTGAGTTTTGCTGTTTGAGTCAAAATTAACAT
GATTATGTGTGAAAGAAGTGTCATCCAAAGTACCACAAACAAAAGAATTAGAACATTTTTTTCTCTCTTTGGTATCTTT
GCAGTCACCACTGGAAAAAGAGACATCAATGGAAGATGAAGTTGAGTTATTTCTCTCATTCCTTATGTACATGTCTTAT
AAAACTGAAATAAAATATCTGTCACATGACTATAGAGAGAATGACTGAGCTAAGGGAAAGCAAGTTAAAAAACTAATAA
AATTGTACTGTACACTGTGAATAGAGCATAAGGCATTCTGTTTTATTTTGTTTATTATTTTTATTTTTTTTAGATTAAT
GAAATCAAGCAACTGAGAGTTCTTTAAAAGACTGGCCAATCAAATCAGGACTCTAAATCAGATCTTTTCTTTCCTTCTC
TTCTTTTCTGGTATACTTATCAGGAAAGAGAGTCTTCTTAACTATGATTTGCCACTTGAGGTATTAGGCTTTGAATTCC
AAGCCATATCCAGAAGTAAAAAATTGCACACAGTGGAGCAAGGTACATCATTCAAACAAACTTTCAACTGTTTGTTGCC
TAATGGAAGGGAAATTGCTAAGGTCAAAAAGGAGTCGGAAACCAAGCATAATGTGCACCCATTCATTATTATTTAATTA
CTTTATTTTGAGATTAGGCAGTGATTATTATTGCATTAATTCAAGTGGGAGTTTTGGCTATCAAGATTTATTGAAGTGT
AGCTGAATGAAACTTGATTAAGATTTTGACTTCTCTGGCCCTGTGGTGCTACAGGTTGGCATTCACATCTATCAGTCCC
TGTCTCCCCATATGGCTCAAAGTT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 16
stage 18
stage 18
Ear/Otic Placcode
Notochord
Pharyngeal Arches and Clefts
 

Entry 2

GEISHA IdPCDH17.Lin.2012Data SourcePublication
Complete cDNA Template Probeshow
GCACCCGCTTCCCCCTCACCAGTGCCCATGACCCAGATGCTGGAGACAACGGGCTGCGCACCTACCTTCTAACCCGTGA
CGACTACGGCCTCTTCTCTCTTGATGTGAAGTCCCGTGGTGATGGCACAAAATTTCCCGAGTTGGTCATCCAGAAGCCA
TTAGATCGTGAGGAGCAGAGCCACCACACTCTGGTGCTGACAGCACTGGATGGTGGTGACCCACCACGCTCGGGCACGG
TGCAGATCAATGTACGCCTCATTGACTCCAATGACAACAGCCCTGTCTTTGAGGCAGCCTCCTATGTGGTTGAACTGCC
AGAGAACGCACCGCTAGGGACAGCTGTTATTGACCTCAATGCTACTGATGCTGATGAGGGCACCAACGGTGAGGTGCTC
TACTCGTTCAGTGGCTATGCACCTGATCGCGTCCGTGACCTCTTTAGCATAGACCCACAGAGTGGCCTCATCCGTGTCA
AGGGCAACCTGGACTATGAGGAAAGTGGTCTTATAGAGATTGATGTCCAGGCTCGAGACCTGGGGCCCAACCCCATCCC
TGCTCACTGCAAGGTCACTGTCCGCCTCATTGACCGCAATGACAATGCTCCCACCATTGGCTTTGTCTCTGTTCGCCAG
GGAGCACTGAGTGAGGCTGCCCCACCAGGCACCGTCATTGCCCTTGTGCGGGTCACTGACCGTGACTCGGGTAAGAATG
GGCAGCTCCAGTGCCGGGTGCTAGGAGGTGGTGGTGGGCCTGGAGCTGTCCCTTTCACATTGGAGGAGAACTATGACAA
CTTCTACACTGTGGTCACCGACCGGCCCCTGGACCGTGAGGCACAGGATGAGTACAATGTGACCATCGTGGCACGTGAC
GGGGGCAACCCCCCACTCAACTCCACCAAGTCGTTCTCTGTCCGAATCCTCGATGAGAATGACAACCCACCCCGCTTCA
GCAAGAATCTTTATGTATTGCAGGTGCCCGAGAACAATATCCCTGGAGAGTACTTGGGTTCTGTCTTGGCTCAAGACCC
TGACCTAGGCCAAAATGGGACAGTCTCTTACTCCATTCTGCCTGGGCACGTGGGTGACGTATCCATCTACACCTATGTC
TCCGTCAACCCAACCAATGGTGCTATCTATGCCCTGAGGAGCTTTAACTATGAGCAGACAAAGCACTTTGAGTTTCGCG
TGCTGGCCAAGGACTCAGGTTCACCCCACCGTGAGAGCAACGCCACAGTACGCGTCACCGTGCTCGATGTCAATGACAA
TGCACCCCTCATTGTCCTGCCTGCCCTCATCAATGACACCGCTGAGCTGCAGGTGCCACGCAATGCTGGGGTGGGCTAT
CCTGTGGGCACTGTTCGTGCCCTGGACAGTGACTTTGGGGAGAGTGGGCGCCTCACCTATGAGATTGTGGAAGGCAATG
AGGAGCACCTCTTTGAGATGGATCCTACTAGTGGTGAGATACGCACCTTGCACCCCTACTGGGAGGAGCTCAGCCCTGT
GGCTGAACTAGTGGTAAAAGTCAGTGACCATGGCAAGCCCAGCCTCTCTGCGGTGGCCAAGCTCATTGTCAGGGCCTTG
GCAGGGCCCCTACCCGAGGCTGGCGAGCCACAGGTGAATGGCGAGCAGCATCGGCGACCGCACTGGGACTTGTCGCTGC
CCCTGATTGTGA
CitationLin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
CopyrightCopyright © 2011 Wiley Periodicals, Inc.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in the paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Notochord
 
19-24
stage 20
stage 24
stage 24
stage 24
stage 24
Notochord
Spinal Cord
Spinal Ganglia and Nerves
Higher magnification of boxed area in C.
25-30
stage 29
stage 29
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
Notochord
Spinal Cord
Spinal Ganglia and Nerves
Higher magnification of boxed area in E.
Pc17: green fluorescence
31-36
stage 34
stage 34
stage 36
stage 36
Notochord
Spinal Cord
Spinal Ganglia and Nerves
Higher magnification of boxed area in I.
Higher magnification of boxed area in K.
sg, sympathetic ganglion

Entry 3

GEISHA IdPCDH17.Lin.2013Data SourcePublication
Complete cDNA Template Probeshow
GCACCCGCTTCCCCCTCACCAGTGCCCATGACCCAGATGCTGGAGACAACGGGCTGCGCACCTACCTTCTAACCCGTGA
CGACTACGGCCTCTTCTCTCTTGATGTGAAGTCCCGTGGTGATGGCACAAAATTTCCCGAGTTGGTCATCCAGAAGCCA
TTAGATCGTGAGGAGCAGAGCCACCACACTCTGGTGCTGACAGCACTGGATGGTGGTGACCCACCACGCTCGGGCACGG
TGCAGATCAATGTACGCCTCATTGACTCCAATGACAACAGCCCTGTCTTTGAGGCAGCCTCCTATGTGGTTGAACTGCC
AGAGAACGCACCGCTAGGGACAGCTGTTATTGACCTCAATGCTACTGATGCTGATGAGGGCACCAACGGTGAGGTGCTC
TACTCGTTCAGTGGCTATGCACCTGATCGCGTCCGTGACCTCTTTAGCATAGACCCACAGAGTGGCCTCATCCGTGTCA
AGGGCAACCTGGACTATGAGGAAAGTGGTCTTATAGAGATTGATGTCCAGGCTCGAGACCTGGGGCCCAACCCCATCCC
TGCTCACTGCAAGGTCACTGTCCGCCTCATTGACCGCAATGACAATGCTCCCACCATTGGCTTTGTCTCTGTTCGCCAG
GGAGCACTGAGTGAGGCTGCCCCACCAGGCACCGTCATTGCCCTTGTGCGGGTCACTGACCGTGACTCGGGTAAGAATG
GGCAGCTCCAGTGCCGGGTGCTAGGAGGTGGTGGTGGGCCTGGAGCTGTCCCTTTCACATTGGAGGAGAACTATGACAA
CTTCTACACTGTGGTCACCGACCGGCCCCTGGACCGTGAGGCACAGGATGAGTACAATGTGACCATCGTGGCACGTGAC
GGGGGCAACCCCCCACTCAACTCCACCAAGTCGTTCTCTGTCCGAATCCTCGATGAGAATGACAACCCACCCCGCTTCA
GCAAGAATCTTTATGTATTGCAGGTGCCCGAGAACAATATCCCTGGAGAGTACTTGGGTTCTGTCTTGGCTCAAGACCC
TGACCTAGGCCAAAATGGGACAGTCTCTTACTCCATTCTGCCTGGGCACGTGGGTGACGTATCCATCTACACCTATGTC
TCCGTCAACCCAACCAATGGTGCTATCTATGCCCTGAGGAGCTTTAACTATGAGCAGACAAAGCACTTTGAGTTTCGCG
TGCTGGCCAAGGACTCAGGTTCACCCCACCGTGAGAGCAACGCCACAGTACGCGTCACCGTGCTCGATGTCAATGACAA
TGCACCCCTCATTGTCCTGCCTGCCCTCATCAATGACACCGCTGAGCTGCAGGTGCCACGCAATGCTGGGGTGGGCTAT
CCTGTGGGCACTGTTCGTGCCCTGGACAGTGACTTTGGGGAGAGTGGGCGCCTCACCTATGAGATTGTGGAAGGCAATG
AGGAGCACCTCTTTGAGATGGATCCTACTAGTGGTGAGATACGCACCTTGCACCCCTACTGGGAGGAGCTCAGCCCTGT
GGCTGAACTAGTGGTAAAAGTCAGTGACCATGGCAAGCCCAGCCTCTCTGCGGTGGCCAAGCTCATTGTCAGGGCCTTG
GCAGGGCCCCTACCCGAGGCTGGCGAGCCACAGGTGAATGGCGAGCAGCATCGGCGACCGCACTGGGACTTGTCGCTGC
CCCTGATTGTGA
CitationLin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
CopyrightCopyright © 2013 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 34
stage 35
stage 35
stage 35
stage 36
Blood Vessels
Surface Ectoderm
in situ (red): PCDH17
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.51489

Mouse

Emage
EurexpressMGI:2684924
MGI GXDMGI:2684924

Frog

Xenbase480219

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-090608-3
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