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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PCDH17
protocadherin 17

Gene

Official Symbol	PCDH17
Official Full Name	protocadherin 17
CGNC ID	50861
also known as	protocadherin-17\|cadherin
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_417021
Polypeptide	XP_417021
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.51489

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	27253	ENSG00000118946		MIM:611760
Mouse	219228	ENSMUSG00000035566		MGI:2684924
Xenopus	100485388			480219
Zebrafish	561336	ENSDARG00000027041	ZDB-GENE-090608-3	ZFIN:ZDB-GENE-090608-3

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418825
Ensembl Gene
KEGG	gga:418825

Entry 1

GEISHA Id	ChEST474c24	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GAGGATTGATACATAATGTATCAACAAATGAGTAGAGCATATACAATGTGAGTTTTGCTGTTTGAGTCAAAATTAACAT GATTATGTGTGAAAGAAGTGTCATCCAAAGTACCACAAACAAAAGAATTAGAACATTTTTTTCTCTCTTTGGTATCTTT GCAGTCACCACTGGAAAAAGAGACATCAATGGAAGATGAAGTTGAGTTATTTCTCTCATTCCTTATGTACATGTCTTAT AAAACTGAAATAAAATATCTGTCACATGACTATAGAGAGAATGACTGAGCTAAGGGAAAGCAAGTTAAAAAACTAATAA AATTGTACTGTACACTGTGAATAGAGCATAAGGCATTCTGTTTTATTTTGTTTATTATTTTTATTTTTTTTAGATTAAT GAAATCAAGCAACTGAGAGTTCTTTAAAAGACTGGCCAATCAAATCAGGACTCTAAATCAGATCTTTTCTTTCCTTCTC TTCTTTTCTGGTATACTTATCAGGAAAGAGAGTCTTCTTAACTATGATTTGCCACTTGAGGTATTAGGCTTTGAATTCC AAGCCATATCCAGAAGTAAAAAATTGCACACAGTGGAGCAAGGTACATCATTCAAACAAACTTTCAACTGTTTGTTGCC TAATGGAAGGGAAATTGCTAAGGTCAAAAAGGAGTCGGAAACCAAGCATAATGTGCACCCATTCATTATTATTTAATTA CTTTATTTTGAGATTAGGCAGTGATTATTATTGCATTAATTCAAGTGGGAGTTTTGGCTATCAAGATTTATTGAAGTGT AGCTGAATGAAACTTGATTAAGATTTTGACTTCTCTGGCCCTGTGGTGCTACAGGTTGGCATTCACATCTATCAGTCCC TGTCTCCCCATATGGCTCAAAGTT

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

stage 18

Ear/Otic Placcode
Notochord
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	PCDH17.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show GCACCCGCTTCCCCCTCACCAGTGCCCATGACCCAGATGCTGGAGACAACGGGCTGCGCACCTACCTTCTAACCCGTGA CGACTACGGCCTCTTCTCTCTTGATGTGAAGTCCCGTGGTGATGGCACAAAATTTCCCGAGTTGGTCATCCAGAAGCCA TTAGATCGTGAGGAGCAGAGCCACCACACTCTGGTGCTGACAGCACTGGATGGTGGTGACCCACCACGCTCGGGCACGG TGCAGATCAATGTACGCCTCATTGACTCCAATGACAACAGCCCTGTCTTTGAGGCAGCCTCCTATGTGGTTGAACTGCC AGAGAACGCACCGCTAGGGACAGCTGTTATTGACCTCAATGCTACTGATGCTGATGAGGGCACCAACGGTGAGGTGCTC TACTCGTTCAGTGGCTATGCACCTGATCGCGTCCGTGACCTCTTTAGCATAGACCCACAGAGTGGCCTCATCCGTGTCA AGGGCAACCTGGACTATGAGGAAAGTGGTCTTATAGAGATTGATGTCCAGGCTCGAGACCTGGGGCCCAACCCCATCCC TGCTCACTGCAAGGTCACTGTCCGCCTCATTGACCGCAATGACAATGCTCCCACCATTGGCTTTGTCTCTGTTCGCCAG GGAGCACTGAGTGAGGCTGCCCCACCAGGCACCGTCATTGCCCTTGTGCGGGTCACTGACCGTGACTCGGGTAAGAATG GGCAGCTCCAGTGCCGGGTGCTAGGAGGTGGTGGTGGGCCTGGAGCTGTCCCTTTCACATTGGAGGAGAACTATGACAA CTTCTACACTGTGGTCACCGACCGGCCCCTGGACCGTGAGGCACAGGATGAGTACAATGTGACCATCGTGGCACGTGAC GGGGGCAACCCCCCACTCAACTCCACCAAGTCGTTCTCTGTCCGAATCCTCGATGAGAATGACAACCCACCCCGCTTCA GCAAGAATCTTTATGTATTGCAGGTGCCCGAGAACAATATCCCTGGAGAGTACTTGGGTTCTGTCTTGGCTCAAGACCC TGACCTAGGCCAAAATGGGACAGTCTCTTACTCCATTCTGCCTGGGCACGTGGGTGACGTATCCATCTACACCTATGTC TCCGTCAACCCAACCAATGGTGCTATCTATGCCCTGAGGAGCTTTAACTATGAGCAGACAAAGCACTTTGAGTTTCGCG TGCTGGCCAAGGACTCAGGTTCACCCCACCGTGAGAGCAACGCCACAGTACGCGTCACCGTGCTCGATGTCAATGACAA TGCACCCCTCATTGTCCTGCCTGCCCTCATCAATGACACCGCTGAGCTGCAGGTGCCACGCAATGCTGGGGTGGGCTAT CCTGTGGGCACTGTTCGTGCCCTGGACAGTGACTTTGGGGAGAGTGGGCGCCTCACCTATGAGATTGTGGAAGGCAATG AGGAGCACCTCTTTGAGATGGATCCTACTAGTGGTGAGATACGCACCTTGCACCCCTACTGGGAGGAGCTCAGCCCTGT GGCTGAACTAGTGGTAAAAGTCAGTGACCATGGCAAGCCCAGCCTCTCTGCGGTGGCCAAGCTCATTGTCAGGGCCTTG GCAGGGCCCCTACCCGAGGCTGGCGAGCCACAGGTGAATGGCGAGCAGCATCGGCGACCGCACTGGGACTTGTCGCTGC CCCTGATTGTGA
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Notochord

19-24

stage 20

stage 24

Notochord
Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in C.

25-30

stage 29

stage 30

Notochord
Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in E.
Pc17: green fluorescence

31-36

stage 34

stage 36

Notochord
Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in I.
Higher magnification of boxed area in K.
sg, sympathetic ganglion

Entry 3

GEISHA Id	PCDH17.Lin.2013	Data Source	Publication
Complete cDNA Template Probe	show GCACCCGCTTCCCCCTCACCAGTGCCCATGACCCAGATGCTGGAGACAACGGGCTGCGCACCTACCTTCTAACCCGTGA CGACTACGGCCTCTTCTCTCTTGATGTGAAGTCCCGTGGTGATGGCACAAAATTTCCCGAGTTGGTCATCCAGAAGCCA TTAGATCGTGAGGAGCAGAGCCACCACACTCTGGTGCTGACAGCACTGGATGGTGGTGACCCACCACGCTCGGGCACGG TGCAGATCAATGTACGCCTCATTGACTCCAATGACAACAGCCCTGTCTTTGAGGCAGCCTCCTATGTGGTTGAACTGCC AGAGAACGCACCGCTAGGGACAGCTGTTATTGACCTCAATGCTACTGATGCTGATGAGGGCACCAACGGTGAGGTGCTC TACTCGTTCAGTGGCTATGCACCTGATCGCGTCCGTGACCTCTTTAGCATAGACCCACAGAGTGGCCTCATCCGTGTCA AGGGCAACCTGGACTATGAGGAAAGTGGTCTTATAGAGATTGATGTCCAGGCTCGAGACCTGGGGCCCAACCCCATCCC TGCTCACTGCAAGGTCACTGTCCGCCTCATTGACCGCAATGACAATGCTCCCACCATTGGCTTTGTCTCTGTTCGCCAG GGAGCACTGAGTGAGGCTGCCCCACCAGGCACCGTCATTGCCCTTGTGCGGGTCACTGACCGTGACTCGGGTAAGAATG GGCAGCTCCAGTGCCGGGTGCTAGGAGGTGGTGGTGGGCCTGGAGCTGTCCCTTTCACATTGGAGGAGAACTATGACAA CTTCTACACTGTGGTCACCGACCGGCCCCTGGACCGTGAGGCACAGGATGAGTACAATGTGACCATCGTGGCACGTGAC GGGGGCAACCCCCCACTCAACTCCACCAAGTCGTTCTCTGTCCGAATCCTCGATGAGAATGACAACCCACCCCGCTTCA GCAAGAATCTTTATGTATTGCAGGTGCCCGAGAACAATATCCCTGGAGAGTACTTGGGTTCTGTCTTGGCTCAAGACCC TGACCTAGGCCAAAATGGGACAGTCTCTTACTCCATTCTGCCTGGGCACGTGGGTGACGTATCCATCTACACCTATGTC TCCGTCAACCCAACCAATGGTGCTATCTATGCCCTGAGGAGCTTTAACTATGAGCAGACAAAGCACTTTGAGTTTCGCG TGCTGGCCAAGGACTCAGGTTCACCCCACCGTGAGAGCAACGCCACAGTACGCGTCACCGTGCTCGATGTCAATGACAA TGCACCCCTCATTGTCCTGCCTGCCCTCATCAATGACACCGCTGAGCTGCAGGTGCCACGCAATGCTGGGGTGGGCTAT CCTGTGGGCACTGTTCGTGCCCTGGACAGTGACTTTGGGGAGAGTGGGCGCCTCACCTATGAGATTGTGGAAGGCAATG AGGAGCACCTCTTTGAGATGGATCCTACTAGTGGTGAGATACGCACCTTGCACCCCTACTGGGAGGAGCTCAGCCCTGT GGCTGAACTAGTGGTAAAAGTCAGTGACCATGGCAAGCCCAGCCTCTCTGCGGTGGCCAAGCTCATTGTCAGGGCCTTG GCAGGGCCCCTACCCGAGGCTGGCGAGCCACAGGTGAATGGCGAGCAGCATCGGCGACCGCACTGGGACTTGTCGCTGC CCCTGATTGTGA
Citation	Lin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.