Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LMO7
LIM domain 7

Gene

Official Symbol	LMO7
Official Full Name	LIM domain 7
CGNC ID	12702
also known as	LIM domain only protein 7, LIM domain only protein 7 (LOMP) , F-box only protein 20, LOMP
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_417010
Polypeptide	XP_417010
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.50823

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4008	ENSG00000136153		MIM:604362
Mouse	380928	ENSMUSG00000033060	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:1353586
Xenopus	100216219, 100190776			949055
Zebrafish	553341, 558333	ENSDARG00000004930, ENSDARG00000053535	ZDB-GENE-030219-74, ZDB-GENE-060825-242	ZFIN:ZDB-GENE-030219-74, ZFIN:ZDB-GENE-060825-242

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418815
Ensembl Gene	ENSGALG00000016920
KEGG	gga:418815

Entry 1

GEISHA Id	ChEST163e19	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CCGGCGGAGGATTGACCGCCCGCCACCCGCTCTTTCTCCCGGCCATGGACGGCAGAGAGGATGCCGAGTGCGGCTGCGA GGCGGCGTTCGCAGAGGCGCGGAGATGGGTGGAGACAGTTACTGGGAAGAGCTTTGGAACCAAAGATTTTCGAGCAGCT CTAGAAAATGGAGTCCTGTTGTGCGATTTGATTAACAAGATCAAACCTGGCATTGTTAGGAAGATCAATCGTCTGTCAA CTCCAATAGCTGGCTTGGATAATATAAATGTTTTTCTGAAAGCTTGTGAAAATATTGGATTGAAAGAAGCTCAACTTTT TCATCCAGGAGACCTTCAGGATTTGTCCAATCGAGTTACAGTCAAACCAGAGGAGACCAACAGAAGAGTGAAAAACGTT TTGATTACACTATATTGGCTTGGGAGAAAAGCACAAAGTAACCCTTACTATAATGGTCCATATCTCAATCTTAAAGCAT TTGAGAAATTATTAGGGCAAGCACTGACTAAGGCACTTGAAGAGTCCAGCCACCTAAACAGAAGTGGCAGGGATAGTGG GTACGGTGATATTTGGTACGTGGACCGAGGGGAACCCTTTCCATCTTCAGCAAGCCACAAAAGAGACGATTCTTTGGAT AGCTTAGACTCTCTTGGCTCAAGGTCCTCCACAAGCTTTTCATCAGACATAACCTTGAAAGGTGGCATTGAAGGCTGTG ATAGTGACACAGACTCAGAACTGCCTTTCAAGATGCGTGACTCCCATAAAGATGACAGGTCCTATCGAAGGATTTCTGT AATTGAACCAAAACCTGCTACTGACTTCAATCGCTTCTTACCCACCAAAAACAAGCAGCCCACTTATATGCCAGCACC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Opaca

4-6

stage 5

Hensen's Node

7-12

stage 7

stage 9

stage 10

Anterior Intestinal Portal
Head Mesenchyme
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Somites
Unlabeled
extraembryonic mesoderm

13-18

stage 16

stage 17

Anterior/Second Heart Field
Foregut
Head Mesenchyme
Lung
Mesonephros
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Pharynx
Sclerotome
Splanchnic Mesoderm

19-20

stage 19

stage 20

Allantois
Foregut
Gut
Head Mesenchyme
Hindgut
Limb Buds
Midgut
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Splanchnic Mesoderm

Entry 2

GEISHA Id	LMO7.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show AGCACACTTGCTGGCCAAGGGAAGAAGAAAGGAGGCTTCAGGAGGAAGAAGAAGCAGCCCTGCGTTTTGAGCGAGAAAG GGAACTCCAAGAACTAGAGCTTGAGAGACGACGTAAAGAGAGGGAACAGCAGTATGCTGAGGAGCAGAGGCGGCAGGCA GAGATGGAGGAGCAGCAGGCGGCAGGCAGAGATGGAGGAGCAGAGGCGGCGGGCAGAGATGGAGGAGCAGAGGCAGCAA GCAGAACGGCAGAAGGAAATGTCAGTGGAGACATCTCAATACCAAAGACGTTATGAGCGCTATGAGGTATCTAAAAGCA ACAGAGAACCGATCTGGCCAACCTCTCATTGACAGGCATTATGAACGCTATGAATCTTCCAAAACCATCGAGGAGCGAC CTGGTCAGTCATTTTCTGACAGGAATAAATCTAAGTCAACTTCAGAGCTGACATGAATTCAGTGCAAACAGAAATAGTA CTCAGAGCAAGCATTCAGAGAGGTCTTGGAACACGAGTGAGTCACAGAAGGGGTCTCAGAACGGAGCACAATCTGTCTG CAGCAGAGTTAGAGAGACAACAAATCCTTCAGGAAATGAGGACAGAACACATCTCTACACACGGACAGCAGCTGGATTA GGCAACGCAGTTCCAGTGTGCATAAGGAGCCCATCAGTCTGCA
Comments	Images and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST860d14. Related paper: Anderson C, Khan MAF, Wong F, Solovieva T, Oliveira NMM, Baldock RA, Tickle C, Burt DW, Stern CD. A strategy to discover new organizers identifies a putative heart organizer. Nat Commun. 2016 7:12656. doi: 10.1038/ncomms12656.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Unlabeled

4-6

stage 5

stage 6

Hensen's Node
Neural Plate/Tube
Notochord

7-12

stage 7

stage 9

stage 10

stage 11

stage 12

Anterior Intestinal Portal
Aorta
Endoderm
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pharynx
Sclerotome
Spinal Cord
Splanchnic Mesoderm
Ventricles
extraembryonic mesoderm

HH12+, ventral view

13-18

stage 13

stage 14

Aorta
Blood Islands
Head Mesenchyme
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Outflow Tract
Pharyngeal Arches and Clefts
Pharynx
Tail
Ventricles

ventral view

19-24

stage 21

stage 24

Blood Vessels
Dermomyotome
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Ventricles
Wing Mesenchyme

Entry 3

GEISHA Id	LMO7.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGGCCGCCGAGCGCTAGCGAACTCCCTGCCGGGAGCGGGGGGAGGAGGAGGAGAAGGAAGGGGAGGAGGAGGAGGAGA CGGCGACGGGAGCGTTAAAAGGCGGCGGCTGAATGACAGCGGCTGTTCCCCGCGCCCGTCCCGGCGGAGGATTGACCGC CCGCCACCCGCTCTTTCTCCCGGCCATGGACGGCAGAGAGGATGCCGAGTGCGGCTGCGAGGCGGCGTTCGCAGAGGCG CGGAGATGGGTGGAGTTACTGGGAAGAGCTTTGGAACCAAAGATTTTCGAGCAGCTCTAGAAAATGGAGTCCTGTTGTG CGATTTGATTAACAAGATCAAACCTGGCATTGTTAGGAAGATCAATCGTCTGTCAACTCCAATAGCTGGCTTGGATAAT ATAAATGTTTTTCTGAAAGCTTGTGAAAATATTGGATTGAAAGAAGCTCAACTTTTTCATCCAGGAGACCTTCAGGATT TGTCCAATCGAGTTACAGTCAAACCAGAGGAGACCAACAGAAGAGTGAAAAACGTTTTGATTACACTATATTGGCTTGG GAGAAAAGCACAAAGTAACCCTTACTATAATGGTCCATATCTCAATCTTAAAGCATTTGAGAAATTATTAGGGCAAGCA TTGACTAAGGCACTTGAAGAGTCCAGCCACCTAAACAGAAGTGGCAGGGATAGTGGGTACGGTGATATTTGGTACGTGG ACCGAGGGGAACCCTTTCCATCTTCAGCAAGCCACAAAAGAGACGATTCTTTGGATAGCTTAGACTCTCTTGGCTCAAG GTCCTCCACAAGCTTTTCATCAGACATAACCTTGAAAGGTGGCATTGAAGGCTGTGATAGTGACACAGACTCAGAACTG CCTTTCAAGATGCGTGACTCCCATAAAGATGACAGGTCCTATCGAAGGATTTCTGTAATTGAACCAAAACCTGCTACTG ACTTCAATCGCTTCTTACCCACCAAAAACAAGCAGCCAACATATATGCCAGCACCCCTAAGGAAGAAAAGAACAGAGAA GAACGAAGACAACAGGAGGAGCTGGGCAAGTCCTGTCTACACAGAGTCAGATGGAACATTTTCAAGTGGACGTGAAAGG AATCCCGTAGCTTCCTGCCAAAATAGCAGAGCAGAATGTGGGCTTACAAATCCAGCTTCCCTGCAGATGGTCTATGAGT ATGACAGTGGCTCTGATTCAGAAGATGAAAGAAGGATGCCCGACGTGGTTATGGATGACTTAGCAAAACGTAGATTTCT AGTCCAAAAGAGCCCTGTAAGCTCTGCTGCACCTGGACATCATTTCGTGTTGCGCAATGACTCTCCTAAATCTTGCTCA CAAGAAAATTATTCGGCTGGTCCGCTAGCTGCAATGCTTGAACCACTGAGTAACCAGAGGAGGCAGAGGCAGTTGGATA CTAAGGTGGAAAACAAACCAGGCGTTAACATTTCTCCAGAATTATCTGGGTATTTTGATGAGGATGAGGAAGAAGAAAC AGTTATCCCAAACATCGAAAAAGATGATCTCTATTTTCGCAAGCTAAGTTCTTCAGCATCAAATACAGTGGTTCCTTTT GACAAATTTCTTCCTAAGTTTTGGACTCCAGCAGAAGAATTGCTATGGAAAAAAATCAGGAAATCCTCTTTCAAACCCT GGTATAAAGAGATTCAAGGGTTCAGTAGAAAGAAATCAGATTCTGAGGATATGGATTTTGCTTACAAACAAAGCTCTGC CCTTGTTGCTAACCAGCCAAGATCAAGTTTCGAATGGAATAGCAGTTGCAGAAGGGATCAAAGCTATAAGCCAACTGCT GAATATATGGGAAGCTCATTGTCACAGATTACAGAAGGAAAAATCTTGGAGGCTTCTGACCAGCCCAGTCAGTTTTTGT TACTTCAGGCCCTGCAAAAATACTCTGACTACTTGTCTTCTGAAACGAAGACCAAAATTGATCCTACTTCTGGCCCTAG GCTCATAAAATGTAGAAAGAATATTTCCTTTATACCAGGATGTGATGACGAAGGAGACACTGAAAATGGATATCCGTAC CCAGATCTAGAAAATGATGACTTGTTTGTTCGCAAAACTGGGGCTTTCCATATGAATCACGTTGTTCTCCAGGACCCCC AGTATTTCAGAAAATTCTCTGAGCAGGAGCCTCCTCTAGAGGGTGAAATAATTCTGCAACCTCGGGAAGGCCAACCTGT GATTCCAGATTTGGAAAAAGATGACATGATATTTCGTAAAATCCTCTCTCAGAAAAAAGAGGTGCCTTTATCAGGTGCT CCAGACAAGTATCACCCTGCGCTCTTTCCTGATCCTTGGAGTCTTCCAGAGGAAATCCGGTCCAAATTTCTGTGTTTAC TTGAAAAAAATGCAACACCTGAGGAAAGAAAAAGCAGTGGTAGAGTGTTGTCACCGTCTTCCCGCCATAAGAGGGACGA TATGCTGGCACGCAAGATTGAGTCTTGGAAAGTAGGAAGCAATATGCAGCCCGTAAATTTTATCCCAGGTCCATGCAGT GAAGAAGACTGGAAGAAGTGGGAAGCAATCAGGGAGGCCAGCAAAGTTAGACACAAGAAACGTCAGATGGTGGAGAGAC TGTTTCAAAAACTTTCTGATGAGCAAGGGAGTAAGTCTTTGAATGATGTCAGTGCAGAGGACCAGCAGTCATTGCGCAA AATTCGTTATGAAGAACTACAAAAGATAAAAGAACAGCTGCAAGAACAAGATCTAAAGTGGCAAGAAGATCTAGCAAAA TGGAAGAATCGTAGAAAGAGCTTCACTTCAGAATTGCAAAAGAAAAAGGAAGAAAGAGAAGAAATAGAAAGGAGAGCCT CTGAAGTTTCTGACAGGAGTAGCAAGCCACTGAAAGAAATGCAGCAGGAAAGGGAACACAAATATGATGGCAGATGGTC GTATTCACTGACTGATGATGTGTTTACTGAAGAAACAGCACCTACCACACGATCAACAGCAAAAGATTACCTGTTTGAG GAAGAAACCTCCTACAGCACTAAGGATGGCAAAAGCCAGTATCCTACTCAGAGGAGCAAGGAGAATCTACTGAAGCTGG AGAGCTCTGCCACACGTGAGGCTCCTGCTGTCTCAAAGAGTCTGGCGGAAGAGCAGAGTTCGGCTCTTTTGTCTACGCG CTACTCGGTGAATGCTCAAACTGGGTCAGCTCAGGTTTCAGCTTCTCTCCCTAGAAGTTACCAGAAAACTGATACCTCC AGGTTAACATCTGTGGTTACACCAAGACCTTTTGGTGTCCACTCCAGAGGAATCTCCTCACTTCCACGGTCTCTCACGA TGGATGATGCTCAGAAATACAATGGAGAAGTGGAAAAAGCTAAAGGAACTCAAACTTTAACCAGCAGTATGTTTTCACT ACCAGACTCTACATACTCTCTCTCCACCAGTGTACTCAGAAGGAGAGAAAATGCGAGTTTGTCAGAACATGACGATTCA AAATCCCTGGAACAGTACAGTGAATTGAGAATCAGTATGAACCAGAGACCTGGCTACAGTCACAACTTTGGGTTTACAA CAAATTGGACTTCTTCAGGGGCCTTAGTACAGACAGTTGAAGAAGATAGCCCTGCAGCACTTTGTCAGCTGCAGGTAGA TGATGAGATCATTGCTATCAACGGCACAAAGGTTTCACAAATGGACAGTAGTCAGTGGGAAGAAGCCATCACCAGAGCA CTAGAAACTGGAAACCTGGTCATGGATGTTAGACGATATGGAAAGAATGACTGGGGCAAAGACCAGCCTTCCCTGCCAC ATGTAAGACATAAAATCCTCAATCTCACCAGTATGGGTACCAACATTATAGGTACATCTGATAATAAATGGATTGATGC AACTTCTGGAGAACGCGTTTCAAGTGTCTCAACCATATCAACAAAAAGAGAATTCTCCAGCAGTCTTCAAAATTCTGGT ACAGAAACAAAATTGATAAATGGCATGCAAGGAGATCTTGGATCTAATGAACAAAGAGCATCTGAACCTATTTCTTTGA AAAACTTAAAAAGGCGGTCACAATTTTTTGAACAAGGAGGTCCAGAGCCTGCAATGCCTGATCTCCCAGTCCCATCCAT TAGTGCCCCAAGTCGTCGGGTTTGGGATCAAGAAGAAGAACGAAAACGACAGGAGAAATGGCAAAAGGAGCAGGATCGT TTATTGCAGGAGAAATACAAACGGGAACAAGAAAAACTGAGGGAAGAATGGCTACGAGCTAAGCAAGAAGCAGAAAAAG AAAACTCCAAATATTTAGACGAGGAACAAACTGTTATAACCTCAAACATAATCTCAGTCTCTACACGAGCTCCATCTGC CTCCAGCTGGAGGGCAAGCCCTGAAGTGAGTACTCCTGAGGAGCCAGAAGGAGATGGAGGAAGTGAGCTGGCAGCACAC TTGCTGGCCAAGGAAGAAGAAAGGAGGCTTCAGGAGGAAGAAGAAGCAGCCCTGCGTTTTGAGCGAGAAAGGGAACTCC AAGAACTAGAGCTTGAGAGACGACGTAAAGAGAGGGAACAGCAGTATGCTGAGGAGCAGAGGCGGCAGGCAGAGATGGA GGAGCAGAGGCGGCGGGCAGAAATGGAGGAGCAGAGGCGGCGGGCAGAGATGGAGGAGCAGAGGCGGCGGGCAGAGATG GAGGAGCAGAGGCAGCAAGCAGAACGGCAGAAGGAAATGTCAGTGGAGACATCTCAATACCAAAGACGTTATGAGCGCT ATGAGGTATCTAAAACAACAGAGAACCGATCTGGCCAACCTCTCATTGACAGGCATTATGAACGCTATGAATCTTCCAA AACCATCGAGGAGCGACCTGGTCAGTCATTTTCTGACAGGAATAAATCTAAGTCAACTTCAGAGCTGAATGAATTCAGT GCAAACAGAAATAGTACTCAGAGCAAGCATTCAGAGAGGTCTTGGAACACGAGTGAGTCACAGAAGGGGTCTCAGAAGG AGCACAACCTGTCTGCAGCAGAGTTAGAGAGACAACAAATCCTTCAGGAAATGAGGAAGAAAACATCTCTACACACGGA CAGCAGCTGGATTAGGCAACGCAGTTCCAGTGTGCATAAGGAGCCCATCAGTCTGTACAGCAGTAGTATGAGGAGAGGG GAGTCTTTGGACAATCTCGATTCTTCAAGAACAAGCTCGTGGAGGCACCACTCAAGGTTGAACCAGTCCTCCTCCACTT CATCTCTGTCCTCTAATCAGGATCACAGCCGCCCGGTGTCTACTTCAAACCGGGCCTACATGTGCACTCCTTCCTCTGC CAAAGCACCTCCTGTGACCACCTCTGTGAGAGCCCCACCTGCATCCCAGACAGCCCCCCGGGTGCAGTCTCCTGTCTCT GCTTCTCAACCAGGGTCGCAGATGCGCAGCAGGTCAGTCAGTGGGAAGAAAATCTGTTCATACTGTAATAACGTTCTGG GCAAAGGAGCAGCCATGATCATTGAGTCTCTTGGTCTTTGTTATCATTTACATTGTTTTAAGTGCGTTGCCTGTGAATG CGACCTTGGGGGATCCCGCTCTGGAGCTGAAGTCAGGATCCGAAACAACAAACTCTTCTGCAACGACTGCTATCTCAGA TTTAAAACTGGACAACCAACCTCCATGTGAAGCAAACCTAGATATGAAACCACTGTTGCAGATAGAAGAAGAGGTGATT GCTGCTGATGTAGATCTATAAATATATATATTGTGTGTGTGTTTTTTCTAAAAGTAACTCTTCCGCTTGTCTAGTCTTC ATAGCAATGCATTATATTCTTCATATAACTGTATTTTTATTTATGATAAAGTAATTGCAGTAAGGAAGTATCTGGGGAA AATGCTTTCACTTTTTCAGCTTCAAGTACTGAAAGCACAAGGGAGAAAAAGTATATTTTCGGTAATAACTTCAAAATAT TTTTGAGGCTTATAATCAACTAGTTGACGTTCCAATGGTATATGAAGAGAGTATTTTGTTTCTAAGCTCTTGAAATGAG CATTAGAGAAATACTTAATATAAATATATATTTGCAATTGCTGTCTTTATTTTTGACATATACTGAAAGTGAATTCTCT AGGTTAATATGAAGCTGCGTTTAAATGCACACAAATGTGTTTGCTTTCTGTACGCTGGTTTCTAAAATTGTGCTTTTTT GAAACTTAAATACAAAGAATTACCTGTTTGCTCAGTGGTGAAGACATAAAATTACATGGAATCCATTTAAGGGGAAAGA ATTCTCTTTTCCCTTTTGAAAAATGTAACTATCACTTTTTCCCTCCACAAACTAGCTGGAGAATGGTTGTTGAATTACA GTATATTTGTAAATAAAATTTCTGATGTTGCATTTA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_046901882).