Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

NFATC1
nuclear factor of activated T cells 1

Gene

Official Symbol	NFATC1
Official Full Name	nuclear factor of activated T cells 1
CGNC ID	9602
also known as	nuclear factor of activated T-cells, cytoplasmic 1\|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_418906
Polypeptide	XP_418906
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4772	ENSG00000131196		MIM:600489
Mouse	18018	ENSMUSG00000033016	All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(4)	MGI:102469
Xenopus	780197, 444346			876755
Zebrafish	568315	ENSDARG00000036168	ZDB-GENE-060503-677	ZFIN:ZDB-GENE-060503-677

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	420815
Ensembl Gene
KEGG	gga:420815

Entry 1

GEISHA Id	NFATC1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCTTCCACTGCCACTTTGAACTTAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCGATGTCTGTTTCTCCCTTCCG	cDNA Template Length	1207
Forward cDNA Template Probe	show CCCCTGCGATCTCGTCGCGTTCGGTGTCAATTTCTGAACTTAATATCCCATCACACGTCAAGGGTTGGCTTCTCATGTT TTTTCTCCTGGAAAATGTGGGATTTCCAGACTTTGGTGTTGGAAAGTATTGTTTCGTGGCTGGTGGTGGAAACAGTCTT CCCAGTGATTCGATGAACCTGGTAGAAAGCATGGGGTCGCAGCACGCGGTCGTCTGCAGTCCCAATGAACAGCTGTAGC GTGAGAGGCTCGCTTTCTAAGTAACCATGTAGCTGTACAATAGGGTGGCCCCCAGCAGATGCCTTCACAGCCCCTCGAC TGCCTTCTGTCTCATAATGAGCTCGGTGGTGGGATTTCTGCTGCACTTCAATACGCAGTTCATAAGGTCCTGAGTGAGA CGGCAGCTGCCAATCAAGGGCAGGCAGGGATGGGCTCATGTAGGACGTACGCGACAGAGACTTTGGTTTGGCCCACTGG TACCGATGCTGTGGCACAAACAAATACTGCTCGCAGAAGTTTCCTTTCCTGATATGTTGAAAGCTAGAGAAGTCTTCTG GTGACAAATCGGCAGTTGGCGATATGTTCCCATGGTCCTCGCCAGCCGGTTCAGTTTTGAGAGTCATGGACGGGGTGTG GTCAATGGCTGTCTTCCTTGACTTGATGGAAATCCCATCATTCATATCAATTGTGCTGTCGGTGGTGAGAACATTTATG GCAGCCCCAATGGCAGAGCTGGTATACTGGTTGGTGTTTCCCCCCCACGTCCTCATCTTTAACACTCCCCCCCCGTGAG TTTTGCTGTAAAAGCCTGGGGGAAGTGATTTGGTAAATAATACGTCCGCCCGCCCTTTGAGGCTGAACTTTCTCTTTTT TGCCGGGAAAATGAATGCCTTGGAGCGCCAACCCCCCAACCCAGTTTTCCTTTTTTTATCCTCGTCCTGGGAAATTTCC AATGGCAATTTCCTTTGAAGAACATAAAAAAAATGCAGGGCACCCACGCCCCCCTTGGTACCCTCCCTCTTTGTCGTGG CCTTTGGAGAGCCCCCCGCGCCCCGCCCCGAAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Lateral Plate Mesoderm
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Amnion
Blood Islands
Blood Vessels
Endocardium
Extraembryonic Mesoderm
Headfold
Heart
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Somites
extraembryonic endoderm

Low level expression in the Lateral Plate Mesoderm.
Low level expression in the Paraxial Mesoderm and Lateral Plate Mesoderm.

13-18

stage 13

stage 16

stage 18

Ear/Otic Placode
Endocardium
Heart
Neural Plate/Tube

19-24

stage 19

Ear/Otic Placode
Endocardium
Heart

stage 25

Endocardium
Head Mesenchyme
Heart
Leg Mesenchyme
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Somites
Wing Mesenchyme

Entry 2

GEISHA Id	NFATC1.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GCGGCTCGAGCAGATGGTCACCATGTGTGGGAAATGGAAGCCAAAACTGACAAAGAAATGTGCAAGCCAAATTCATTGG TGGTTGAGATACCACCTTTCCGCAATCAGAGAATTACCAGCCCTGTTCAGGTCAACTTCTATGTCTGCAATGGAAAGAG AAAGAGAAGCCAGTACCAGATTTTCACCTATCTTCCTGCTAATGTTCCAATTATAAAAACAGAACCCACAGATGACTAT GAGCCTGCTCAAACCTGTGGACCAATGAACCAAGGCTTAAGCCCTCTCTCTAAACCGTACTACAACCAGCAGATCATGA TGCCCCCTGATCCTGGTTCATGTCTCATGGCTGGCTTCGCCTCCTGTCAGCAGAGGAACGCGGTGATGTCACCCTCTCC CAACGCAAGCCCCAAGCTGCATGACCTTTCATCCTCTCCTTACAAGTGCATCCCCAACCCAGGCCACAGTCACCTCGGA CTTCAGCAGCCCGCTGGAGGTGTCCCCACCATACAGGAAGTGCCAAGGTCTATAGTTGTGCACCCAAGCTCCCCCGAGC AATCATCTCACATCATGCTGCAGCCGCAGAGACAGAGCAAAATGTCTGGTCACATGCTGAATTCATTTGAGCAACATAC TTCAGCCATTGTACTACCTGGCTTCCTGTGAGCTTCCTCTCATTTCAACAAATCTCCTCGTCAAAAACACAGCAGGCCC AAGCACGTCTCCATTACCACATCTTGACCGGAGTTCTC
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.