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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ITGB1
integrin subunit beta 1

Gene

Official Symbol	ITGB1
Official Full Name	integrin subunit beta 1
CGNC ID	49025
also known as	integrin beta-1\|CSAT antigen\|JG22 antigen\|RGD-receptor\|integrin beta1D\|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001039254
Polypeptide	NP_001034343
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.111

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	44885			FBgn0004657
Human	3688	ENSG00000150093		MIM:135630
Mouse	16412	ENSMUSG00000025809	All phenotypic alleles (18):Targeted, knock-out(4) Targeted, other(14)	MGI:96610
Xenopus	394767, 397755, 399443			946724
Zebrafish	556734, 570216	ENSDARG00000071863, ENSDARG00000053255	ZDB-GENE-060803-2, ZDB-GENE-030909-10	ZFIN:ZDB-GENE-060803-2, ZFIN:ZDB-GENE-030909-10

Gene Ontology

Molecular Function	metal ion binding, protein binding, receptor activity
Biological Process	cell-matrix adhesion, integrin-mediated signaling pathway, multicellular organismal development
Cellular Component	integrin complex, lamellipodium, melanosome, plasma membrane, ruffle

Links to other databases

Entrez Gene	374058
Ensembl Gene	ENSGALG00000007145
KEGG	gga:374058

Entry 1

GEISHA Id	B1INTEGRIN.Blackmore.2006	Data Source	Publication
Complete cDNA Template Probe	show CGCGGAGCGAGGCCACGCCGTGCCCAGCGCAGCTCCTGGGGCAGAGCCGGAGCCGGGCGGGCCGGAGCGCGCCCCCTGG CAGGAGCGGCGCCGCGGCCATGGCCGAGACTAATTTAACATTGCTCACGTGGGCTGGCATTCTCTGTTGCTTGATATGG AGTGGATCTGCTCAGCAAGGTGGAAGTGACTGCATAAAAGCCAACGCAAAATCATGTGGGGAATGTATACAGGCAGGAC CAAACTGTGGTTGGTGTAAAAAAACAGACTTTCTGCAAGAAGGAGAACCAACATCTGCCCGATGCGATGACTTGGCAGC GCTGAAGAGTAAAGGCTGTCCTGAGCAAGATATAGAAAATCCCAGAGGTAGCAAACGTGTGCTTGAAGATAGAGAAGTA ACAAATCGTAAGATAGGTGCTGCAGAGAAGCTGAAACCAGAGGCCATTACACAGATCCAGCCACAAAAATTAGTACTGC AACTAAGAGTCGGGGAACCGCAAACATTTTCATTAAAATTTAAGAGAGCTGAAGATTACCCCATTGACCTTTATTATCT TATGGACCTCTCCTATTCTATGAAAGATGATTTAGAGAATGTGAAAAGCCTTGGCACAGCTCTGATGCGTGAAATGGAA AAAATAACCTCAGATTTTCGAATTGGATTTGGCTCTTTTGTGGAGAAAACTGTGATGCCATATATAAGTACAACACCAG CCAAACTGAGAAATCCTTGTACAGGTGACCAGAACTGTACGAGTCCGTTTAGCTATAAAAATGTGCTCAGTCTTACTAG TGAAGGAAATAAGTTCAATGAGCTTGTAGGTAAACAGCACATTTCTGGGAATCTGGATTCTCCTGAAGGTGGATTTGAT GCAATAATGCAAGTTGCTGTTTGTGGGGACCAGATTGGATGGAGAAATGTTACACGGCTGTTGGTGTTTTCCACGGATG CTGGATTTCACTTTGCAGGAGATGGTAAACTTGGTGGAATTGTTTTACCAAATGATGGGAAATGTCACCTGGAAAATAA TATGTACACAATGAGCCACTATTACGATTATCCCTCTATTGCTCATCTGGTACAGAAGCTTAGTGAGAACAATATTCAG ACAATTTTTGCTGTTACTGAGGAGTTTCAGGCAGTTTATAAGGAACTGAAAAACCTGATACCAAAATCAGCAGTGGGAA CGTTGTCTTCCAATTCCAGCAATGTCATTCAGTTGATCATTGATGCATACAATTCCCTTTCTTCAGAGGTGATCCTGGA AAACAGTAAGCTACCAAAAGAAGTGACAATCAGTTACAAATCATACTGCAAGAATGGAGTGAATGACACGCAGGAAGAT GGAAGAAAATGTTCCAACATTTCAATAGGAGATGAGGTTAGGTTTGAGATTAACGTAACAGCAAATGAATGTCCAAAGA AAGGGCAAAATGAAACAATTAAAATTAAACCACTGGGGTTCACTGAAGAAGTGGAAATTCATCTCCAGTTCATCTGTGA CTGTCTGTGTCAAAGCGAAGGAGAACCTAACAGCCCTGCCTGCCACGACGGAAATGGGACATTTGAATGTGGTGCATGC AGATGTAATGAAGGACGTATCGGAAGACTTTGTGAATGTAGTACAGATGAAGTAAATAGTGAGGATATGGATGCTTACT GCAGAAGGGAGAACAGTACAGAAATATGCAGCAACAATGGAGAGTGCATTTGCGGACAGTGCGTATGCAAGAAAAGAGA AAACACCAACGAAGTGTATTCTGGCAAATATTGTGAATGTGATAACTTCAACTGCGATCGATCAAACGGTTTGATTTGT GGAGGAAATGGTATCTGCAAATGCAGAGTGTGTGAGTGTTTCCCCAACTTCACCGGCAGTGCTTGCGATTGTTCTTTGG ATACCACTCCATGCATGGCAGGGAACGGACAGATATGCAACGGAAGAGGAACTTGTGAATGTGGCACTTGTAATTGCAC AGATCCCAAATTCCAAGGCCCCACATGTGAGATGTGTCAGACTTGCCTTGGTGTCTGTGCAGAGCACAAGGACTGTGTT CAGTGCAGAGCTTTTGAGAAGGGAGAAAAAAAGGAAACGTGTTCTCAGGAATGCATGCATTTTAACATGACACGGGTAG AAAGTCGAGACAAATTGCCACAGCCCGGCCAGCCCGATCCGCTGTCTCACTGCAAAGAAAAGGACGTTGATGACTGCTG GTTCTACTTCACATACTCTGTCAATTCCAATGGTGAAGCCAGTGTCCATGTGGTAGAGACTCCAGAATGCCCTAGTGGC CCTGACATCATACCCATTGTAGCTGGCGTGGTTGCTGGAATTGTTCTTATTGGACTTGCATTGTTATTGATTTGGAAAC TACTGATGATCATTCATGACAGGAGAGAATTTGCTAAATTTGAAAAGGAGAAGATGAATGCCAAGTGGGATACGGGTGA AAATCCTATTTACAAGAGTGCAGTGACAACTGTGGTCAATCCTAAATATGAGGGAAAATGAACACTGCTTGTGTAACTT CACGACACTGTATGCAGCGTAGCAATTTTTGTAGTCACAGTAAGATAGATTTAGGGCAAACTGCAGTGATTTTACTAAT TCATTACATATAGGTTTGTTTTCCTGTTCAGGTTTTGAGAATGTACCATATGTAATTTTTTTTTTTATGTTTATTTTTA ATTTCTTTTGCAAATAAAAATCAGTGCCAGGGGTCTGACAAAAAAAAAACCAACAAAAACTTGAGACTGTGTAGCTTAG TCAGCTGAGGTCACATGGTGCCTTTTTGACCTTTTCCACTCCCGTGCTGTGAATCTACATCTTCTACAGGGTGTGATAG TGCTTTGACAAGACTGGGAGGGAACTGGTTAAAGCATGAGGGCTCTGCCTAGCCATTTAGCGTTACAATTTGTAGCTTT ACAGGGAAATCAGGGCTTGAGTTTGCAGATATATTTAAGCTCATGTAGCATGGAGCTGGTGAATTACTGGGCTTCTGCT TGCTAGACATATGATTAAGTAGATGGTAAGTTGAATGAGTTGGAAATGAGCAGCGTAAAAGGTGGAAAAAGTGTGAGCA TGCTTATTTTTAATTGTTATAATTGCTTATTGCCAGGTTATGGTTAAGATGAAAGGGTTTGGAAAGAATTCTAAGAGGG AAAAAAAATAGCTTTAAAACACGTGCCATTACTGAAAAAGTTGCTGACTGGTAACTTGCTTCATTTTTCTTTGTAAATT CAAGCCCTGGTTGGGCAGTATCATGAAGTGCTTTACCAAGACATCCTCAAAACACATAAGGGCCTTACATCATACTGTG TCTTTCTTGTGTAATGTTTCTTTAGTCCGGTGCTTTGTCACACTCCTAATCTTTTTAACGTATTTGGTTGCGATTCTTT GTAATATTTTTGTACCAACACAAGCGTTTTTTTTTTCTTTTTGGGCAGTCTTAGCTGTAAATTTGCCTTTGCCCTGTAG CTAAGATTGCGTAGTTTGTCATGTGACAAGTCACACATTTTTGCCATGTGCCATGTATATTTGCCTTTGACCATTCAAA CTGCATTATAGTCATATCCTTGTTTTAAGTGCCTTTTTATTTTAACAGATGTTCACTTTTTACAGTGCTATTCCTGAAG TTATTTATTAAATAAAAGTACCTTAAAATAC
Citation	Blackmore M, Letourneau PC. L1, beta1 integrin, and cadherins mediate axonal regeneration in the embryonic spinal cord. J Neurobiol. 2006 Dec;66(14):1564-83.
Copyright	copyright 2006 Wiley Periodicals, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001039254.2

Stage

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31-42

stage 35

stage 42

Spinal Cord

Entry 2

GEISHA Id	ITGβ1.Cui.2019	Data Source	Publication
Complete cDNA Template Probe	show GTTGCTTGATATGGAGTGGATCTGCTCAGCAAGGTGGAAGTGACTGCATAAAAGCCAACGCAAAATCATGTGGGGAATG TATACAGGCAGGACCAAACTGTGGTTGGTGTAAAAAAACAGACTTTCTGCAAGAAGGAGAACCAACATCTGCCCGATGC GATGACTTGGCAGCGCTGAAGAGTAAAGGCTGTCCTGAGCAAGATATAGAAAATCCCAGAGGTAGCAAACGTGTGCTTG AAGATAGAGAAGTAACAAATCGTAAGATAGGTGCTGCAGAGAAGCTGAAACCAGAGGCCATTACACAGATCCAGCCACA AAAATTAGTACTGCAACTAAGAGTCGGGGAACCGCAAACATTTTCATTAAAATTTAAGAGAGCTGAAGATTACCCCATT GACCTTTATTATCTTATGGACCTCTCCTATTCTATGAAAGATGATTTAGAGAATGTGAAAAGCCTTGGCACAGCTCTGA TGCGTGAAATGGAAAAAATAACCTCAGATTTTCGAATTGGATTTGGCTCTTTTGTGGAGAAAACTGTGATGCCATATAT AAGTACAACACCAGCCAAACTGAGAAATCCTTGTACAGGTGACC
Citation	Cui R, Lwigale P. Expression of the heparin-binding growth factors Midkine and pleiotrophin during ocular development. Gene Expr Patterns. 2019 Jun;32:28-37. Epub 2019 Feb 27. DOI: 10.1016/j.gep.2019.02.001.
Copyright	Copyright © 2019 Elsevier B.V.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Cui et al. 2019.