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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RXRA
retinoid X receptor alpha

Gene

Official Symbol	RXRA
Official Full Name	retinoid X receptor alpha
CGNC ID	1890
also known as	retinoic acid receptor RXR-alpha
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642291
Polypeptide	XP_003642339
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	417143
Ensembl Gene	ENSGALG00000002626
KEGG	gga:417143

Entry 1

GEISHA Id	pgp1n.pk002.k3	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCCGTGTGTGTGTGTGTGTGTGTTTTTCGCCGCCGCCGCCGCTCTCCACCGAGCCCCTTGGCATGAGTTAAGCACCAG CGATGGACACCAAACACTTCCTGCCACTGGATTTCTCAAACCAAGTCAATTCCACATCCCTGAACTCCCCGACGAGCCG AGGCCCCATGGCCACCCCATCCCTGCACCCGTCCATCGGGCCGGGCATCGGCTCCTCGCTGGGCTCCCCGGGCCAGCTG CACTCACCCATCAGCACCCTGAGCTCACCCATCAATGGCATGGGGCCACCCTTCTCCGTCATCAGCTCCCCCATGGGCC CACACTCGATGTCTGTCCCCTCCACGCCCAGCCTGGGATTCGGCACCAGCAGCCCACAGCTCAACTCACCCATGAACCC CGTCAGCAGCTCAGAAGACATCAAGCCACCCCTGGGGCTCAATGGAGTCCTCAAAGTGCCAGCACATCCCTCAGGAACA ATGGCCTCCTTCACCAAGCACATATGTGCCATCTGCGGGGACAGATCTTCAGGTAAACATTATGGGGTGTACAGCTGCG AGGGCTGCAAAGGCTTCTTCAAACGCACGGTGAGGAAGGACCTGACCTACACCTGCCGTGACAACAAGGACTGCTTGAT TGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTA

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Face Mesenchyme
Spinal Cord
Tail

13-18

stage 17

Face Mesenchyme
Spinal Cord

19-22

stage 19

stage 22

Eye
Face Mesenchyme
Hindbrain
Leg Mesenchyme
Limb Buds
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Tail

Entry 2

GEISHA Id	RXRa.Cui.2003	Data Source	Publication
Complete cDNA Template Probe	show GGGATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAGAG TACTGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCT CTTCAACCCCGACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAG GCGTATTGCAAGCACAAATACCCCGACCAGCCCGGGAGGTTCGCCAAGCTCCTGCTCCGTCTGCCAGCCCTACGGTCCA TCGGCCTCAAATGCCTGGAGCACCTCTTCTTCTTCAAGCTAATAGGCGACACGCCGATCGACACCTTCTTGATGGAAAT GCTGGAAGCACCCCATCAAATGACTTAGAGAACTGCCGCTGGCTCAGTCCCTCACCCGGCCAGGGCCACGCGGGCTCCG TCCTCTGCTTCCTCCTCCTCAGCCCCAGCCCCCTTCCCTCTGCTCCCCAAATGCTGGAGGCACCGTCCGAGCTTCTCCG CCTGGTCCCCGGGGCGAACCCGCACCTCCTTGCCGCCTCCTCACGTTGACCCTTCTGTCCGTTCGCTGTCACTGCTGCA TCTAAAGACCTCTGATGGCTGT
Citation	Cui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright	"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	According to the authors, Antisense riboprobes were prepared from chicken RXRα (nt 19362589) [Seleiro et al 1995]. The sequence below was obtained from that paper.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Widespread Expression

Comparison of several genes

7-11

stage 7

stage 8

stage 11

Endoderm
Neural Crest
Splanchnic Mesoderm
Surface Ectoderm
Widespread Expression

Comparison of several genes
Precardiac region

Entry 3

GEISHA Id	RXRα.Hoover.1998	Data Source	Publication
Complete cDNA Template Probe	show ATCCTGCTGGCCACGGGGCTGCACGTGCACCGCAACAGCGCGCACAGCGCCGGTGTCGGGGCCATCTTTGACAGAGTAC TGACAGAACTCGTGTCGAAGATGCGAGACATGCAGATGGACAAGACAGAGCTGGGCTGCCTGCGAGCCATCGTCCTCTT CAACCCCGACTCAAAAGGTCTCTCCAACCCGGCTGAAGTGGAGGCATTACGGGAGAAGGTGTACGCATCGCTGGAGGCG TATTGCAAGCACAAATACCCCGACCAGCCCGGGAGGTTCGCCAAGCTCCTGCTCCGTCTGCCAGCCCTACGGTCCATCG GCCTCAAATGCCTGGAGCACCTCTTCTTCTTCAAGCTAATAGGCGACACGCCGATCGACACCTTCTTGATGGAAATGCT GGAAGCACCCCATCAAATGACTTAGAGAACTGCCGCTGGCTCAGTCCCTCACCCGGCCAGGGCCACGCGGGCTCCGTCC TCTGCTTCCTCCTCCTCAGCCCCAGCCCCCTTCCCTCTGCTCCCCAAATGCTGGAGGCACCGTCCGAGCTTCTCCGCCT GGTCCCCGGGGCGAACCCGCACCTCCTTGCCGCCTCCTCACGTTGACCCTTCTGTCCGTTCGCTGTCACTGCTGCATCT AAAGACCTCTGATGGCTGT
Citation	Hoover F, Glover JC. Regional pattern of retinoid X receptor-alpha gene expression in the central nervous system of the chicken embryo and its up-regulation by exposure to 9-cis retinoic acid. J Comp Neurol. 1998 Sep 7;398(4):575-86.
Copyright	copyright @1998 WILEY-LISS, INC.
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Hoover et al.1998.