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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ARNT
aryl hydrocarbon receptor nuclear translocator

Gene

Official Symbol	ARNT
Official Full Name	aryl hydrocarbon receptor nuclear translocator
CGNC ID	49009
also known as	aryl hydrocarbon receptor nuclear translocator, HIF-1B, Aryl hydrocarbon receptor nuclear translocator
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204200
Polypeptide	NP_989531
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.8458

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	41084			FBgn0264075
Human	405	ENSG00000143437	MIM:126110	MIM:126110
Mouse	11863	ENSMUSG00000015522	All phenotypic alleles (9):Targeted, knock-out(3) Targeted, other(6)	MGI:88071
Xenopus	100144695, 399025			855449
Zebrafish	493634		ZDB-GENE-060126-7	ZFIN:ZDB-GENE-060126-7

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374026
Ensembl Gene	ENSGALG00000000751
KEGG	gga:374026

Entry 1

GEISHA Id	pgm2n.pk007.l20	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show AGGAAGAGAGAGCCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGC AAACCTCTGGAGAAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATG CAGACCAGAACAAAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAACGCTTTCACACC ATCGCGGCCCGCTGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCA GGCCGGATCCTGGCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGAC CGGCGTTCGCAGCCCAGCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGG CACCCCGGCCTCCTTCAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCT GGCCGCAGTGCGGGCTTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGG GGATGTGGCCGCAGTGGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGA GGCCTTCCCAGACATGCTGACCATGCTGGGAGACCAAGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGGACATAT TCCCTTCTTTTTCAGAGTAAACCCGAGATGGGGGGGGGGGAANCT
Comments	no specific expression detected for stages 4-23 (low level, widespread or ubiquitous)

no images

Entry 2

GEISHA Id	ARNT.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCTTGATTTTGATGATGATGGCG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGCTGGCAGGAATGGCTTTG	cDNA Template Length	1659
Forward cDNA Template Probe	show CTGGTNGCATGGAGCTGCCGTAGATCTCCCCAAACCTCGGGGTCCCTCTCCTGGTTAAAGNAGGCTCTCTGCCTTCTCC AGCAGGTTTGCTGTGCTCCGGGACCAGCAGCACTCACGGGCTGCACAGGAACCTGNGCNTGGTCGTACCCGGCNAGGCT CTCTCTTCCTGGGACCACTTCCAACTCTGTCTGTTGAGGCTGCTGCTGCTGCCTTGAGGGCANCTGNGCTGTGNCCATC TCCAGGGAAAGGCTGACACTCTGCNCCAGCTGGGGNCTCTNCATTGGGTTTGATAGGNCANGCNGAGAGTCCTGGCNTG AGNTCTTGACGTTGGTGTTGGTACANATGATGTACTCAATTTCATCCNAGTAAGGGTTCTGGAAGGTAAAGGANCTGGT TCTCATCCNGAGCNATTCCCGGTTTTTGNATCGGAANCGNAACATGACTGACANAACCTGGCCTTTTAACTTCACCANC TGCTGAAAGCTGNCCCGCAAAANCTGCTGGTCCTCTGGGNGGAANAAATCCACAATGTCTTTCCCCANAAGTTCCTGTG GCTGGTANCNAANAGTAACCACACAGCGGTGGTCTATGAAGGTGAAAATGCNTTCCNTGTTGTGCCGGGAGATGAANTC TGTTGGCTGACAAACATTGCTCATGTCTGTACANTTGGGCNAGCTGGTGACCTGGANCCTGCCAATAGCCACGANGCAA AACTTGCTGCCCTGGCCAGCATCCGGGTCATCATCAGGCAGTGAAACACCTGCANGGGGCCAGGNCTTGATGTAACCCG TGNAGTGCACCACCANGTANTGAGGCTCTANATCCTTCNTTGCACCTAANNCGTTCCTGCANNGATTCCTCATGAAGCT NAAACNATTTACATACACTGCATCAACCGANCTGTTGCCACACTTCATGCGGCAGATGAAGGATCTCCGTGAGCCCATG CACATCCTCATGGACTGNTGCCCCTCCTTCTTCNNAGTTNCTGACTTCAAATCCAGGATGNNACNTTTANATGCATCTC GGNGGGGNANAANTGCTCCNT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Area Pellucida
Primitive Streak

7-12

stage 8

stage 10

Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Forebrain
Headfold
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Sinus Venosus
Somites

13-18

stage 13

stage 14

stage 17

Amnion
Anterior Intestinal Portal
Dermomyotome
Forebrain
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sclerotome
Somatic Mesoderm
Somites
Spinal Cord
Splanchnic Mesoderm
Widespread Expression

19-24

stage 20

stage 22

stage 24

Leg
Limb Buds
Pharyngeal Arches and Clefts
Widespread Expression
Wing

stage 25

Leg
Outflow Tract
Pharyngeal Arches and Clefts
Widespread Expression
Wing

Entry 3

GEISHA Id	HIF-1b.Nanka.2006	Data Source	Publication
Complete cDNA Template Probe	show CCCCCCCCACCTCCCGGCCCTCCCCCGGCGGACGGTGCTGCGCTTTTTTCAGCTCTTTCTCCGTCTCCTTCAGGAGCGC TTTCCTGGCCGGGCACAGCCGGCTGGGGGGGCCCGGGGGGGGCGGCGCGGCGGCTGAGCTGCAGCACGACGATGTCGGA CGCCTCGGGCNACGCGCACGGCCACGGCCGCTCCTCGCTCAGCCGCGCCAACTGCCCGCGCGTGCGTCCGCACCGCGTC CCACACCCGGCNCGGCACCGTCAGCCTCGTCTTCNCNCCCCCCCCCAGCGGCCGCCCCCCGCCCCGGCGGTGGTGAGGG AAGGGGGGGGGGGGGCGGCAGCGGGACGGGCCGCGCTATGGCAGCCACCGCCGCCAACCCGGAGATGGCATCAGATGTC TCCTCGCTGGGCGCAGCCGTCGGCTCAGGGAACCCCGGGGCTGGAGCTCAAACTGGAGGAGGCATCGTGCAGAGAGCAG CCAAGAGGCGTCCTGGGCTTGATTTTGATGATGATGGCGAAGGGAACAGTAAATTCCTCAGGTGTGATGACGACCCGAT GCCAAACGATAAGGAGCGATTTGCCAGGTCTGATGATGAGCAGAGTTCAGCGGATAAGGAGAGACTTGCCAGGGAGAAT CACAGCGAGATCGAGCGTAGGCGGAGGAACAAAATGACTGCCTACATCACCGAGCTGTCCGACATGGTGCCCACCTGCA GCGCCCTGGCACGCAAACCAGACAAGCTGACCATCTTACGCATGGCCGTGTCCCACATGAAGTCCCTGCGTGGCACAGG CAACACCTCCACGGATGGCACCTACAAACCCTCCTTCCTCACCGACCAGGAGCTCAAACACCTGATCCTGGAGGCAGCT GATGGCTTTCTGTTCATCGTGTCCTGTGAGACCGGCAGGGTGGTTTACGTCTCTGACTCCGTGACTCCCGTCCTCAACC AGCCCCAGTCGGAGTGGTTCGGCAGCACGCTGTACGACCAGGTGCACCCAGATGATGTGGGCAAGCTGAGGGAGCAGCT CTCCACGTCAGAGAATGCACTGACAGAAGGAACCAAACCCTGGTGCCTTTCTAACAAGGATCCTGCAGCCCCCCCTGAG AGTGCATCTAAAGGTCGCATCCTGGATTTGAAGACAGGAACTGTGAAGAAGGAGGGGCAGCAGTCCATGAGGATGTGCA TGGGCTCACGGAGATCCTTCATCTGCCGCATGAGGTGTGGCAACAGCTCGGTGGATGCAGTGTCTGTAAATCGTCTCAG CTTCATGAGGAATCGCTGCAGGAACGGCTTAGGTGCAACGAAGGATGGAGAGCCTCACTACGTGGTGGTGCACTGCACG GGTTACATCAAGGCCTGGCCCCCTGCAGGTGTTTCACTGCCTGATGATGACCCGGATGCTGGCCAGGGCAGCAAGTTTT GCCTCGTGGCTATTGGCAGGCTCCAGGTCACCAGCTCGCCCAACTGTACAGACATGAGCAATGTTTGTCAGCCAACAGA GTTCATCTCCCGGCACAACACGGAAGGCATTTTCACCTTCATAGACCACCGCTGTGTGGCTACTGTTGGCTACCAGCCA CAGGAACTTCTGGGGAAAGACATTGTGGATTTCTGCCACCCAGAGGACCAGCAGCTTTTGCGGGACAGCTTTCAGCAGG TGGTGAAGTTAAAAGGCCAGGTTCTGTCAGTCATGTTCCGATTCCGATCCAAAAACCGGGAATGGCTCTGGATGAGAAC CAGCTCCTTTACCTTCCAGAACCCCTACTCGGATGAAATTGAGTACATCATCTGTACCAACACCAACGTCAAGAACTCA AGCCAGGACTCTCGGCCTGCCCTATCAAACCCAATGCAGAGGCCCCAGCTGGGGCAGAGTGTCAGCCTTCCCCTGGAGA TGGGCACAGCACAGCTGCCCTCAAGGCAGCAGCAGCAGCCACAACAGACAGAGTTGGAAGTGGTCCCAGGAAGAGAGAG CCTGGCCGGGTACGACCACGCACAGGTTCCTGTGCAGCCCGTGAGTGCTGCTGGCCCGGAGCACAGCAAACCTCTGGAG AAGGCAGAGAGCCTCTTTAACCAGGAGAGGGACCCGAGGTTTGGGGAGATCTACGGCAGCATCAATGCAGACCAGAACA AAGCCATTCCTGCCAGCTCAGTGCCTGCCAACCCCACCCTCTTTCCACAGGGAAATGCTTTCACACCATCGCGGCCCGC TGAGAACTTCAGGAGCAGCAGCATGGTGCCTCCAGTGAACATCATCCAGCAGCAGCCGGCAGCAGCAGGCCGGATCCTG GCGCAGATCTCACGCCACGCCAGCCCGGCTCAGGTCAGCGGGAGCAGTTGGGCTGCCGGGACCCGACCGGCGTTCGCAG CCCAGGTGGCCTCCCAGGCAGTGAAGACTCGGCCTCCTTCGTTCAGCATGGGGACGTTCCAGGGCACCCCGGCCTCCTT CAGCCCCATGGCAGCTCCAGGCTCCACAGCTTCCCCCAGCAGTGCCGCGTACCCAAACCTCTCTGGCCGCAGTGCGGGC TTCACCACGGATGCAGCGCAGACCCCCACCCCGTTCCAACCCCGGGCAGCAGCTGAAGGAGTGGGGATGTGGCCGCAGT GGCAAGGACAGCACCACAGCACGGCGGCCGGGGAGCAGCACGTGCAGCAGCCCAGCCAGCCTGAGGCCTTCCCAGACAT GCTGACCATGCTGGGAGACCAAGGCCCCAACTACAACAACGAGGAGTTCCCCGAATTGAACATATTCCCTTCTTTTTCA GAGTAAAACCCGTCT
Citation	Nanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AF348088).

no images