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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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FOXO3
forkhead box O3

Gene

Official Symbol	FOXO3
Official Full Name	forkhead box O3
CGNC ID	11389
also known as	forkhead box protein O3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234495
Polypeptide	XP_001234496
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.23423

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2309	ENSG00000118689		MIM:602681
Mouse	56484	ENSMUSG00000048756	All phenotypic alleles (7):Chemically induced(1) Targeted, knock-out(3) Targeted, other(1) Gene trapped(2)	MGI:1890081
Xenopus	100125025, 444992			945071
Zebrafish	30296, 494532	ENSDARG00000042904, ENSDARG00000023058	ZDB-GENE-990708-6, ZDB-GENE-050116-1	ZFIN:ZDB-GENE-990708-6, ZFIN:ZDB-GENE-050116-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421769
Ensembl Gene
KEGG	gga:421769

Entry 1

GEISHA Id	ChEST558l10	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGTCGCCCATGCAGACTATTCAGGAGAACAAGCAGGCTACCTTCTCTTCCATTTCTCATTACAACAACCAGACGCTGCA GGATCTGCTCGCCTCGGATGCACTTAGTCACAGCGATGTCATGATGACACAGTCTGACCCGCTTATGTCCCAGGCCAGC ACAGCTGTGTCCGCCCAGAACTCCCGCAGGAATATAATGCTCCGCAATGACCCCATGATGTCGTTTGCTGCACAGTCCA GTCAGGGCGGCCTGGTCAATCAGAGCCTGCCCCATCACCAGCACCAGTCTCACAGCTCTCCTCTTAGCGGCAGCCGTGC CTTGTCCAATTCCATCAGTAACATAGGCTTGAATGACTCCAACAGCTTGGGATCCAAACATCAGCAGTCTCCTGTCAAT CAGTCTATGCAAACACTTTCTGACCCTCTCTCAGGCTCCTCTTTGTATTCCTCTAGCATGAACCTTCCGGTCATGGGAC ACGAGAAATTCCCAAGTGACTTAGACCTGGATATTTTCAATGGGAGCTTGGAGTGTGACATGGAGTCCATCATCCGCAG TGAACTCATGGATGCAGATGGGCTGGATTTTAACTTTGATTCCCTCATCTCAGCACAGAACGTTGTCAGTCTGAATGTG GGGAACTTCACTGGTGCTAAACAGGCTTCATCACAGAGTTGGGTACCAGGCTGAAGGATCTTTGAGGACAGGGAAAATG GGCAAACAGGCCCTCAAACTGACACGAGATGTAGAGAGAGAACCCTTTGCCAAATCTGCTGTCAGCAAGTGGACAGTGA TACTGTTTACAGCTTATGACGTTTGTGAACCCTGCATTATTTTCCTAACAAAGCAGACTGTTAAAAGGCCCCTTATCTG AGTGAAGATTCCTCCC

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

Paraxial Mesoderm

19-20

stage 20

Eye
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Widespread Expression

Entry 2

GEISHA Id	FOXO3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TCGTAAAGATGCACCTCTTG-3’
Reverse cDNA Template Primer	5’-ATTAACCCTCACTAAAGGCAAATCCTCAGGGTATGGTG-3’	cDNA Template Length	476
Complete cDNA Template Probe	show `TCGTAAAGATGCACCTCTTGGTTTCATCCCGCAGTTATGACTGTGTAAAGTCTGTGCAGTTGTGGTTGTTGTTGCCCTG TAGCATATCAACTTTTCCAAGCAGCCAAGGGTTTATCATTCTCGTTTCTAAAAAAAAAAAGGAGACTTTTATTTTCACA CTCAGTTGGTCTATTTGTCATCATGGGGACTAGGTGATTAAATCCACGGGAGGTAGCTGACACTCGCTGCCCATCTCCA TATTCAAGAAGGTTGGTTGTTAGCAGACGCGAGCATGCCACAGGTCACCAGGCCTAGGCATCACTTTGCTTATCAGTCC AACTGCAGATGCTTCTTAACAAAGTCAGTCAAGGGCTTCCCCACAAGCCTGCTGGCACACCCCAAAATGTGAGTGCACA CCTGTCCTCTGGTGCTCCTTCCCGAGGCAGCTCTGTGGTTGCTGCCCCAACCTGGGCTTGTCACCATACCCTGAGGATT TG`

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 18

Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Midbrain
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Somites
Ventricles
Wing Mesenchyme

19-24

stage 19

stage 20

Allantois
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Widespread Expression

25-26

stage 25

stage 26

Aorta
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Myotome
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Widespread Expression
Wing Mesenchyme

Entry 3

GEISHA Id	FOXO3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GTCGCCCATGCAGACTATTCAGGAGAACAAGCAGGCTACCTTCTCTTCCATTTCTCATTACAACAACCAGACGCTGCAG GATCTGCTCGCCTCGGATGCACTTAGTCACAGCGATGTCATGATGACACAGTCTGACCCGCTTATGTCCCAGGCCAGCA CAGCTGTGTCCGCCCAGAACTCCCGCAGGAATATAATGCTCCGCAATGACCCCATGATGTCGTTTGCTGCACAGTCCAG TCAGGGCGGCCTGGTCAATCAGAGCCTGCCCCATCACCAGCACCAGTCTCACAGCTCTCCTCTTAGCGGCAGCCGTGCC TTGTCCAATTCCATCAGTAACATAGGCTTGAATGACTCCAACAGCTTGGGATCCAAACATCAGCAGTCTCCTGTCAATC AGTCTATGCAAACACTTTCTGACCCTCTCTCAGGCTCCTCTTTGTATTCCTCTAGCATGAACCTTCCGGTCATGGGACA CGAGAAATTCCCAAGTGACTTAGACCTGGATATTTTCAATGGGAGCTTGGAGTGTGACATGGAGTCCATCATCCGCAGT GAACTCATGGATGCAGATGGGCTGGATTCTAACTTTGATTCCCTCATCTCAGCACAGAACGTTGTCCAGTCTGAATGTG GGGAACTTCACTGGTGCTAAACAGGCTTCATCACAGAGTGGGTACCAGGGCTGAAGGATCTTTGAGGACAGGGAACACA TGGGGCAAACCAGGCCCTCAAACTGACACGAGATGTAGAGAGAGAACCCTTTGCCAAAATCTGGCTGTCAGCCAAGTGG ACCGGGATACTGTTTTACACGCTTATGACCGTTGGTGAACCCTGCATTATTTCCCTAACAAAGCAGACTGTTAAACGGG CCCCTTATCTGAGTGAAGAATCCTCC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.