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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LIN28B
lin-28 homolog B

Gene

Official Symbol	LIN28B
Official Full Name	lin-28 homolog B
CGNC ID	11482
also known as	protein lin-28 homolog B\|Lin-28.2\|lin-28B
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001034818
Polypeptide	NP_001029990
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.14055

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	389421	ENSG00000187772		MIM:611044
Mouse	380669	ENSMUSG00000063804	All phenotypic alleles (1):Targeted, other(1)	MGI:3584032
Xenopus	100216028, 373796			1218968
Zebrafish

Gene Ontology

Molecular Function	DNA binding, RNA binding, zinc ion binding
Biological Process	miRNA catabolic process, pre-miRNA processing, regulation of transcription, DNA-templated, more...RNA 3'-end processing
Cellular Component	mitochondrion, nucleus

Links to other databases

Entrez Gene	421786
Ensembl Gene
KEGG	gga:421786

Entry 1

GEISHA Id	LIN28B.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AATGTGAGGATGGGCTTCGG
Reverse cDNA Template Primer	TGACAGTAATGGCACTTCTTTGGC	cDNA Template Length	353
Complete cDNA Template Probe	show `GGAAGGATTTAGAAGCCTAAAAGAAGGAGAACCAGTGGAATTTACTTACAAGAAATCTTCCAAAGGCCTTGAATCAATA CGGGTAACAGGCCCTGGTGGGAGCCCCTGTTTAGGAAGTGAAAGACGACCCAAAGGGAAGACAGTACAAAAAAGAAAAC CAAAGGGAGATAGATGCTACAACTGTGGTGGCCTTGATCACCACGCTAAAGAATGTAGTCTACCTCCACA`

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida
Epiblast

4-6

stage 4

stage 5

stage 6

Area Pellucida
Epiblast
Primitive Streak

Sections pending.

7-12

stage 10

stage 11

stage 12

Forebrain
Head Mesenchyme
Hindbrain
Lateral Plate Mesoderm
Midbrain
Paraxial Mesoderm

Entry 2

GEISHA Id	LIN28B.Bobbs.2012	Data Source	Publication
Complete cDNA Template Probe	show `GGAAGGATTTAGAAGCCTAAAAGAAGGAGAACCAGTGGAATTTACTTACAAGAAATCTTCCAAAGGCCTTGAATCAATA CGGGTAACAGGCCCTGGTGGGAGCCCCTGTTTAGGAAGTGAAAGACGACCCAAAGGGAAGACAGTACAAAAAAGAAAAC CAAAGGGAGATAGATGCTACAACTGTGGTGGCCTTGATCACCACGCTAAAGAATGTAGTCTACCTCCACA`
Citation	Bobbs AS, Saarela AV, Yatskievych TA, Antin PB. Fibroblast growth factor (FGF) signaling during gastrulation negatively modulates the abundance of microRNAs that regulate proteins required for cell migration and embryo patterning. J Biol Chem. 2012 Nov 9;287(46):38505-14.
Copyright	© 2012 by The American Society for Biochemistry and Molecular Biology, Inc.
Comments	The cDNA template for the probe was obtained from the author.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 4

Epiblast

control embryo

Entry 3

GEISHA Id	LIN28B.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAGAATCTCAATGGTTTGTACTGAAGTTCTCACTGTGCTAATGCAAAGCTTACCTTTGACGATATTGAATGTGATATAT CTATAGAGAACTTCCTGCCTTACGTGAGGATAGTAAACCTATTTAAATTATGTAGACAAATCAAAGTGGCATGCTTAAC CTTCTAGCCGGTGTAAAAACCCAGGTTAAACAGCAAAGATGCAAAACTTAGGTCACTTTGAACGTTTAAACCAAAGTTC CTTATAGAAATAGGCAATGTGGATTTGAGAACTGGTCATTCCCTGTTTATATGTAAGAAGTTCAGAGCTGAGATGAGGA AATATTTTCAATGTGCAGATTTTTATTGGTGCTGTTTGAAATCACTGTGTGCTCCAAAGTCAGACTGAACTGCAAAGAG CACATACCAAACCCTATCTTATGTTGAAAGCTTAAGGTTTTATTTTTATATATTAGAATGTTATCACTATTACATAACA TACTCAGGACAAAGAACTTGCTCAGGGAATATACCATGTAATGTNGTTTTTACTTTACAGAATAGTCTACCGACTTACT CAGAACAAACCAAATAGACTTAGCCCTTTTTATCTCTCTATAAGTATTATGTACTGATGTTAGTAACTACCTCTGAGTT GACATAGACCTACATTTCTGATAATCAGATTTCAGCATTTGTATTATAAGTTCCTGTGAAATGAAAAAGTGGCATTCTG TACTGGTTGCTTTATGTGAGCATATGTGTCTTTTACATTCACAGGGTCTGAGCTTTCAGAGGAAGCGGGCAGCACAGCT CCACTGACGTTGAGTTGTGGGGCTTAAGCTTTCTAGCTGAGGGGGG
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.