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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXA6
homeobox A6

Gene

Official Symbol	HOXA6
Official Full Name	homeobox A6
CGNC ID	51307
also known as	HOX1, HOX1.2, HOX1B, homeobox protein Hox-A6\|homeo box 1B\|homeo box A6\|homeobox protein HOXA6\|homeobox protein Hox-1B
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030987
Polypeptide	NP_001026158
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22376

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3203	ENSG00000106006		MIM:142951
Mouse	15403		All phenotypic alleles (2):Targeted, knock-out(2)	MGI:96178
Xenopus	100485428			481963
Zebrafish

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	420630
Ensembl Gene
KEGG	gga:420630

Entry 1

GEISHA Id	HOXA6.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCAGGACAAGACCTACACCTCACC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGCGGTAAGGCAGAGAGCGTTCG	cDNA Template Length	440
Forward cDNA Template Probe	show CACTGTGANGATTGACAATCACTTGCGTCGCCTCGGGTTAGTATCGGTTAAAAGGAACTCCCTCTCTAACTCTCTTTCT TGGGAGCGGGTGTAAATCTGCCTCCCTCGTGTTCCATGAGCTCCATATACTGGGACGATGCAGGAGTTTATCCCCGGCA TTCAGGGGTAAACAGGGCTCGTGTACTTCCGGACGGTGCCTTCATCATTCACGATTGTACTTTGCCGGCCCTAGTATTT GCATTGTTGCTCGGGAAAAGCCGCAGATAGTTCCCTTGTTGCCTCTTCTTGCCACTACGGGAGGGAGAGGTGCAACTAA TTTCCTTGTGTGATACGAGAAGAGGCGTCTTTTTCATAATTAACCCCCTAGCAAATACTGAGTGTGTTTTGCAACTCAT CCCCGGGGNGGGNGATCTGTTAGAATGGAACTCCTTCTCTAACTCTAGCGTTCTGTAACTGGTGTAAGTCTTCCTGGCT AGATGCCCATCAGCTTCTTATAACGTACCGGCTCAAGAGTTCATCCGGTGCATCCGTGCGTCAACTCGGCTGGGGTAAA TCAGGTCCATGCCTTCATATCTCCCCATTTCCTTTGGACTTAGATTTGATTCTATTGGATGCTACATCGTAAAGTAGCA AGAACCACCTTATCTACTCTGCCTGCTACTCCCAGATGCAGAGGAGGACCCGTTTCCATATCTTAATGGAAACTAGAGG GTACCTTACTGGTAGTAAACTTCACTTTTCAGCCTTAAAGTTTTTGAACTTTGTTCTTTAAACCGGACTCTTACCGTAG ACTTTTCCTCACCATTCCAAACTCTCTCCTTACGCTTTGTGAGGGTTTATTAAAA
Comments	No specific expression detected at or below stage 5.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 9

Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak

13-18

stage 13

stage 14

stage 16

stage 17

Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somatic Mesoderm
Somites
Spinal Cord
Tail

Staining observed in forebrain and hindbrain due to trapping.
Staining observed in the forebrain due to trapping.

19-24

stage 19

stage 20

stage 24

Anterior Neuropore
Ear/Otic Placode
Leg
Limb Buds
Neural Plate/Tube
Somatic Mesoderm
Somites
Spinal Cord
Tail
Wing

25-30

stage 25

stage 30

Leg
Somatic Mesoderm
Somites
Spinal Cord
Tail
Wing

Entry 2

GEISHA Id	HOXA6.Barak.2012	Data Source	Publication
Complete cDNA Template Probe	show GCCCTTATGAGTTCGTACTTTGTGAACCCCACTTTCCCCGGGAGCCTGCCCGCTGGCCAGGACTCCTTCCTCGGGCAGA TCCCCCTGTACCCGGCGGGCTATGATGCTCTGAGGCATTTTCCGACTTCGTACGGGGCGAGCAGCCTGCAGGACAAGAC CTACACCTCACCTTGTTTCTATCAACAGTCCAACACCGTCATTGCTTGCAATCGGGCTTCCTATGAGTACGGAGCCTCC TGTTTCTATTCAGACAAGGAAATTAGTAGCGCCTCTCCCTCCGGCAGTGGCAAGCAGAGGGGACAAGGGGACTATCTGC ACTTTTCTCCCGAGCAACAATACAAATCTAACGGCGTGCAAAGCAAAATCGTGAATGACGAAGGCACCGACCGGAAGTA CACGAGCCCTGTTTACCCCTGGATGCAGCGGATGAACTCCTGTGCCGGTACAGTATATGGAGCTCATGGGAGACGAGGG AGGCAGACTTACACCCGCTACCAAACGCTAGAGTTAGAGAAGGAGTTCCATTTTAACAGATACTTAACCCGAAGACGAC GCATTGAGATTGCGAACGCTCTCTGCCTTACCGAGCGCCAGATTAAAATATGGTTTCAAAACAGGCGGATGAAATGGAA AAAGGAAAACAAATTCATAAATTCCACCCAGCCCGGCAGCGACGAAACAGAGGAAAAGTCAGGGGAGTAGAACCGTGTT TAATAAACGCTACCAGGCCCGTCAAAAAAAAAAAAAAA
Citation	Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001030987.1).