GEISHA - A Chicken Embryo Gene Expression Database
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CDH8
cadherin 8

Gene
Official SymbolCDH8
Official Full Namecadherin 8
CGNC ID53126
also known ascadherin-8, cadherin-8|cadherin 8, type 2, Cadherin, CDH8
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001100289
PolypeptideNP_001093759
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.16831
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly35071FBgn0262018
Human1006ENSG00000150394MIM:603008
Mouse12564ENSMUSG00000036510All phenotypic alleles (4):Targeted, other(4) MGI:107434
Xenopus1004862281002703
Zebrafish564205ENSDARG00000037478ZDB-GENE-130530-597ZFIN:ZDB-GENE-130530-597
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene427553
Ensembl GeneENSGALG00000005319
KEGGgga:427553

Entry 1

GEISHA IdCDH8.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerGCGTTATTAGAGTGAGAAAGCCCC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCCACCTCCTTCATCATCATAGCGcDNA Template Length1015
Forward cDNA Template Probeshow
AATATTTTCTCTCACATCCTTCATCATCTTTGGATGGATTAAGGGGCTCATTCTTATGTCTTCTTAGTGTTACAAACAG
CACCACAATGACTAGTAGCAAAATGATGCATGCTAATATTGCAATTAGGGCTCCCATGCTGAGTCCAATAGGAAGTACA
TATGCTTCAACATTACAGGACTGGACAATACCGTCACTGCTGCAACCGCAGACTCTAATAGTAAGAGTGCTAGTACTGC
TCATGGGAGGATTTCCACTATCACTTATTATGATTGGCAGTAGGTATACTTCTTGTTTCTGCCGACTGAATCCATTATG
CTTTGCCAAAATGCTGAGAGTATTATCTTCATTTTTCTTGATAGTAAAATTTGGATTGTTGATCATTTCAGGAAGAAGA
CTATACAAGAAATAATGCCCATTTTTAGGATCATCTTTGTCAACAGCACTGACAATCTGAATTACTTGTCCAGGCTTCC
CATTCTCACATAAAAAGGCTTCATGCTCTGATGCAAACTCAGGAGCGTTGTCATTTACATCAAGAACTTTGATAGTAAC
AGGCACCCGGGACACTTGACTGTGGTTCCTAGTTTCAGTAGCTACAATCGTTATATTGTGCCACATATTTGTTTCTCTG
TCGAGTGGTGTTGCCAAAGTTATTTTTCCATCTTCTGCATTAATGTTGAACTGTCTCTCAAGGTCAGTATGACGATCAA
TGGAAAACCTTATAGGACTGGAAGACACATCAGGGTCATGGGCTGTCACCTGACCAATCACAGAGTTAATAGCAGCATT
TTCATGCACTTCCAGTAGGTATGTAGGTGATGAAAAGACTGGTGGCTCATCAGCATCCTCTACTACAATTTTTACTGTT
GCTGTATCCTTGAAAGGTCCTCCACTGATGAAGCGAGGATCAATATGAATGTTGGCTGCTTCTACCTTCANAGTATAGG
ATTTTTTGGTCTCAAGTCCAGGGGCTTTCTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 10
stage 11
Heart
Unlabeled
very faint
19-24
stage 20
Hindgut
Lung
Pharyngeal Arches and Clefts
 
25-26
stage 26
stage 26
stage 26
Foregut
Heart
Hindbrain
Hindgut
Leg Mesenchyme
Midbrain
Pharyngeal Arches and Clefts
Spinal Cord
Wing Mesenchyme
 

Entry 2

GEISHA IdCad8.Jiankai.2007Data SourcePublication
Complete cDNA Template Probeshow
AACAAACCTCTGGAGCCTCCTTCAGAATTCATTATAAAGGTTCAAGACATCAATGACAATGCCCCGGAGTTTGTTGATG
GTCCTTATCATGCCACAGTTCCAGAGATGTCTGTTGTTGGCACCTTTGTTACTAAAGTAACAGCTACAGATGCGGATGA
TCCAGTTTATGGAAACAGTGCCAAGCTGGTTTATAGCATTCTGGAAGGACAGCCTTACTTTTCCATTGAACCACATACA
GCTATAATTAAAACAGCTCTTCCCAACATGGACAGAGAAGCCAAAGAAGAATATTTTGTGGTTATCCAGGCAAAGGACA
TGGGAGGACATATGGGTGGACTTTCTGGAACTACAACGGTGACAATTACACTCACTGATGTTAATGACAATCCTCCTAA
GTTTGCGCAGAGTCTGTATCACTTCTCAGTAATGGAAGATGTTGCTCTTGGTGAACCTATAGGAAGGGTGAAAGCAAAT
GACCTGGATATTGGAGAAAACGCTAAATCATCATATGATATTATTGAAGGAGATGGAATGGATATATTTGAAATCACTA
CAGATGCCCAAACTCAGGATGGCGTTATTAGAGTGAGAAAGCCCCTGGACTTTGAGACCAAAAAATCCTATACTCTGAA
GGTAGAAGCAGCCAACATTCATATTGATCCTCGCTTCATCAGTGGAGGACCTTTCAAGGATACAGCAACAGTAAAAATT
GTAGTAGAGGATGCTGATGAGCCACCAGTCTTTTCATCACCTACATACCTACTGGAAGTGCATGAAAATGCTGCTATTA
ACTCTGTGATTGGTCAGGTGACAGCCCATGACCCTGATGTGTCTTCCAGTCCTATAAGGTTTTCCATTGATCGTCATAC
TGACCTTGAGAGACAGTTCAACATTAATGCAGAAGATGGAAAAATAACTTTGGCAACACCACTCGACAGAGAAACAAAT
ATGTGGCACAATATAACGATTGTAGCTACTGAAACTAGGAACCACAGTCAAGTGTCCCGGGTGCCTGTTACTATCAAAG
TTCTTGATGTAAATGACAACGCTCCTGAGTTTGCATCAGAGCATGAAGCCTTTTTATGTGAGAATGGGAAGCCTGGACA
AGTAATTCAGATTGTCAGTGCTGTTGACAAAGATGATCCTAAAAATGGGCATTATTTCTTGTATAGTCTTCTTCCTGAA
ATGATCAACAATCCAAATTTTACTATCAAGAAAAATGAGGATAATACTCTCAGCATTTTGGCAAAGCATAATGGATTCA
GTCGGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGAGCAGTACTAGCAC
TCTTACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATATGTACTTCCTATT
GGACTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTGCTGTTTGTAACAC
TAAGAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTCGCTATGATGATGA
AGGAGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAATGGATTTTTGCCT
CGTAAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGTGTTGATGTTGATG
AATTTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGA
CitationLuo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsAuthors said: RT-PCR fragments encoding chicken Cad8 ... were used as templates for the in vitro synthesis of cRNA probes. The accession number given in the paper is EF608154. Primers used to make the probe were 5-aacaaacctctggagcctc-3 5-cggaattctcrtanggnggngcngt-3. The probe listed was excerpted from the whole cDNA using these primer sequences.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-44
stage 37
stage 40
stage 44
Ear/Otic Placcode
 

Entry 3

GEISHA IdCDH8.Abellan.2009Data SourcePublication
Complete cDNA Template Probeshow
CATAATGGATTCAGTCGGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGA
GCAGTACTAGCACTCTTACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATA
TGTACTTCCTATTGGACTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTG
CTGTTTGTAACACTAAGAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTC
GCTATGATGATGAAGGAGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAA
TGGATTTTTGCCTCGTAAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGT
GTTGATGTTGATGAATTTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGACTCTATCC
AGATTTATGGCTATGAAGGAAGAGGCTCAGCTGCTGGTTCCCTTAGTTCATTGGAGTCCTCTGCATCAGACTCAGATCA
GAATTTTGACTACCTCAGTGAATGGGGTCCTCGCTTTAAAAGACTTGGAGAACTTTACTCAGTTG
CitationAbellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
CopyrightCopyright © 2009 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (acc # EF608154.1) - Showing 697 bp region from base 2197 to 2893 using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-42
stage 38
stage 38
stage 38
stage 38
stage 42
stage 42
stage 42
stage 42
stage 42
stage 42
Telencephalon
frontal section
oblique horizontal section
oblique horizontal section
oblique horizontal section

Entry 4

GEISHA IdCDH8.Neudert.2008Data SourcePublication
Complete cDNA Template Probeshow
ACAGTTACATTTGGCAGGCAGGCACGTTGGAGCGCTCAGACCCGGAATTAGTGGATTTATGTGGAATATCCCCGCTTTC
ACGGAGACGTGCTGCTGCCACTGGCTTGTGCAAAGGGAGAAATTAATAACTGCACTTGAGCATGCAGGCACAGAAACCC
GAGAAGCAAAATAACCGGCATCTCCTCCAGCATCAAAAAGCATGAGAAGAAAATCGGGAGAATCCTGCCTGTTCACAGG
GACTGGCGAATGGTTGTTTTACCTCACCCTTTCAATCCGCGTGTGAAGAGGCTGCCAGCAGGCTGTTTCCTTGGTCCTT
GAAAGAGAATCCTTAATGACTGGAAAACTCAATGGATCATGTTTTTATAATCTAAGCTATTTTACGTTGACTGTGCTGT
AAACACATGGAGGAGCTGTAAGTAAATGTTCTGTACTGCATGATGAATTGGATTGCTACAGTCTGGAGGAAAGCAAAAT
AATAATTTCATTTCTGTGGTGATTTGCGTAGCTTGTGGTACAATGCCAGAAAGACTAACGGAAATGCTTATGGATACAT
GGACTCCATTAATAATATTATGGATTACTGTACTTCCTTCCATTTATATGGCTCCAATGAATCAATCTCAAGTACTACC
AAGTGGATCCAGTACAGGACTAAAAAGGCTAACTGAAGAACAAAGAATTTTGAACCGTTCCAAGAGAGGCTGGGTTTGG
AATCAAATGTTTGTATTAGAAGAATTTTCTGGACCTGAACCAATACTAGTTGGCCGGTTACATACAGACTTGGATCCTG
GCAGCAGCAAAATCAAGTATATTCTGTCAGGAGATGGTGCTGGAACTATCTTTGTGATCAATGACAAGACTGGAGACAT
TCATGCAATGAAAAGGCTTGACCGCGAGGAAAAAGCTGAGTACACTCTAACAGCTCAAGCAGTTGACAGGGACACAAAC
AAACCTCTGGAGCCTCCTTCAGAATTCATTATAAAGGTTCAAGACATCAATGACAATGCCCCGGAGTTTGTTGATGGTC
CTTATCATGCCACAGTTCCAGAGATGTCTGTTGTTGGCACCTTTGTTACTAAAGTAACAGCTACAGATGCGGATGATCC
AGTTTATGGAAACAGTGCCAAGCTGGTTTATAGCATTCTGGAAGGACAGCCTTACTTTTCCATTGAACCACATACAGCT
ATAATTAAAACAGCTCTTCCCAACATGGACAGAGAAGCCAAAGAAGAATATTTTGTGGTTATCCAGGCAAAGGACATGG
GAGGACATATGGGTGGACTTTCTGGAACTACAACGGTGACAATTACACTCACTGATGTTAATGACAATCCTCCTAAGTT
TGCGCAGAGTCTGTATCACTTCTCAGTAATGGAAGATGTTGCTCTTGGTGAACCTATAGGAAGGGTGAAAGCAAATGAC
CTGGATATTGGAGAAAACGCTAAATCATCATATGATATTATTGAAGGAGATGGAATGGATATATTTGAAATCACTACAG
ATGCCCAAACTCAGGATGGCGTTATTAGAGTGAGAAAGCCCCTGGACTTTGAGACCAAAAAATCCTATACTCTGAAGGT
AGAAGCAGCCAACATTCATATTGATCCTCGCTTCATCAGTGGAGGACCTTTCAAGGATACAGCAACAGTAAAAATTGTA
GTAGAGGATGCTGATGAGCCACCAGTCTTTTCATCACCTACATACCTACTGGAAGTGCATGAAAATGCTGCTATTAACT
CTGTGATTGGTCAGGTGACAGCCCATGACCCTGATGTGTCTTCCAGTCCTATAAGGTTTTCCATTGATCGTCATACTGA
CCTTGAGAGACAGTTCAACATTAATGCAGAAGATGGAAAAATAACTTTGGCAACACCACTCGACAGAGAAACAAATATG
TGGCACAATATAACGATTGTAGCTACTGAAACTAGGAACCACAGTCAAGTGTCCCGGGTGCCTGTTACTATCAAAGTTC
TTGATGTAAATGACAACGCTCCTGAGTTTGCATCAGAGCATGAAGCCTTTTTATGTGAGAATGGGAAGCCTGGACAAGT
AATTCAGATTGTCAGTGCTGTTGACAAAGATGATCCTAAAAATGGGCATTATTTCTTGTATAGTCTTCTTCCTGAAATG
ATCAACAATCCAAATTTTACTATCAAGAAAAATGAGGATAATACTCTCAGCATTTTGGCAAAGCATAATGGATTCAGTC
GGCAGAAACAAGAAGTATACCTACTGCCAATCATAATAAGTGATAGTGGAAATCCTCCCATGAGCAGTACTAGCACTCT
TACTATTAGAGTCTGCGGTTGCAGCAGTGACGGTATTGTCCAGTCCTGTAATGTTGAAGCATATGTACTTCCTATTGGA
CTCAGCATGGGAGCCCTAATTGCAATATTAGCATGCATCATTTTGCTACTAGTCATTGTGGTGCTGTTTGTAACACTAA
GAAGACATAAGAATGAGCCCTTAATCATCAAAGATGATGAAGATGTGAGAGAAAACATTATTCGCTATGATGATGAAGG
AGGTGGAGAAGAAGATACAGAAGCTTTTGACATTGCAACGTTGCAAAATCCAGATGGAATTAATGGATTTTTGCCTCGT
AAGGATATTAAACCTGATCTTCAATTTATGCCCAGGCAGGGTCTTGCACCTGTTCCTAATGGTGTTGATGTTGATGAAT
TTATTAATGTAAGGCTTCATGAAGCCGATAACGATCCCACAGCTCCACCATATGACTCTATCCAGATTTATGGCTATGA
AGGAAGAGGCTCAGCTGCTGGTTCCCTTAGTTCATTGGAGTCCTCTGCATCAGACTCAGATCAGAATTTTGACTACCTC
AGTGAATGGGGTCCTCGCTTTAAAAGACTTGGAGAACTTTACTCAGTTGGAGAAAGTGACAAAGAAACTTGACAGTGGA
TTACAAACTTTTTCACTGTTGACTTAACGATCATGTATTATTCTAGGGCCACTGCTGTTAGTTAAAACTAATGTGGCTT
TTTGTTTTAGAGGCAAGTTTAGCGCCAGTCATCTATAAAATCAACTACATTGTAATGTTGAACCAAATAAAAAAGTATA
TGTTAGGAGGTTAAGTCTTGTGGAGTGTGAAGTAAAGTATGTGGAGTGTCTAGAAGTCTTTGGATATTTGATATTCACT
TGACCACTCTGAAGATGGAGATTTAGATCTTTAATTATCTTCAGTGAATTGAAAAGAATGAATTGGTGCTTTCTTAGGA
AATGGACTTGCAGGGATTTTGCTGTTGAACAGTAGCTCCTGCCAGTGTATGTAAAGCTAATGGTTTGTTTTTGCATTGC
CAACAAAGATCCCAACACAGAAATGTTAAAAGCAATATCTTGGTCTTCTTAGCAATGCTGAATAGAAATAGCATTGTAA
ATCCTTACTGGCTTTTACTGTGCAGTGACCATACATTGTACATACAGTAATTGTTGGCCACGTAACCACAGACTGAATA
TCATCTTTAAATATTGTGTCAAGCCTTAAAATATTCACATGTTCTTAATCCATTCCAGTTATGGGTAACAAATCCTACT
CATGTGCAAAGATTCGGATGCAGGGGTCCAAAACCTTGCTTTACAAAAAGATATTTTTTCTAAATGAAGGGTCAATCTG
GTACTTCTGAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA
CitationNeudert F, Redies C. Neural circuits revealed by axon tracing and mapping cadherin expression in the embryonic chicken cerebellum. J Comp Neurol. 2008 Jul 20;509(3):283-301. doi: 10.1002/cne.21743.
CopyrightCopyright © 1999–2013 John Wiley & Sons, Inc. All Rights Reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001100289.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 38
stage 38
stage 38
stage 38
stage 38
stage 38
Mesencephalon
Metencephalon
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.16831

Mouse

EmageMGI:107434
EurexpressMGI:107434
MGI GXDMGI:107434

Frog

Xenbase1002703

Fruit Fly

BDGPFBgn0262018

Zebra Finch

ZEBrACDH8

Zebrafish

ZFINZDB-GENE-130530-597
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