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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SOX5
SRY-box 5

Gene

Official Symbol	SOX5
Official Full Name	SRY-box 5
CGNC ID	9966
also known as	transcription factor SOX-5\|SRY (sex determining region Y)-box 5\|sex determining region Y-box 5\|transcription factor LSox5-I, SOX5, SRY (sex determining region Y)-box 5 , LSOX5
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001004385
Polypeptide	NP_001004385
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.37665

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	6660	ENSG00000134532		MIM:604975
Mouse	20678	ENSMUSG00000041540	All phenotypic alleles (5):Transposon induced(1) Targeted, knock-out(1) Targeted, other(3)	MGI:98367
Xenopus	100038209, 378594			487031
Zebrafish	567413	ENSDARG00000011582	ZDB-GENE-000607-13	ZFIN:ZDB-GENE-000607-13

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418195
Ensembl Gene
KEGG	gga:418195

Entry 1

GEISHA Id	ChEST909e22	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show `AGGATGAAGTGGCCCAGCCTCTGAACCTTTCAGCCAAACCCAAGACATCTGATGGCAAGTCTCCCACGTCACCCACCTC TCCTCATATGCCAACTCTGAGAATAAATAGTGGGACCAGTTCACTAAAATCCTCTGTGCCAGCAACATTAGCTAGTCCT TCGGCCAGAGCTAACACAATAG`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Area Pellucida
Primitive Streak

7-12

stage 9

Area Opaca
Head Mesenchyme
Neural Plate/Tube
Somites

13-18

stage 13

Widespread Expression

19-24

stage 21

stage 22

stage 23

stage 24

Amnion
Ear/Otic Placcode
Forebrain
Head Mesenchyme
Hindbrain
Leg Ectoderm
Leg Mesenchyme
Limb Buds
Nasal Placcode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Somatopleure
Somites
Spinal Ganglia and Nerves
Telencephalon
Wing
Wing Mesenchyme

hand transected
spinal nerves, hand transected

stage 25

Ear/Otic Placcode
Ectoderm
Head Mesenchyme
Leg Bones
Leg Mesenchyme
Midbrain
Nasal Placcode/Nerve
Somites
Spinal Ganglia and Nerves
Wing Bones
Wing Mesenchyme

Entry 2

GEISHA Id	L-Sox5.Chimal-Monroy.2003	Data Source	Publication
Forward cDNA Template Probe	show CATGGTGTGGGCTAAAGATGAACGGAGGAAGATCCTTCAAGCCTTCCCTGACATGCACAACTCCAATATCAGCAAGATA CTAGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAGCAGCCATACTACGAGGAACAGGCCCGACTCAGCAAACAGC ACCTGGAGAAGTACCCAGACTACAAATACAAGCCAAGGCCGAAGCGTACCTGCCTTGTAGATGGCAAAAAATTACGCAT TGGCGAATACAAGGCTATCATGCGCAACAGACGTCAGGAGATGAGGCAGTATTTTAATGTTGGGCAACAAGCACAGATT CCCATTGCCACCGCAGGTGTTGTTTACCCAGGAGCCATCGCCATGGCAGGAATGCCTTCCCCACATCTGCCCTCAGAGC ACTCAAGTGTGTCCAGCAGCCCCGAGCCCGGGATGCCCGTCATCCAGAGCACTTACGGCATCAAAGGCGAGGAGCCCCA TATCAAGGAAGAGATGCAGACCGATGACGTCAATGGAGAAATCTACGATGAATATGATGAGGAAGAGGATGACCCCGAT GTGGACTATGGCAGTGACAGTGAAAATCACATTGCGGGGCAAGCCAACTGA
Citation	Chimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301.
Copyright	Reprinted with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	Fragments of L-Sox5 (760 bp) chicken gene was obtained by RT-PCR using the following primers: 5′ primer, 5′-ATGAATGCCTTCATGGTGTGG-3′, and 3′ primer, 5′-GGTCTATTWGTCAGCTGATCC-3′ Forward primer was located in available sequence, reverse primer was not.