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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HIF1A
hypoxia inducible factor 1 subunit alpha

Gene

Official Symbol	HIF1A
Official Full Name	hypoxia inducible factor 1 subunit alpha
CGNC ID	8999
also known as	hypoxia-inducible factor 1-alpha\|HIF-1-alpha\|HIF1-alpha\|hypoxia inducible factor 1 alpha subunit\|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor), Hypoxia-inducible factor 1 alpha, HIF1 alpha
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204297
Polypeptide	NP_989628
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4933

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43580			FBgn0015542
Human	3091	ENSG00000100644		MIM:603348
Mouse	15251	ENSMUSG00000021109	All phenotypic alleles (12):Targeted, knock-out(7) Targeted, other(5)	MGI:106918
Xenopus	496583, 380141			946621
Zebrafish	393202, 797150	ENSDARG00000034293, ENSDARG00000006181	ZDB-GENE-040426-706, ZDB-GENE-080917-55	ZFIN:ZDB-GENE-040426-706, ZFIN:ZDB-GENE-080917-55

Gene Ontology

Molecular Function	DNA binding, histone acetyltransferase binding, protein dimerization activity, more...
Biological Process	positive regulation of transcription, DNA-templated, response to hypoxia, transcription, DNA-templated
Cellular Component	cytoplasm, nucleus

Links to other databases

Entrez Gene	374177
Ensembl Gene	ENSGALG00000011870
KEGG	gga:374177

Entry 1

GEISHA Id	ChEST818o24	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGGCTANCAAAGCTGTGCTAAATACTGCTGCAAGTTCACAAAACCTGGAAGCAGTCCTTGCAGCTGCTTTTATTTCTTT CCTTAGATTTTAGGACTCTCTAGCCTCATGCTAATCCTTCTTTGGAGGACAAGATTTATATATACATTCATTTCTACAG GTTAGCTTCATAATTTTGAATAAGTTTTTGTTTGTTTTTTGAAGTGTTGAGGCATTATCTTAGAGCACTTACTCTTTAC CAGTAGTAAAGAAGGAACTGCAGCTGGATGTGCTTTTACATATGGAACATACTAAATTACGAGTTTCACAAAATAAGAG GAACAGTGTTGCTTTCAGCAGCTCATCGGGACTGCAGCAGTAATCAAACCATGCATATCAGAGTGGTTGTCCAGCAGCT TAGGTGTAATACACTTAAAGTTGCCTGGAGCCCAGAGTGCACACTTCCTACTGCACCTTCTACCATGCAGTAAGGTGGG CTTGGACTGTATATCGATCTTAAAAAAAAACCTTTGGGTATAATAGAAACATTTTACTATTAACAATTTTCATTCCTGT TGTACGCACAAATTCCCTGACAGTAATTATGAATCACTTTAAAGAGACAGATGCCGGAATGAACAATTAAAACTCTACG TGCTTGCCAAGTTACCAAAAAGTTAAGAGTTTGCTACTGGATTTATACAGTATGGTAGATTTTGTGAATAACTGCAGTA TTCTCTCATGAAAAAGTGGTATATTTTGATGGAATTCTTTTCTGGAACCAAGTACAACCTATTGCAATTGTATTTCTCT TGAAACATTTTGACATACTTGTGATTGTACTTCTTTTTGATTGTGTAACGGTATAAAATTCAATAAAAGAGAGGGTTTG TCTCT

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Ear/Otic Placcode
Oral Pharynx
Surface Ectoderm

13-18

stage 13

stage 15

Intermediate Mesoderm
Oral Pharynx

stage 19

Oral Pharynx
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Widespread Expression

Entry 2

GEISHA Id	HIF-1a.Nanka.2006	Data Source	Publication
Complete cDNA Template Probe	show GGAGCCGCTCGGATCGAGCGAGCAGCAGCCAGGCCGCCGCCATGGACAGCCCTGGCGGCGTCACCGACAAGAAGAGGAT TAGTTCTGAACGCAGGAAAGAGAAGTCAAGAGATGCAGCCAGGTGCCGAAGAAGCAAGGAATCAGAAGTGTTCTATGAA CTTGCTCATCAGCTGCCCCTTCCGCACACTGTGAGTGCCCACCTTGACAAGGCATCCATTATGAGGCTGACCATCAGCT ACCTGCGCATGAGGAAGCTGCTGGATGCTGGTGAGCTAGAGACAGAAGCCAACATGGAGAAGGAGCTGAACTGTTTCTA CTTAAAAGCTCTTGATGGATTTGTTATGGTGCTTTCTGAGGATGGGGACATGATTTACATGTCTGAAAACGTGAACAAG TGTATGGGACTCACTCAGTTCGATTTGACGGGGCACAGTGTATTTGATTTCACTCATCCATGTGACCATGAAGAGCTGA GAGAAATGCTTACACACAGAAATGGTCCTGTGAAAAAGGGCAAAGAGCAAAACACGGAGCGCAGCTTCTTTCTCAGAAT GAAGTGTACGCTGACCAGCAGGGGAAGAACAGTGAATATAAAGTCTGCTACATGGAAGGTACTGCACTGCACTGGACAT ATACGTGTATATGACACATGCAATAATCAAACTCACTGTGGCTACAAGAAGCCTCCCATGACGTGCTTGGTGTTGATAT GTGAACCAATTCCTCACCCATCAAACATTGAGGTCCCCTTGGACAGTAAAACGTTCCTCAGTCGTCACAGTCTCGATAT GAAATTTTCCTACTGTGATGAAAGAATTACAGAGTTGATGGGATATGAACCAGAGGAACTCCTGGGTCGTTCAATCTAT GAGTACTATCATGCGCTGGATTCTGATCATCTGACCAAAACACACCATGATATGTTCACGAAAGGGCAGGTGACTACGG GACAATACAGAATGCTTGCTAAACAAGGTGGCTACGTCTGGGTTGAGACTCAAGCAACTGTTATATACAACACTAAGAA TTCTCAACCACAGTGCATAGTATGTGTAAACTATGTGTTGAGTGGAATTGTTCAGAAGGACTTGATATTTTCCCTTGGA CAAACTGAGTGTATGCTGAAACCAGTGGAGTCTCCTGAAATGAAAATGACCAAAATATTCAGCAAAGATGACTGGGATG ATACCAACAGCCTTTTTGAAAAACTTAAGCAGGAACCAGATGCTTTAACTGTGCTGGCTCCAGCTGCTGGAGACACAAT CATCTCCCTAGATTTCAGCAGCAATGAGTCTGATGAACAACAATGTGATGAAGTCCCTTTGTATAACGATGTAATGCTC CCCTCATCCAGTGAGAAATTGCAGAATATAAATATAGCAATGTCCCCTCTACCTGCCTCTGAAACTACAAAGCCACTTC GTAGCAATGCCGATCCTGCACTCAATAGAGAAGTTGTATCAAAGCTGGAGCCAAACACAGAGACACTTGAACTTTCTTT TACCATGCCTCAGGTACAAGAGCAACCAACCAGCCCTTCTGATGCAAGTACCAGCCAAAGTTCACCTGAGCCCAGTAGT CCCAATGACTATTGCTTTGATGTGGATAATGACATGGCTAATGAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAA TAGATACAGAAGCAAAAAATCCATTCTCCACTCAGGAGACTGATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAAT GGATGATGATTTCCAGCTACGCTCCTTTGATCAACTATCTCCACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCC ACCATTACCATACTTCAGCAGACTCAGACACCATCAACTGCTGCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATG ATGTGAAGGCACTAATTGTTCCATCATCTCCTGTCCACGTAATAAATGACACGAGTAGTGCCCCTGCATCACCTTACAG TGGAAACAGGAGTCGAACTGCATCTCCAATCAGAGCAGGAAAAGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGA GCACCCAGTTTGATAACAGTCACGCTGAACAAAAGATCTACTGCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTT TGCATAATGCTCAGAGAAAACGAAAAATGGAACATGATGGTTCACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCA GCAGACAGGTGACCGTGGAGGAAACGCATCGCTTGCTTGGAAACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGA GTGGAGCAAAAGACAATCATTCTACTATCAACTGACATAGCGAGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGAC TACCCCAACTCACGAGTTACGATTGTGAAGTAAATGCTCCCATACAAGGCAACAGAAACCTGCTACAGGGTGAAGAACT GCTCAGAGCTCTGGATCAAGTTAACTGAGCTTTCACAGTAGTTGTTCCTTTTTTGGACACTGGTGAATCATCACCTAAA GCAGTCTATTTATATTTTCTATATCTGATTTTAGAAGCCTGGCTACAGTACTGCACTAATTCAGTTAGTTCAGTTTTGA TCCCCTTTCTACTTATTTTGTCAGTCTTTTTAATACATTCTTTATGTAACAGTAACTCAAACCGTAGTGCATTTTTATA ATTCTTTGGTACATACACTTTAAAGTCCATTACATTTAGAACACACTTGCAATAGCAGCTTAGAAATATGCACCTGATT TAAAAAGTATATATATTTATTTTTTGGCTGGGGAGTTGGTCACCAAAATCTATCATTAGTAAAATGTCAGCACGTGAAA AACTGGCAGTACTTCCATCCTGCTCTTCATAGGTAGCTGGAAGACTTGTGCTCTCTTACTCTTTATGTTCAAGTAAGTT TTTTTATTTTAATATTTTTTATAAGAAACAGCAATGCTTTGCAGCAGTGCATTGTAGCCACAATCGCACAATATATTTT CTTAAAAAATACCAGCAGTTCCTCATGCAATATATCTGCATTTATAAAAACTAGTTTTTAAGAAGAATCTTTTGTTTGC CTATGATATCATGTTTAAACCTGGATTATGTCATTATTTTAGTCACGTTGTAATATAAATTGTTCTTAAATGCTGTCTT ACACTTTTGACTTAAGAGTGTGATTAGTCGAAGGGAAAGGATTGATCTGGGAAGGGCTAGCAGCATTTTATTTGGGTAC ATTCTCAATTTAGAGAGAGAGTTGATGTTCTTAAAGTAGTCACTTTGCCAGCTTAAAAGAAATCCCTGCCTGTAGTTGT TGAAGTTAATGCTAATATTGTGTATGATCTTAAATCTAAATGTTCAGCTTACCCTGTGTGGTATAGGTGATATTTCAAG CAGACTGTAAACCATCTTGCATTGTTAGCAGTTTTATCTAGTACATCACTGAGTTGCTCAATATTTTAATGTTTTGGTT TTAAGCACCTTGTTGCTATTAACATCCGTATACTTTCGTGTAGATTTCAATAACTTGAATATATTTAGAAGCCTTTTTA TTTAGAAATATATAGTTGTCACAAACATCTTATTTTCCTATATGTACTGTACAAACCTTCATTCACTCGTTCTTTTGCT CTTTGTGGTTGGATCTAACACTAACTGTATTGTTTTCTTACATCAATAAACTATATGTGGACCAGGCCCCCTCGGGGAG TGTGTTATCTGAGAAAAGTGAGATAATTTATATTTTTGTTAGTGGTTATTGTTCATCCGTGTTCCCTTTTTAACTTAGA CTTGATTGGAAACCCCAGCTTCCTTATTTTGATCATACCATCTCCGACGTAATTATTTGAGCCTATTCAGTACTAAATT CTCCTACAGTGTTGTACTACCGCCGGCCAAAGATGTTAAACTTTTTAATCTGTTATCACACCAGTTAGCAAACTTGAAA GGGAGAAGACAGCAAATCTGTGTTACTTCAAAGCAAAAAGACTTTTTCCTTAAGAACAGCTCAGAGGCTCATCTCTGGA AGCATTATCAAGGTAACACTGGAAAGCAGGAAAAAGTAAAATTCACATGAGGGATCAATTAAAGACGAACTTGTTAAAA TTGCAGTGAGAAATGAAGCTGGTACTCTGATAAAGAAAGGTTGTTCTACATTGTCATGCTGTTGACTCGGTAACTTTGC TGTCCTAAAACACAAAACTACTGATACAACCTTGTAATGTGTAAATAGGGTCAAGATATCCGGTGCATTCGTCACAAAC TATTGTAGGAAACTTATTTCACTGTAAGAAATGAAGTGTGGATGTCACAATTTCTTTTGGAATCTTTCTTTTCATTGAC CTCCTTTAGAGTACTTTACAATCACTGTAATGCTGTATAAGCTTACCGTGCTTTTTAAAAATACTGTTACAGTTTTACT GAAGCAAGAGCACTTTCCAAACTGACACAAGTGTGCTAATGAAACTAAATGGAACCAACGTTAAAAGACAAGGCACTGG CAGCAGAAAATATGGTTGCATGTTTGAGTAGGAGTTGCATAGAGAGAGAAAAGCACTAAGCATGGACTTCAGGATTTGT GCACAAGAAACATCTTGAATATACACACCTAATAAATACTAAGGGTTGTAATGAAACCCTTATATGTGGATGGTGTGCT TCCCATGGCAGCGCTTTCTCCAGCAGCAGTAGAAGTTGTGATAGTGAAGCTGGTAAAGGCTTAAGAAAGGCACCAGCAG ACTTGGGTTTAAATGAGCACTATTTCACCTAGGAATCTTCCCCATTCGTTACACATTTTCTGTCATACATATTAATGAG GCACAGCATGTTGTTTACTATGCTTGTAGAAGTGAATGAAATAAGACTGAACTGCAGTACATGTAGCTGTTTGCACTCT GGGCAACTGGAAAAAAAAAAGGCCTCAGCCTGAAAACCTAACTTTTAAAATTAAACATAAGATTTCAAGTGTTCCCTCC TTCTCCCCCTCACTGACCCCTAATTATTGTGACAGTAATTATCAGGACCTGCCCACTGTATTCTGGAAGTTGTAGCTTC CCTATGACTAAGACTGATGTGCTGTAGTTACTGGGAACAGTTCTTCAGCTCTCAGAGATGCTGAAGAAAGCATGGAAAA TTAACAGTAACTGCTCTGGGCTACTCAAAGCTGTGCTAAATACTGCTGCAAGTTCACAAAACCTGGAAGCAGTCCTTGT AGCTGCTTTTATTTCTTTCCTTAGATTTTAGGACTCTCTAGCCTCATGCTAATCCTTCTTTGGAGGACAAGATTTATAT ATACATTCATTTCTACAGGTTAGCTTCATAATTTTGAATAAGTTTTTGTTTGTTTTTTGAAGTGTTGAGGCATTATCTT AGAGCACTTACTCTTTACCAGTAGTAAAGAAGGAACTGCAGCTGGATGTGCTTTTACATATGAAACATACTAAATTACG AGTTTCACAAAATAAGAGGAACAGTGTTGCTTTCAGCAGCTCATCGGGACTGCAGCAGTAATCAAACCATGCATATCAG AGTGGTTGTCCAGCAGCTTAGGTGTAATACACTTAAAGTTGCCTGGAGCCCAGAGTGCACACTTCCTACTGCACCTTCT ACCATGCAGTAAGGTGGGCTTGGACTGTATATCGATCTTAAAAAAAAACCTTTGGGTATAATAGAAACATTTTACTATT AACAGTTTCCATTCCTGTTGTACGCACAAATTCCCTGACAGTAATTATGAATCACTTTAAAGAGACAGATGCCAGAATG AACAATTAAAACTCTACGTGCTTGCAATGAAGTAAAGGTATAGGGATCAAAAATTAGTACAGGTTTAATAGCTGCATAT TTAGAAGTAACTTTCATTATTTCAACAGCTTCTTAAACAGCTAAACAAGGGCAGCTGAAGGCAGGCTTTGTAGTTAAAC TGCTCAATGAATCATTTCCTTCCTTGAATCCAAGAGGCAGGAGCACCCTCCCACTGTGAGGCAGGCACTAGAGGATAGG CCTGAGGTCAATCATCTGTTCTCCATCCCCTCTGATTAGCTGCTACTGAACTGCGCACACAATTCACCCAAATGTCACT GCACTTATGGATATTGTTCAGATTGCAATTATCCAGCACAAAAATAAACATTTCACAGGCCAGGAATGCTCTGTAGGAA GGCCAGTATTGTCATAGGAACTCATGAGCTGAATACCCAGCTCTCATTAGTAATCATACGCTCAACTCCCTGGAAAGCT CCAATCTTGAGGACTGTGATTTTGATCCACGTTCTAAAACTGAGGTGTCATTTCCTTTCTGCTTCCCTGCTTACCTTGA GCAAAGCTTGCCAAGTTACCAAAAAGTTAAGAGTTTGCTACTGGATTTATACAGTATGGTAGATTTTGTGAATAACTGC AGTATTCTCTCATGAAAAAGTGGTATATTTTGATGGAATCCTTTTCTTGGAACCAAGTACAACCTATTGCAATTGTATT TCTCTTGAAACATTTTGACATACTTGTGATTGTACTTCTTTTTGATTGTGTAACGGTATAAAATTCAATAAAAGAGAGG GTTTGTTTTT
Citation	Nanka O, Valásek P, Dvoráková M, Grim M. Experimental hypoxia and embryonic angiogenesis. Dev Dyn. 2006 Mar;235(3):723-33.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AB013746).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Forebrain
Hindbrain
Limb Buds
Midbrain
Pharyngeal Arches and Clefts

25-28

stage 28

Entry 3

GEISHA Id	Hif1alpha.Ota.2007	Data Source	Publication
Complete cDNA Template Probe	show GGCTAATGAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAATAGATACAGAAGCAAAAAATCCATTCTCCACTCAG GAGACTGATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAATGGATGATGATTTCCAGCTACGCTCCTTTGATCAAC TATCTCCACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCCACCATTACCATACTTCAGCAGACTCAGACACCATC AACTGCTGCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATGATGTGAAGGCACTAATTGTTCCATCATCTCCTGTC CACGTAATAAATGACACGAGTAGTGCCCCTGCATCACCTTACAGTGGAAACAGGAGTCGAACTGCATCTCCAATCAGAG CAGGAAAAGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGAGCACCCAGTTTGATAACAGTCACGCTGAACAAAAG ATCTACTGCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTTTGCATAATGCTCAGAGAAAACGAAAAATGGAACAT GATGGTTCACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCAGCAGACAGGTGACCGTGGAGGAAACGCATCGCTTG CTTGGAAACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGAGTGGAGCAAAAGACAATCATTCTACTATCAACTGA CATAGCGAGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGACTACCCCAACTCACGAGTTA
Citation	Ota K, Nagai H, Sheng G. Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick. Gene Expr Patterns. 2007 Aug;7(7):761-6. Epub 2007 Jun 12.
Copyright	"Reprinted from Gene Expression Patterns, Volume number 7, Ota K, Nagai H, Sheng G, Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick,761-766. Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
Comments	Hif in situ probes were generated against nucleotides 16162389 of full length Hif1 alpha sequence (NCBI Accession # AB013746)

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Area Pellucida
Early Endoderm
Epiblast
Neural Plate/Tube
Surface Ectoderm
Widespread Expression

7-12

stage 7

stage 8

stage 9

stage 10

stage 12

Early Endoderm
Ectoderm
Epiblast
Gut
Intermediate Mesoderm
Neural Plate/Tube
Somites
Surface Ectoderm
Widespread Expression

check anatomies: endothelial tissues

13-14

stage 14

Intermediate Mesoderm
Notochord
Widespread Expression

Entry 4

GEISHA Id	HIF1α.Etchevers.2003	Data Source	Publication
Complete cDNA Template Probe	show GAATTCAAACTGGAATTAGTGGAGAAGCTCTTTGCAATAGATACAGAAGCAAAAAATCCATTCTCCACTCAGGAGACTG ATTTAGACTTGGAAATGTTGGCTCCTTACATCCCAATGGATGATGATTTCCAGCTACGCTCCTTTGATCAACTATCTCC ACTGGAAAGCAGTTCTTCTGGCTCTCAAAATGCAGCCACCATTACCATACTTCAGCAGACTCAGACACCATCAACTGCT GCTGATGAAATAAAACCAGTGGCAGAACGTGTGGATGATGTGAAGGCACTAATTGTTCCATCATCTCCTGTCCACGTAA TAAATGACACGAGTAGTGCCCCTGCATCACCTTACAGTGGAAACAGGAGTCGAACTGCATCTCCAATCAGAGCAGGAAA AGGAACATTGGAACAGACAGAAAAATCTTGTCCAGGAGCACCCAGTTTGATAACAGTCACGCTGAACAAAAGATCTACT GCAATGGATGAAGAACTAAATCCAAAGATGCTAGCTTTGCATAATGCTCAGAGAAAACGAAAAATGGAACATGATGGTT CACTTTTTCAGGCAGTTGGAATTGGGTCTTTATTCCAGCAGACAGGTGACCGTGGAGGAAACGCATCGCTTGCTTGGAA ACGTGTAAAGGCGTGCAAAACAAACGGTCACAATGGAGTGGAGCAAAAGACAATCATTCTACTATCAACTGACATAGCG AGTAAACTTCTAGGGCAGTCGATGGATGAAAGTGGACTACCCCAACTCACGA
Citation	Etchevers HC. Early expression of hypoxia-inducible factor 1alpha in the chicken embryo. Gene Expr Patterns. 2003 Mar;3(1):49-52.
Copyright	Reprinted from Gene Expr Patterns, Volume 3, Issue 1, Heather C. Etchevers, Early expression of hypoxia-inducible factor 1α in the chick embryo, Pages 49-52, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
Comments	Author said: Plasmid pCHIF-1α-F2 was kindly provided by Dr Toshiyuki Takahashi (Takahashi et al., 2001) and corresponds to nucleotides 16232384 of chicken HIF1α (GenBank Accession number: AB013746).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

stage 11

stage 12

Diencephalon
Head Mesenchyme
Hindbrain
Midbrain
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx

ectoderm of 1st branchial arch
rostral pharyngeal endoderm

13-18

stage 14

stage 17

stage 18

Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
Retina

dorsal and rostral cephalic ectoderm, ventral BA2
hypothalamus

19-24

stage 19

stage 20

Neural Plate/Tube
Pharyngeal Arches and Clefts
Renal
Wing Mesenchyme

BA2 mesenchymal expression
mesonephros

25-30

stage 30

Midbrain
Retina
Telencephalon

proliferative neuronal layers

Entry 5

GEISHA Id	HIF1a.Singh.2016	Data Source	Publication
Complete cDNA Template Probe	show GGGACTGCAGCAGTAATCAAACCATGCATATCAGAGTGGTTGTCCAGCAGCTTAGGTGTAATACACTTAAAGTTGCCTG GAGCCCAGAGTGCACACTTCCTACTGCACCTTCTACCATGCAGTAAGGTGGGCTTGGACTGTATATCGATCTTAAAAAA AAACCTTTGGGTATAATAGAAACATTTTACTATTAACAGTTTCCATTCCTGTTGTACGCACAAATTCCCTGACAGTAAT TATGAATCACTTTAAAGAGACAGATGCCAGAATGAACAATTAAAACTCTACGTGCTTGCAATGAAGTAAAGGTATAGGG ATCAAAAATTAGTACAGGTTTAATAGCTGCATATTTAGAAGTAACTTTCATTATTTCAACAGCTTCTTAAACAGCTAAA CAAGGGCAGCTGAAGGCAGGCTTTGTAGTTAAACTGCTCAATGAATCATTTCCTTCCTTGAATCCAAGAGGCAGGAGCA CCCTCCCACTGTGAGGCAGGCACTAGAGGATAGGCCTGAGGTCAATCATCTGTTCTCCATCCCCTCTGATTAGCTGCTA CTGAACTGCGCACACAATTCACCCAAATGTCACTGCACTTATGGATATTGTTCAGATTGCAATTATCCAGCACAAAAAT AAACATTTCACAGGCCAGGAATGCTCTGTAGGAAGGCCAGTATTGTCATAGGAACTCATGAGCTGAATACCCAGCTCTC ATTAGTAATCATACGCTCAAATCCCTGG
Citation	Singh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
Copyright	Copyright © 2015 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST648m13.