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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HIPK2
homeodomain interacting protein kinase 2

Gene

Official Symbol	HIPK2
Official Full Name	homeodomain interacting protein kinase 2
CGNC ID	49057
also known as	homeodomain-interacting protein kinase 2, Homeodomain-interacting protein kinase 2 , HIPK2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_416335
Polypeptide	XP_416335

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	38070			FBgn0035142
Human	28996	ENSG00000064393		MIM:606868
Mouse	15258	ENSMUSG00000061436	All phenotypic alleles (7):Targeted, knock-out(1) Targeted, other(6)	MGI:1314872
Xenopus	780207, 495265			958493
Zebrafish	557551	ENSDARG00000042518	ZDB-GENE-031125-4	ZFIN:ZDB-GENE-031125-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374138
Ensembl Gene	ENSGALG00000012792
KEGG	gga:374138

Entry 1

GEISHA Id	ChEST612c17	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCATGTGCAAGTTCTCTCTCCTCACACCCTTCAGTCAAGTGCCTTCTGTAGCGTGAAGAAACTGAAAGTAGAGCCGAG TTCGAACTGGGATATGACTGGGTACGGCACACACAGCAAAGTCTACAGCCAGAGCAAGAGCGTACAGTCCTCCCAAGCA GCCGCCGCAGCCGCCGTCAACGCCTCCCTCCAGATCCCCAATCCGAGCATCCCTTACGAACAGACCATCATCTTCCCAG CAAGCACGGGGCACATCGTGGTGACGTCCGCCAACAGCACTTCTGGTGTGGTGGCAGTGTCTGGGCAAACACTGGGCGG ACCACACAACCTGATGCGTCGCAGCACTGTGAGCCTTCTGGACACCTACCAAAAATGTGGACTTAAGCGAAAGAGTGAG GAGATTGAGAACACGAGCAGCGTGCAGATCATCGAAGAGCATCCACCAATGATTCAGAACAATGCCAGTGGGGCCACTG TAGCCACCGCCACCACCTCCACGGCCACCTCCAAAAACAGTGGCTCCAACAGCGAAGGGGATTACCAGCTGGTGCAACA TGAGGTGCTCTGTTCCATGACCAACACGTACGAAGTGTTAGAATTTCTTGGCCGGGGAACCTTCGGACAAGTAGTCAAA TGCTGGAAACGTGGCACTAATGAGATTGTGGCCATCAAGATCCTAAAGAACCATCCTTCCTATGCCCGGCAAGGCCAGA TTGAAGTGAGCATCCTGGCACGGCTGAGCACAGAAAGTGCGGATGACTACAACTTTGTCCGTGCGTATGAGTGCTTCCA GCACAAGAATCACACGTGCTTGGTCTTTGAAATGTTAGAGCAGAACCTCTATGATTTTCCTAAACAAAACAAATTCAGT CCCTTGCCCCTTAGGTACATTCGACCAATTCTCCAGCAAGTAGCAACTGCACTAATGAAGTTGAAAAGCTTGGGACTGA TTCAGGCTGATCTTAAACAGAAAACATCTGTTTGGTAGATCCATCCGAACGCCGTATAGGGTCAAGGTCATAACTTCCG ATCACCTAGCATGTGTCCTAAGCTGGGTGTTCACCTTACTTCAATCAGAAATTTCAGAGCCCCTGAAACTCTCTCGGTT ACCTTTTGGGAA

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Blood Vessels
Heart Tube
Somites

13-18

stage 16

Blood Vessels
Face Mesenchyme
Heart Tube
Hindbrain
Pharyngeal Arches and Clefts
Somites

19-22

stage 22

Allantois
Amnion
Blood Vessels
Diencephalon
Face Mesenchyme
Hindbrain
Limb Buds
Midbrain
Pharyngeal Arches and Clefts
Pineal Gland
Somatopleure
Somites

Entry 2

GEISHA Id	HIPK2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-CCCTTCCAGCAAGCTCTCAT-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGTCATGCACAGTGACACAGCT-3’	cDNA Template Length	821
Complete cDNA Template Probe	show CCCTTCCAGCAAGCTCTCATCGTCTGCCCACCAGGCTTCCAAGGGTTACAAGCTTCCCCTTCGAAGCACGCTGGGTATT CCGTTCGGATGGAGAATGCTGTTCCCATTGTCACTCAGGCTCCTGGGGCTCAGCCTCTTCAGATCCAGCCAGGACTCCT CGCACAGCAAGCATGGCCCAGCGGCACACAGCAGATCCTGCTCCCTCCTGCCTGGCAGCAGCTGACTGGGGTGGCCACC CACACTTCTGTCCAGCACGCGACCGTCATCCCTGAGTCCATGGCAGGCACCCAGCCACTGGCAGACTGGAGAAACACCC ACGCTCATGGCAGCCACTATAATCCCATCATGCAGCAGCCCGCGCTGTTAGCTAGCCATGTGACTCTCCCCGCAGCCCA GCCCGTCAATGTGGGTGTTGCTCACGTCATGCGCCAGCCGCCCGCCGCCGCCACCTCCACCAGGAAGAGTAAGCAGCAC CAGTCGGCGCCTCGAAATGCATCCACCTACGAAGTTTCGTCCTCTCAGTCCATCAGCTCGCCTCAGCGGTCGAAACGAG TGAAGGAAAACACGCCTCCTCGCTGTGCCATGGTGCACAACAGCCCTGCCTGCAGCACTGCCGTCACCTGCGGCTGGGG TGACATGGCCACCAGCACCACGCGGGAGCGGCAGCGGCAGCCCATAATCATTCCCGACACCCCCAGCCCCGCTGTGAGC GTCATCACTATCAGCAGCGACACCGATGAAGAGGAGGAGCAGAAGCATGCACCCACCAGCACCTTGTCCAAGCAAAGGA AGAACGTCATCAGCTGTGTCACTGTGCATGA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Unlabeled

7-12

stage 8

stage 10

stage 12

Dermomyotome
Extraembryonic
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Outflow Tract
Pharynx
Sinus Venosus
Somites
Unlabeled
Ventricles
extraembryonic mesoderm

13-18

stage 18

Foregut
Neural Plate/Tube
Notochord
Sclerotome
Sinus Venosus
Somatic Mesoderm
Widespread Expression

19-24

stage 21

stage 23

Forebrain
Foregut
Liver
Lung
Mesonephros
Nephric Tubules
Neural Plate/Tube
Sclerotome
Spinal Ganglia and Nerves
Widespread Expression

stage 25

Liver
Mesonephros
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

Entry 3

GEISHA Id	HIPK2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TCCAGATCCCCAATCCGAGCATCCCTTACGAACAGACCATCATCTTCCCAGCAAGCACGGGGCACATCGTGGTGACGTC CGCCAACAGCACTTCTGGTGTGGTGGCAGTGTCTGGGCAAACACTGGGCGGACCACACAACCTGATGCGTCGCAGCACT GTGAGCCTTCTGGACACCTACCAAAAATGTGGACTTAAGCGAAAGAGTGAGGAGATTGAGAACACGAGCAGCGTGCAGA TCATCGAAGAGCATCCACCAATGATTCAGAACAATGCCAGTGGGGCCACTGTAGCCACCGCCACCACCTCCACGGCCAC CTCCAAAAACAGTGGCTCCAACAGCGAAGGGGATTACCAGCTGGTGCAACATGAGGTGCTCTGTTCCATGACCAACACG TACGAAGTGTTAGAATTTCTTGGCCGGGGAACCTTCGGACAAGTAGTCAAATGCTGGAAACGTGGCACTAATGAGATTG TGGCCATCAAGATCCTAAAGAACCATCCTTCCTATGCCCGGCAAGGCCAGATTGAAGTGAGCATCCTGGCACGGCTGAG CACAGAAAGTGCGGATGACTACAACTTTGTCCGTGCGTATGAGTGCTTCCAGCACAAGAATCACACGTGCTTGGTCTTT GAAACTGTTAGAGCAGAACCTCTATGATTTCCTAAAACAAAACAAATTCAGTCCCTTGGCCCTTAAGTACATTCGACCA ATTCTCCAGCAGGTAGCAACTGCACTAATGAAGTTTGAAAAGCTTGGGACTGATTCATGCTGATCTTTAACCAGAGAAC ATCATGTTGGTAGATCCATTCCGACAGCCGTATAGGGC
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.