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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NRP2
neuropilin 2

Gene

Official Symbol	NRP2
Official Full Name	neuropilin 2
CGNC ID	6545
also known as	neuropilin-2, neuropilin-2, neuropilin 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204284
Polypeptide	NP_989615
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.49257

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8828	ENSG00000118257		MIM:602070
Mouse	18187	ENSMUSG00000025969	All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(3) Gene trapped(2)	MGI:1100492
Xenopus	100101717, 414668			485734
Zebrafish	405902, 405901	ENSDARG00000038446	ZDB-GENE-040611-3, ZDB-GENE-040611-2	ZFIN:ZDB-GENE-040611-3, ZFIN:ZDB-GENE-040611-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374157
Ensembl Gene
KEGG	gga:374157

Entry 1

GEISHA Id	Neuropilin-2	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCAGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGCCCGGCTCATCAGCCCCACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGTGAACTTCCCAA GAATGAAGGATGACTTCCCGATCCCTGAGCAAGACTTTGAAGACAGCGATGATACTGGAAACTCGAAGCTGGACAAAGA AAAAAGCTGGCTCTACACTCTGGATCCCATCCTGGTGACCATCATAGCGATGAGCTCTCTCGGCGTCCTTCTCGGAGCC ATCTGTGCTGGTCTGCTGCTCTACTGCACGTGCTCATACGCGGGGCTGTCCTCACGGAGCTCCACCACGCTGGAGAACT ACAATTTTGAGCTGTACGACGGTATCAAGCACAAGGTCAAGATGAACCACCAGAAGTGCTGCTCCGAGGCATGA

Stage

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4-6

stage 6

Blood Islands
Blood Vessels
Forebrain
Mesoderm, early
Neural Plate/Tube

7-9

stage 7

stage 9

Blood Islands
Blood Vessels
Forebrain
Midbrain
Neural Plate/Tube
Somites

Entry 2

GEISHA Id	Np2a.Davey.2007	Data Source	Publication
Complete cDNA Template Probe	show GCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGTACTACTTGATCCAACA GGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAACATGCAGATCAGTGCC TCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAACGGCTGGACCCCCAATG TAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTGCTACACAGGGTGCCAT CTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGGGGAGGACTGGATGATG TACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTCAACAAGATCCACAGCC CAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGCTGGAGCTGTATGGCTG CCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTCGCAGATCTCGGCCTCT TCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGGTTTCCACGCATCCCCC AAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCGTCATTATCCAGGGGGC TCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGCCTACAGCATGAATGGA AAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATCCATTATGATATCCCTG AAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCCCAGCAGGAATAGGAAT GCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCCCACTTTGAAGAGCGAA GAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAAGAGGAAGATTTCCATC TTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTT
Citation	Davey MG, James J, Paton IR, Burt DW, Tickle C. Analysis of talpid3 and wild-type chicken embryos reveals roles fro Hedgehog signalling in development of the limb bud vasculature. Dev Biol. 2007 Jan 1;301(1):155-65.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	Authors said: Neuropilin 2a (forward primer 5′-GCGTCCCTGTCTCTCACCTTC-3′, reverse primer 5′-AACCACACAGGTCTTCAGGG-3′. Probe sequence was selected using this information from NCBI Acc# NM_204284.1.

Stage

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stage 25

Veins
Wing

Marginal Sinus

Entry 3

GEISHA Id	Npn2.Gammill.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCAGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGCCCGGCTCATCAGCCCCACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGTGAACTTCCCAA GAATGAAGGATGACTTCCCGATCCCTGAGCAAGACTTTGAAGACAGCGATGATACTGATTACTTTGGATCGGATAAGAA CGACACCCTGTTCTCTACTAACTCTCCAGGAAACTCGAAGCTGGACAAAGAAAAAAGCTGGCTCTACACTCTGGATCCC ATCCTGGTGACCATCATAGCGATGAGCTCTCTCGGCGTCCTTCTCGGAGCCATCTGTGCTGGTCTGCTGCTCTACTGCA CGTGCTCATACGCGGGGCTGTCCTCACGGAGCTCCACCACGCTGGAGAACTACAATTTTGAGCTGTACGACGGTATCAA GCACAAGGTCAAGATGAACCACCAGAAGTGCTGCTCCGAGGCATGA
Citation	Gammill LS, Gonzalez C, Gu C, Bronner-Fraser M. Guidance of trunk neural crest migration requires neuropilin 2/semaphorin 3F signaling. Development. 2006 Jan;133(1):99-106. Epub 2005 Nov 30.
Copyright	Published by The Company of Biologists 2005/6. This material is protected by a copyright retained by the authors. Permission granted by Dr. Bronner-Fraser.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204284.1).

Stage

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Location (click to highlight)

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stage 31

Dermomyotome
Neural Crest
Sclerotome
Somites

31 somite stage, need to convert to HH.

Entry 4

GEISHA Id	Neuropilin2.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCAGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGCCCGGCTCATCAGCCCCACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGTGAACTTCCCAA GAATGAAGGATGACTTCCCGATCCCTGAGCAAGACTTTGAAGACAGCGATGATACTGATTACTTTGGATCGGATAAGAA CGACACCCTGTTCTCTACTAACTCTCCAGGAAACTCGAAGCTGGACAAAGAAAAAAGCTGGCTCTACACTCTGGATCCC ATCCTGGTGACCATCATAGCGATGAGCTCTCTCGGCGTCCTTCTCGGAGCCATCTGTGCTGGTCTGCTGCTCTACTGCA CGTGCTCATACGCGGGGCTGTCCTCACGGAGCTCCACCACGCTGGAGAACTACAATTTTGAGCTGTACGACGGTATCAA GCACAAGGTCAAGATGAACCACCAGAAGTGCTGCTCCGAGGCATGA
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments

Stage

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Comments (click to highlight)

13-18

stage 13

stage 17

Brainstem Nuclei
Hindbrain
Isthmus/MHB
Midbrain

19-20

stage 20

Brainstem Nuclei
Hindbrain
Isthmus/MHB
Midbrain

Entry 5

GEISHA Id	NPN2.Gammill.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCAGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGCCCGGCTCATCAGCCCCACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGTGAACTTCCCAA GAATGAAGGATGACTTCCCGATCCCTGAGCAAGACTTTGAAGACAGCGATGATACTGATTACTTTGGATCGGATAAGAA CGACACCCTGTTCTCTACTAACTCTCCAGGAAACTCGAAGCTGGACAAAGAAAAAAGCTGGCTCTACACTCTGGATCCC ATCCTGGTGACCATCATAGCGATGAGCTCTCTCGGCGTCCTTCTCGGAGCCATCTGTGCTGGTCTGCTGCTCTACTGCA CGTGCTCATACGCGGGGCTGTCCTCACGGAGCTCCACCACGCTGGAGAACTACAATTTTGAGCTGTACGACGGTATCAA GCACAAGGTCAAGATGAACCACCAGAAGTGCTGCTCCGAGGCATGA
Citation	Gammill LS, Gonzalez C, Bronner-Fraser M. Neuropilin 2/semaphorin 3F signaling is essential for cranial neural crest migration and trigeminal ganglion condensation. Dev Neurobiol. 2007 Jan;67(1):47-56.
Copyright	Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204284.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 10

Dermomyotome
Early Endoderm
Neural Crest
Neural Plate/Tube
Somites

stage 13

Ear/Otic Placode
Head Mesenchyme
Neural Crest
Neural Plate/Tube
Somatic Mesoderm
Somites

Entry 6

GEISHA Id	NPN2.Mauti.2006	Data Source	Publication
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCAGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAGGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGACGTTTCAGGCCAATGAGGACGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGCCCGGCTCATCAGCCCCACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGTGAACTTCCCAA GAATGAAGGATGACTTCCCGATCCCTGAGCAAGACTTTGAAGACAGCGATGATACTGATTACTTTGGATCGGATAAGAA CGACACCCTGTTCTCTACTAACTCTCCAGGAAACTCGAAGCTGGACAAAGAAAAAAGCTGGCTCTACACTCTGGATCCC ATCCTGGTGACCATCATAGCGATGAGCTCTCTCGGCGTCCTTCTCGGAGCCATCTGTGCTGGTCTGCTGCTCTACTGCA CGTGCTCATACGCGGGGCTGTCCTCACGGAGCTCCACCACGCTGGAGAACTACAATTTTGAGCTGTACGACGGTATCAA GCACAAGGTCAAGATGAACCACCAGAAGTGCTGCTCCGAGGCATGA
Citation	Mauti O, Sadhu R, Gemayel J, Gesemann M, Stoeckli ET. Expression patterns of plexins and neuropilins are consistent with cooperative and separate functions during neural development. BMC Dev Biol. 2006; 6: 32. Published online 2006 July 17.
Copyright	), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Stage

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13-18

stage 18

Notochord
Spinal Cord

19-24

stage 22

Dermomyotome
Spinal Cord
Spinal Ganglia and Nerves

25-30

stage 25

stage 30

Spinal Cord
Spinal Ganglia and Nerves

31-40

stage 35

stage 40

Spinal Cord

Entry 7

GEISHA Id	NP2.Herzog.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGGATACGTTTCTTTTGGCGTGGGGATTTCTAGGGCTGTGCTTGCCCGGCTCCGGAGGCGCGGCGGAGACAGCTCAGC CGTGTGGGGGCCGCCTGAACTCCAAGGACGCCGGGTACATCACCTCCCCAGGCTACCCCAATGACTACCCCTCCCACCA GAACTGCGAGTGGGTCATCTACGCTCCTGAGCCCAACCAGAAGATTATCCTCAACTTCAACCCTCACTTCGAAATCGAA AAGCATGATTGCAAGTATGACTTCATTGAGATCCGAGATGGAGACAGCGAAGCAGCCGACCTGCTGGGCAAGCACTGCG GGAACATCGCACCTCCTACCATCATCTCGTCGGGCTCCTCTCTCTACATCAAGTTCACCTCGGACTACGCGCGGCAAGG GGCCGGCTTCTCCCTGCGCTATGAGATCTACAAGACAGGCTCTGAGGACTGTTCCAGAAACTTCACTGCCTCCAATGGT ACTATTGAGTCTCCAGGTTTCCCTGACAAATATCCACACAACCTGGACTGCGTCTTCACCATCATAGCCAAGCCAAAGA CAGAAATCCTCCTCCACTTTGTGCTCTTTGACCTCGAGCATGACCCTCTGCAGGCAGGGGAGGGAGACTGCAAGTATGA CTGGCTGGACATCTGGGACGGCATCCCTCAAGTTGGCCCTTTGATAGGCAGGTACTGTGGCACTAAGATGCCATCGGAC ATCCGCTCGACCACCGGCGTCCTGTCTCTCACCTTCCACACTGACCTGGCTGTGGCTAAAGATGGTTTCTCTGCTCAGT ACTACTTGATCCAACAGGAAGTGCCTGAAAACTTCCAGTGCAATGTGCCGCTGGGGATGGAGTCTGGCAGGATCTCCAA CATGCAGATCAGTGCCTCCTCCACCTACTCAGATGGGCGATGGACGCCCCAGCAGAGCCGGCTCAACAGCGATGACAAC GGCTGGACCCCCAATGTAGACAGCAACAAAGAGTACCTCCAGGTGGACCTCCACTTCCTGACTGTGCTCACAGCCATTG CTACACAGGGTGCCATCTCCAGAGAAACCCAGAATGGGTACTATGTCCGTACTTACAAGCTGGAGGTCAGCACCAACGG GGAGGACTGGATGATGTACCGACATGGTAAAAACCACAAGATGTTTCAGGCCAATGAGGATGCCACGGAGGTGGTTCTC AACAAGATCCACAGCCCAGTGCTCACACGCTTTGTGCGCATCCGTCCCCAGAGCTGGCACAACGGCATCGCCCTGAGGC TGGAGCTGTATGGCTGCCGCATCACCGATTCGCCCTGCTCCAACTTGCTGGGGATGCTTTCTGGCCTCATCCCTGACTC GCAGATCTCGGCCTCTTCTATCAGAGGCTACGACTGGTCCCCCAGCATGGCCCGCTTGGTGAGCAGCCGTTCAGGCTGG TTTCCACGCATCCCCCAAGCCCAGCCTGGGGAGGAGTGGCTGCAAGTGGACCTGGGCGTCCCAAAGAACGTCAAAGGCG TCATTATCCAGGGGGCTCGCGGAGGGGACAGCGTGACCACCACCGAGTCCCGCTCCTTCGTGAAGAAGTTTAAGGTAGC CTACAGCATGAATGGAAAGGACTGGGAATTCATCCAGGACCCCAAGACGATGCAGGCCAAGCTCTTTGAAGGCAACATC CATTATGATATCCCTGAAATCCGGAGGTTTGACCCCGTTCCTGCCCAGTACGTCCGAGTGCACCCAGAGAGGTGGTCCC CAGCAGGAATAGGAATGCGTCTGGAAGTGTTGGGATGCGATTGGACAGACGTGAAGCCCACTGCAGAGACACTGGTGCC CACTTTGAAGAGCGAAGAGACCACCACCCCATATCCAACTGATGAAGAGGCGACTGAGTGTGGTGATAGCTGTGGAGAA GAGGAAGATTTCCATCTTCCTGCAAACTTCAACTGCAACTTTGATCTCCCTGAAGACCTGTGTGGTTGGTCACACGACT CGGCAACGGGCTACACGTGGTCTTTTCAGCCTGCAAGCACCTGGATGGGCAACTCTGAACCAAGTCCCGAGACTCTGCC TGATGCCAAGAGCTACCTGCGGCTGCAGAGCAGTGGGAGGAGGGAAAGCCAGCGCGTCCGGCTCATCAGCCCTACCATC TACCTGCCCCGCAGCGCCGTCTGCATGGTGTTCCAGTACCAGGTGTGGGGCAGCAGTGGAGTGATGCTGCGGGTCTGGC GGGAGGCCAGCCAGGAGCACAAGGCGCTGTGGGTCATCGCAGAGGACCAGGGCAAGGAGTGGAGGGAGGGCCGCATCAT CCTGCCCAGCTACGACATGGAGTACCGGATAGTGTTTGAGGGATTTATACGCAATGGCCACGCAGGAGAGCTCGCCCTG GATGACATCCGGCTGGGCAACGACATCCCCCTGGAGTACTGCATGGAACCCATCACAGCTTTCCCAGGGGCAACCCTCC TGCCAGGGACCGAGCCCACAGTGGACACGGTGTCAGTGCAGCCCATCCCAGCCTACTGGTATTACGTTATTGCCGCCGG AGGTGCTGTTGTGGTGCTGGTCTCCGTCGCGCTGGCTCTTGTGCTCCACTACCACCGGTTCCGCTATGCGGCCAAGAAG AGCGATCACTCCATCACCTACAAAACCTCCCACTATGCCAACGGGGCCCCCGTGGCCGTGGAGCCCACCCTAACCATAA AACTAGAGCAAGACCCCAGCTCACGCTGCTGA
Citation	Herzog Y, Guttmann-Raviv N, Neufeld G. Segregation of arterial and venous markers in subpopulations of blood islands before vessel formation. Dev Dyn. 2005 Apr;232(4):1047-55.
Copyright	Copyright © 2005 Wiley-Liss, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # AB090235.1 ).