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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BACH2
BTB domain and CNC homolog 2

Gene

Official Symbol	BACH2
Official Full Name	BTB domain and CNC homolog 2
CGNC ID	11632
also known as	transcription regulator protein BACH2\|BTB and CNC homology 1, basic leucine zipper transcription factor 2\|BTB and CNC homology 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_419833
Polypeptide	XP_419833

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	60468	ENSG00000112182		MIM:605394
Mouse
Xenopus	100485849			994312
Zebrafish	555350	ENSDARG00000004074	ZDB-GENE-041001-139, ZDB-GENE-120525-2	ZFIN:ZDB-GENE-041001-139, ZFIN:ZDB-GENE-120525-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421809
Ensembl Gene
KEGG	gga:421809

Entry 1

GEISHA Id	ChEST1024h14	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCGGCTCGAGCGCGGAGGCGCGGCGAGAGCGATGAGGCAAGAGAGAAGTTTTTAAAAACAGAAAAATGTGATTGCAGAA ACATCATTGTTGGCAGGAGGACTCGGTGGATTCAGATATAACTGTAGGTGCTTCTTGTATGAAAGAGCTGAGCCACACC ATCCAGTAAACTGTCTAAAGCAGCTGTTGGCTTGCTTGGAAATCACTTCCAGAACTGTTGTAAGTTGATATTGACTGAG TTGCCAGCACATTGCCCTGCAAAGCTTTGGAGGGCCACTTCTTAATGGATTGCTGTAGCCTCTTAATTTCTCCACTGAT CCTGTTCCCTGCATCGTGAGAACAATTTAGCCAGCACAGAACCTAGAAAAGTTACATGGTGTGAACGGCATGTCTGTGG ATGAGAAGACTGACTCCCCCATGTATGTGTATGAGTCAACAGTGCACTGTACCAATATTCTCCTCTGCTTAAATGACCA GCGCAAGCAGGATATTCTCTGCGACGTGACACTCATCGTGGAGGGGAAGGAGTTCCGCGCCCACCGGGCTGTGCTGGCC GCCTGCAGCGAGTACTTCTTGCAGGCCTTGGTGGGGCAGACGGAAAATGACCTGGTTGTCAGCCTGCCAGAAGAGGTCA CTGTCAGAGGATTTGGTCCATTGCTACAGTTTGCCTACACTGCTAAGCTGTTACTCAGCAGAGAAAACATCCAGGAGGT CATCCACTGTGCTGAGTTCCTGCGCATGCACAACCTGGAGGACTCCTGCTTCAGCTTCCTTCAGACGCAGCTGCTGAAC AACGAAGATGGCCTGTTCCTGTGCAAAAGGATACCACTTGTCAGCGCATGCATGATG

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida
Ubiquitous

7-12

stage 9

stage 10

Extraembryonic
Lateral Plate Mesoderm

13-18

stage 17

Heart Tube
Limb Buds
Paraxial Mesoderm

19-21

stage 21

Cranial Ganglia
Face Mesenchyme
Limb Buds
Nasal Placcode/Nerve
Paraxial Mesoderm
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	BACH2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATTCAGGGGGCCCGGCTTTGAA
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGTGGCTACTCTGCTCTCGCGGA	cDNA Template Length	1213
Forward cDNA Template Probe	show GGGGGCCCGGCTTTGAAACTCTCTGTAAGCAAGAGGGGGAACTGGACAGGAGGAGTGTTATATTCTCTTCAAACGCTTG TGACCAAGTAAACACTTCGGTGCATTCATATTCTGGTGTGAGCAGCTTGGACAAAGACCTCACTGAGACTGTGCCAAAG GGTCTGTGGGCTGGCGGTAGCCAGTCTCTCCCCAGCTCTCAGACCTATTCCCACAGCGGACTGACAGCTGATCACTTGT CAGGAAGGATGCGGCCGAACACCAGCTGTCCAGTGCCAATTAAAGTTTGCCCTCGCTCACCTCCTTTAGAGACCAGAAC GAGGACCTCCAGCTCGTGTTCTTCCTACTCATATGCAGAGGACGGCAGCGGCGGCTCTCCCTGCAGCCTACGTCTGTGT GAGCTCTCCTCTTCCCCTTGCTCCCAAGGCCCCCGATTCCTGGCGCCCGAGCACCAGGAGCCCGGTGTGGTGGGAGATG GATTGTACAACCCAGTTCGAGCCCAGATTAAATGTGAGCCATCCTATGGAACAAACTCCAGCGATGAGTCTGGGTCATT CTCAGAAGCAGACAGTGAATCATGTCCTGTGCAAGACAGAGGGCATGAGGTGAAACTTCCTTTTCCTGTTGATCAAATC ACAGATCTTCCAAGGAATGATTTCCAGATGATGATAAAGATGCACAAACTAACCTCAGAACAGCTCGAGTTCATCCATG ATGTTCGCCGGCGCAGCAAGAACCGAATTGCAGCTCAGCGCTGCCGCAAGAGAAAACTGGACTGTATTCAGAACCTCGA ATGTGAAATCCGCAAGTTGGTGTGTGAGAAAGAGAAGTTGCTCTCAGAAAGGAACCAGCTGAAAGCAAGCATGGGCGAA CTGCTAGATAACTTCTCGTGTCTTTCCCAAGAAGTGTGCAGAGACATGCAGAGCCCGGAACAGATCCAAGCCCTTCACC GCTACTGCCCTGTTCTCAGACCCATGGATCTGCAGACGGCCACCAACATCAGCCCCCCAACGGGCGTGGAGCAGGGCCT GGCGACGTCGCAGTGTGTTGGGGAAGGCATGCAGTGCTGCTCAGAGCAGGGCCCCGTGCAGCTGGGAGCATCCTGGCTG CCCAACAATGTCTCAGAGAATTGCTCGGCCAGCGGCGGGGGGTTGGATGGAGCTGAGCCAGGTACTTACCCTGAGAGAG AGCTTCCGCGAGAGCAGAGTAGCCAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Epiblast
Hensen's Node
Primitive Streak

4-6

stage 4

stage 6

Epiblast
Headfold
Hensen's Node
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

7-12

stage 8

stage 9

stage 11

Anterior Intestinal Portal
Extraembryonic Mesoderm
Heart
Heart Tube
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites

13-18

stage 15

stage 17

Anterior/Second Heart Field
Heart Tube
Limb Buds
Somatic Mesoderm
Somites

19-24

stage 23

Eye
Heart
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
Wing Mesenchyme

stage 25

Eye
Heart
Leg Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
Wing Mesenchyme

Entry 3

GEISHA Id	BACH2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGGCTCGAGCGCGGAGGCGCGGCGGAGAGCGATGAGGCAAGAGAGAAGTTTTTAAAAACAGAAAAATGTGATTGCAGA AACATCATTGTTGGCAGGAGGACTCGGTGGATTCAGATATAACTGTAGGTGCTTCTTGTATGAAAGAGCTGAGCCACAC CATCCAGTAAACTGTCTAAAGCAGCTGTTGGCTTGCTTGGAAATCACTTCCAGAACTGTTGTAAGTTGATATTGACTGA GTTGCCAGCACATTGCCCTGCAAAGCTTGGAGGGCCACTTCTTAATGGATTGCTGTAGCCTCTTAATTTCTCCACTGAT CCTGTTCCCTGCATCGTGAGAACAATTTAGCCAGCACAGAACCTAGAAAAGTTACATGGTGTGAACGGCATGTCTGTGG ATGAGAAGACTGACTCCCCCATGTATGTGTATGAGTCAACAGTGCACTGTACCAATATTCTCCTCTGCTTAAATGACCA GCGCAAGCAGGATATTCTCTGCGACGTGACACTCATCGTGGAGGGGAAGGAGTTCCGCGCCCACCGGGCTGTGCTGGCC GCCTGCAGCGAGTACTTCTTGCAGGCCTTGGTGGGGCAGACGGAAAATGACCTGGTTGTCAGCCTGCCAGAAGAGGTCA CTGTCAGAGGATTTGGTCCATTGCTACAGTTGGGCTACACGTGCTAAAGCTGTTACTCAGCAGAGAAAACATCCAGGAG GTCATCCAACTGTGCTGAGTTCCTGCGCATGCACAACTTGGAGGACTCCTGGCTTCAGCTTTCCTTCAAGACGCAGCTG CTTGAACAACGAAGGATGGCCTGTTCCCGGTGCAACAAAGGATACCACTTGTCAGCGCATGCTTGATGAAGAAAACTCG GATGGAGCATTGAGGAGGGAGACGAATTGGAATCGGGA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.