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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDH4
cadherin 4

Gene

Official Symbol	CDH4
Official Full Name	cadherin 4
CGNC ID	50945
also known as	cadherin-4, cadherin-4\|R-CAD\|R-cadherin\|cadherin 4, type 1, R-cadherin (retinal)\|retinal cadherin, Cadherin-4 precursor , Retinal-cadherin, R-cadherin, R-CAD, CDH4
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001004391
Polypeptide	NP_001004391
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3334

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1002	ENSG00000179242		MIM:603006
Mouse	12561	ENSMUSG00000000305	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:99218
Xenopus	100144729			958012
Zebrafish	30297	ENSDARG00000015002	ZDB-GENE-991207-1	ZFIN:ZDB-GENE-991207-1

Gene Ontology

Molecular Function	calcium ion binding
Biological Process	homophilic cell adhesion
Cellular Component	integral component of membrane, plasma membrane

Links to other databases

Entrez Gene	419222
Ensembl Gene
KEGG	gga:419222

Entry 1

GEISHA Id	CDH4.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TCACGACCAGCACTTATTCGG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGCGTTTCATCCACACCACAAAGAG	cDNA Template Length	1099
Forward cDNA Template Probe	show AGATCAGGATGGCGATGATGGCTCCCGTGCCCAGTCCTGCAGCAGCCACCGCCCCAATAGTGGTGCAGTCACCGTTCTC GTCACANGGGCACACCTTCACTTTGATGATGGACGTGTTGTACAAGGGGGGATTTCCCGAGTCTGTCACTATGATTGGC ACATCATACACACCGGCCTCCAGGTACATGATCCGTAAACTAAGCTGGGCGTAATCACCATTCAGTCGTGTTATGGTCC AGTTCTTCCTCACCGCAGATGGCACACTTGGCAGCTCGAAGACAAAGGGCCCAACGTTTGGATCGATGTCAGCATCTGC GGCTGTGATATTGATGACATTCAGGTTTGGCTTTTCACAGATCTGTGCTTCCTTTGGCAGGAGCTCAGGAGCATTATCG TTGATGTCGATTAGGTAGATCTGCAGAGTGCCAGTGCCGCTGGCTGGGGGTATACCATTGTCAGCCGCCAAGAATGTGG CCTCGTAGACATTATTCTTAATGTAGTCTGACTCTCGATCAAGGACAGCAGCAGTAGTGATCTGACCATTTGTGGCATT AATGTTCAGCCAGTTTGCAGGATCTGACAGCTTAGAGTATCTTACTGCCTGCTGCATGAAGCGATCGGGATCTACGGCT GAAAAGGTCGTGAGGACCGTCCCCGTGGGCACGCCTTCCTCCAGCCTGATGAGCTTGTGGTTTGTTGGGAAGTACGGCG CTTCGTTGACATCTGTAACTGAAATGGTGACTCCTGCTGTTGACTGGAAGGACATCTGGATTCCGCTGGCCAGGGGGGC TTGGTTGGATACCATCACTGTCANCATGAACGCTCTGTTCATCTCATAGTCNACTGCCTTGACCACAGTTACCATGCCC CTCATTGGTGACGGGGTCNGTCCGGATGGTGAAGTGGCCAAAGGGGTCCCCACTGATGATGCGGTAAATGGCATTCCAN TTGGGAAAATGAAGGCTGGTCCCNGGTCCATCACTGTCNAANTTTGCAACCACNANCCTCCACTCTGTTCTCAGGAACT TCCCCC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Notochord

7-12

stage 7

stage 8

stage 9

stage 11

stage 12

Amnion
Anterior Neuropore
Extraembryonic
Forebrain
Headfold
Heart
Hindbrain
Intermediate Mesoderm
Midbrain
Notochord
Somites
Spinal Cord

13-18

stage 17

stage 18

Cranial PNS
Dermomyotome
Liver
Notochord
Pharyngeal Arches and Clefts

19-24

stage 21

stage 22

Cranial PNS
Dermomyotome
Myotome
Notochord
Pharyngeal Arches and Clefts
Spinal Cord

25-26

stage 26

Cranial PNS
Leg Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Wing Mesenchyme

Entry 2

GEISHA Id	R-Cad.Jiankai.2007	Data Source	Publication
Complete cDNA Template Probe	show CGCTTCACCTGCAGCCCAGAGCGGGCACCGAGCGGCGGTGGTGGGGTTCGAGAGTGTGCGTGGCTGTCGTCGGTGTCCT CGCGCAGTGCGGCCGGAGAGCGGCACGGGGCGGCCGAGCGCACCGCCACGGCCCGGCGGGCGGGCGCCGCCGGGGCGAT GAGGACCGGCTCGCGGCTGCTGCTGGTGCTGCTCGTCTGGGGCTCGGCGGCGGCACTCAATGGGGATCTTACAGTTAGA CCCACATGCAAGCCTGGCTTTTCAGAAGAAGACTATACAGCGTTCGTCTCCCAGAATATCATGGAAGGGCAGAAGCTAC TCAAAGTAAAATTTAATAACTGTGCCGGTAACAAGGGAGTTCGGTACGAAACCAACAGCCTGGACTTCAAGGTGAGAGC AGATGGGACCATGTATGCTGTCCACCAGGTGCAAATGGCCTCGAAGCAGCTGATCCTGATGGTGACCGCCTGGGATCCA CAGACTCTGGGCAGGTGGGAGGCGATCGTCAGGTTTCTGGTGGGAGAAAAGCTGCAGCACAATGGACACAAGCCAAAGG GAAGGAAGAGCGGACCTGTGGACCTGGCACAGCAGCAAAGTGACACCCTGCTCCCCTGGCGCCAACATCAGAGCGCAAA AGGCCTCCGGAGGCAGAAGAGAGACTGGGTCATTCCCCCAATCAACGTGCCAGAAAATTCAAGGGGCCCCTTTCCGCAG CAACTGGTTCGGATTCGTTCCGATAAGGACAAAGAGATCCATATCAGGTACAGCATCACCGGAGTGGGAGCCGACCAGC CACCAATGGAAGTCTTCAGCATTGACCCTGTGTCTGGGAGGATGTATGTGACCCGCCCTATGGACAGAGAGGAAAGAGC TTCCTACCATCTCCGGGCTCATGCAGTGGATATGAATGGAAACAAGGTGGAGAATCCTATTGACCTTTACATCTATGTG ATTGATATGAATGACAACAGACCGGAGTTTATAAACCAAGTCTATAATGGATCTGTTGATGAAGGCTCTAAACCAGGTA CCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGAC TCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGC CTTGACAGGGAGAAAGTTCAGCAGTATATGGTCATCGTTCAAGCCACAGATATGGAAGGCAATCTTAACTATGGTCTCT CAAACACAGCGACTGCAATCATTACGGTGACAGATGTGAATGACAACCCCCCTGAATTCACGACCAGCACTTATTCGGG GGAAGTTCCTGAGAACAGAGTGGAGGTTGTGGTTGCAAATTTGACAGTGATGGACCGGGACCAGCCTCACTCTCCCAAC TGGAATGCCATCTACCGCATCATCAGTGGGGACCCCTCTGGCCACTTCACCATCCGGACAGACCCCGTCACCAATGAGG GCATGGTAACTGTGGTCAAGGCAGTCGACTATGAGATGAACAGAGCATTCATGCTGACAGTGATGGTATCCAACCAAGC CCCCCTGGCCAGCGGAATCCAGATGTCCTTCCAGTCAACAGCAGGAGTCACCATTTCAGTTACAGATGTCAACGAAGCG CCGTACTTCCCAACAAACCACAAGCTCATCAGGCTGGAGGAAGGCGTGCCCACGGGGACGGTCCTCACGACCTTTTCAG CCGTAGATCCCGATCGCTTCATGCAGCAGGCAGTAAGATACTCTAAGCTGTCAGATCCTGCAAACTGGCTGAACATTAA TGCCACAAATGGTCAGATCACTACTGCTGCTGTCCTTGATCGAGAGTCAGACTACATTAAGAATAATGTCTACGAGGCC ACATTCTTGGCGGCTGACAATGGTATACCCCCAGCCAGCGGCACTGGCACTCTGCAGATCTACCTAATCGACATCAACG ATAATGCTCCTGAGCTCCTGCCAAAGGAAGCACAGATCTGTGAAAAGCCAAACCTGAATGTCATCAATATCACAGCCGC AGATGCTGACATCGATCCAAACGTTGGGCCCTTTGTCTTCGAGCTGCCAAGTGTGCCATCTGCGGTGAGGAAGAACTGG ACCATAACACGACTGAATGGTGATTACGCCCAGCTTAGTTTACGGATCATGTACCTGGAGGCTGGTGTGTATGATGTGC CAATCATAGTGACAGACTCGGGAAACCCCCCCTTGTACAACACGTCCATCATCAAAGTGAAGGTGTGCCCGTGTGACGA GAACGGTGACTGCACCACTATTGGGGCGGTGGCTGCTGCAGGACTGGGCACGGGAGCCATCATCGCCATCCTGATCTGC ATCATTATCTTACTAACCATGGTGCTGCTCTTTGTGGTGTGGATGAAACGCCGGGAGAAGGAGCGTCACACCAAGCAGC TCCTCATTGACCCCGAGGATGACGTGAGGGACAACATCCTGAAGTACGACGAGGAGGGTGGTGGAGAAGAAGATCAGGA TTACGACTTAAGCCAGCTCCAGCAGCCAGAGACCATGGATCACGTGCTGAACAAGGCACCTGGAGTCCGAAGGGTGGAT GAGAGACCGATCGGTGCTGAACCACAGTATCCTATAAGACCAGTAATCCCCCATCCTGGGGATATTGGTGACTTTATAA ATGAGGGCCTGCGTGCAGCAGACAATGACCCCACGGCTCCCCCGTACGACTCGCTGCTGGTCTTTGACTACGAGGGCAG CGGCTCCACCGCCGGCTCCGTCAGCTCCCTCAACTCCTCCAGCTCCGGGGACCAGGACTACGACTACCTGAACGACTGG GGGCCGCGCTTCAAGAAGCTGGCAGACATGTATGGAGGAGGCGAGGAGGATTGAACTGACCTCACTTATTTAAAAAAAA AAAAAAATAGAAGGAAAAAAAAAAAAAAAAA
Citation	Luo J, Wang H, Lin J, Redies C. Cadherin expression in the developing chicken cochlea. Dev Dyn. 2007 Aug;236(8):2331-7.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Authors stated "For in situ hybridization, purified plasmids containing the full-length sequences encoding chicken Cad6B, Cad7, N-Cad, and R-Cad (kind gifts of Dr. S. Nakagawa and Dr. M. Takeichi), ... were used as templates for the in vitro synthesis of cRNA probes." Sequence below was obtained from NCBI (NM_001004391).

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 37

stage 40

stage 44

Ear/Otic Placcode

Entry 3

GEISHA Id	RCDH.Lin.2010	Data Source	Publication
Complete cDNA Template Probe	show CGCTTCACCTGCAGCCCAGAGCGGGCACCGAGCGGCGGTGGTGGGGTTCGAGAGTGTGCGTGGCTGTCGTCGGTGTCCT CGCGCAGTGCGGCCGGAGAGCGGCACGGGGCGGCCGAGCGCACCGCCACGGCCCGGCGGGCGGGCGCCGCCGGGGCGAT GAGGACCGGCTCGCGGCTGCTGCTGGTGCTGCTCGTCTGGGGCTCGGCGGCGGCACTCAATGGGGATCTTACAGTTAGA CCCACATGCAAGCCTGGCTTTTCAGAAGAAGACTATACAGCGTTCGTCTCCCAGAATATCATGGAAGGGCAGAAGCTAC TCAAAGTAAAATTTAATAACTGTGCCGGTAACAAGGGAGTTCGGTACGAAACCAACAGCCTGGACTTCAAGGTGAGAGC AGATGGGACCATGTATGCTGTCCACCAGGTGCAAATGGCCTCGAAGCAGCTGATCCTGATGGTGACCGCCTGGGATCCA CAGACTCTGGGCAGGTGGGAGGCGATCGTCAGGTTTCTGGTGGGAGAAAAGCTGCAGCACAATGGACACAAGCCAAAGG GAAGGAAGAGCGGACCTGTGGACCTGGCACAGCAGCAAAGTGACACCCTGCTCCCCTGGCGCCAACATCAGAGCGCAAA AGGCCTCCGGAGGCAGAAGAGAGACTGGGTCATTCCCCCAATCAACGTGCCAGAAAATTCAAGGGGCCCCTTTCCGCAG CAACTGGTTCGGATTCGTTCCGATAAGGACAAAGAGATCCATATCAGGTACAGCATCACCGGAGTGGGAGCCGACCAGC CACCAATGGAAGTCTTCAGCATTGACCCTGTGTCTGGGAGGATGTATGTGACCCGCCCTATGGACAGAGAGGAAAGAGC TTCCTACCATCTCCGGGCTCATGCAGTGGATATGAATGGAAACAAGGTGGAGAATCCTATTGACCTTTACATCTATGTG ATTGATATGAATGACAACAGACCGGAGTTTATAAACCAAGTCTATAATGGATCTGTTGATGAAGGCTCTAAACCAGGTA CCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGAC TCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGC CTTGACAGGGAGAAAGTTCAGCAGTATATGGTCATCGTTCAAGCCACAGATATGGAAGGCAATCTTAACTATGGTCTCT CAAACACAGCGACTGCAATCATTACGGTGACAGATGTGAATGACAACCCCCCTGAATTCACGACCAGCACTTATTCGGG GGAAGTTCCTGAGAACAGAGTGGAGGTTGTGGTTGCAAATTTGACAGTGATGGACCGGGACCAGCCTCACTCTCCCAAC TGGAATGCCATCTACCGCATCATCAGTGGGGACCCCTCTGGCCACTTCACCATCCGGACAGACCCCGTCACCAATGAGG GCATGGTAACTGTGGTCAAGGCAGTCGACTATGAGATGAACAGAGCATTCATGCTGACAGTGATGGTATCCAACCAAGC CCCCCTGGCCAGCGGAATCCAGATGTCCTTCCAGTCAACAGCAGGAGTCACCATTTCAGTTACAGATGTCAACGAAGCG CCGTACTTCCCAACAAACCACAAGCTCATCAGGCTGGAGGAAGGCGTGCCCACGGGGACGGTCCTCACGACCTTTTCAG CCGTAGATCCCGATCGCTTCATGCAGCAGGCAGTAAGATACTCTAAGCTGTCAGATCCTGCAAACTGGCTGAACATTAA TGCCACAAATGGTCAGATCACTACTGCTGCTGTCCTTGATCGAGAGTCAGACTACATTAAGAATAATGTCTACGAGGCC ACATTCTTGGCGGCTGACAATGGTATACCCCCAGCCAGCGGCACTGGCACTCTGCAGATCTACCTAATCGACATCAACG ATAATGCTCCTGAGCTCCTGCCAAAGGAAGCACAGATCTGTGAAAAGCCAAACCTGAATGTCATCAATATCACAGCCGC AGATGCTGACATCGATCCAAACGTTGGGCCCTTTGTCTTCGAGCTGCCAAGTGTGCCATCTGCGGTGAGGAAGAACTGG ACCATAACACGACTGAATGGTGATTACGCCCAGCTTAGTTTACGGATCATGTACCTGGAGGCTGGTGTGTATGATGTGC CAATCATAGTGACAGACTCGGGAAACCCCCCCTTGTACAACACGTCCATCATCAAAGTGAAGGTGTGCCCGTGTGACGA GAACGGTGACTGCACCACTATTGGGGCGGTGGCTGCTGCAGGACTGGGCACGGGAGCCATCATCGCCATCCTGATCTGC ATCATTATCTTACTAACCATGGTGCTGCTCTTTGTGGTGTGGATGAAACGCCGGGAGAAGGAGCGTCACACCAAGCAGC TCCTCATTGACCCCGAGGATGACGTGAGGGACAACATCCTGAAGTACGACGAGGAGGGTGGTGGAGAAGAAGATCAGGA TTACGACTTAAGCCAGCTCCAGCAGCCAGAGACCATGGATCACGTGCTGAACAAGGCACCTGGAGTCCGAAGGGTGGAT GAGAGACCGATCGGTGCTGAACCACAGTATCCTATAAGACCAGTAATCCCCCATCCTGGGGATATTGGTGACTTTATAA ATGAGGGCCTGCGTGCAGCAGACAATGACCCCACGGCTCCCCCGTACGACTCGCTGCTGGTCTTTGACTACGAGGGCAG CGGCTCCACCGCCGGCTCCGTCAGCTCCCTCAACTCCTCCAGCTCCGGGGACCAGGACTACGACTACCTGAACGACTGG GGGCCGCGCTTCAAGAAGCTGGCAGACATGTATGGAGGAGGCGAGGAGGATTGAACTGACCTCACTTATTTAAAAAAAA AAAAAAATAGAAGGAAAAAAAAAAAAAAAAA
Citation	Lin J, Luo J, Redies C. Molecular characterization and expression analysis of ADAM12 during chicken embryonic development. Dev Growth Differ. 2010 Dec;52(9):757-69.
Copyright	© 2010 The Authors. Journal compilation © 2010 Japanese Society of Developmental Biologists.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001004391).