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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SEMA3F
semaphorin 3F

Gene

Official Symbol	SEMA3F
Official Full Name	semaphorin 3F
CGNC ID	49045
also known as	semaphorin-3F, semaphorin-3F\|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204258
Polypeptide	NP_989589

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	6405	ENSG00000001617		MIM:601124
Mouse	20350	ENSMUSG00000034684	All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(4) Gene trapped(1)	MGI:1096347
Xenopus	496575, 100158345			940270
Zebrafish	544658, 799945	ENSDARG00000011163, ENSDARG00000055373	ZDB-GENE-050513-1, ZDB-GENE-050513-2	ZFIN:ZDB-GENE-050513-1, ZFIN:ZDB-GENE-050513-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374109
Ensembl Gene	ENSGALG00000013370
KEGG	gga:374109

Entry 1

GEISHA Id	SEMA3F.Jin.2006	Data Source	Publication
Complete cDNA Template Probe	show TGGAGCACCTTCCTGAAGGCCCGGCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTC AGGACGTCTTCATCCAGCAGACTCAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTT CAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGT CCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACAC CCTCCATGAAGTCAACCAAGGACTACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGT CTACCCGGCCCACCGGCAGCCTCTGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTG GACGCGGCAGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCC GGGACGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGAC CATCTCCTCCAAGAGGCAACAGCTTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTG TATGGAGAAGCCTGTGCTGACTGCTGCCTGGCCCGCGACCCATACTGTGC
Citation	Jin Z, Chau MD, Bao ZZ. Sema3D, Sema3F, and Sema5A are expressed in overlapping and distinct patterns in chick embryonic heart. Dev Dyn. 2006 Jan;235(1):163-9.
Copyright	Copyright © 2006 Wiley-Liss, Inc.

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 28

Heart
Valves

Cardiac Cushion; Interventricular Septum
Mesenchyme of Cardiac Cushion

31-38

stage 35

stage 38

Heart
Myocardium

Entry 2

GEISHA Id	Sema3F.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show GAATTCGGCACGAGTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTTACTCCATGGCCGACATCCGCAT GGTGTTCAATGGGCCCTTCGCGCACAAGGAGGGCCCCAACTACCAGTGGATGCCCTACACGGGCAAAATGCCCTACCCC CGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGACTACCCCGACGAAGTGATCAACT TCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTCTGGTCGTGCGCACCAACGTCAA CTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGAGGTGCTTTTCCTGGGCACAGAT CGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGATGACATGGAGACAGAGGAGCTGATGCTGGAGGAGATCGAGG TGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGCTTTACGTGTCCTCGGCAGTAGG AGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTGCTGCTGCCCGCGACCCATACTG TGCCTGGGATGGCAGGGCCTGCAGCCGCTACTCAACATCCTCAAAGGCGGACANGCGGNAGGACGTCCGGCACGGCAAC CCCATGCGCCGTGCCGAGGTACAACTTCAATGCCACAAGAACA
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments	The authors indicate the clone used is Sema3F (ROS012B12). This corresponds to NCBI acc# AL584625.1.

Stage

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Location (click to highlight)

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13-18

stage 13

stage 17

Isthmus/MHB
Midbrain

19-20

stage 20

Isthmus/MHB
Midbrain

Entry 3

GEISHA Id	SEMA3F.Gammill.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGCCCGTGGCCACCGTCCTGCTCTGGGCCACCCTGCTGACCCTGGGCTGGCGGGCAGCCCACGGCAAGGACGGCGTGC CTCCTACCCCCAGGGTGCAGCTCTCCTTCAAAGAGCTGAAGGCCACCGGCACCGCGCACTTCTTCAACTTCCTGCTCAA CTCCAGTGACTACCGCATCCTGCTGAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTCCTCTCT CTGGACCTGCACGACATCAACCGCGAGCCCCTCATCATCCACTGGCCTGCCTCCCAGCAGAGGATCGAGGAGTGCATCC TGTCGGGCAAGAACAGCAATGGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGT GTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAGGATTATATCTTCTACCTA GAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAAATG AAGAGCTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGC CATGAGGACAGACCAGTACAATTCACGCTGGCTCAACGACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGC GAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCC GCATCGGGCGCATCTGCCTGAACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCG GCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTCAGGACGTCTTCATCCAGCAGACT CAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTT ACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTA CACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGAC TACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTC TGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGA GGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAG CTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGC TTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTG CTGCCTGGCCCGCGACCCATACTGTGCCTGGGATGGCAAGGCCTGCAGCCGCTACTCAGCATCCTCCAAGAGGCGGAGC AGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATGCCAACAAGAACACGGTGG AGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATG GCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAGCTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGC TTGCTGCTGCGTGCCCTGCAGCTCTCCGACAGCGGCCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGG TGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTCCTGCTGCAAGGCGAGCTGCCCCCCGCCGC GCTGCCGGGAGCCCCAACGCCGCGCTACCAGGACCTGCTGCAGCTGCTCACCCGCCCCGAGCTGGGACTCCTCGACCAG TACTGCCAGGGCTTCTGGCGACCGCCGGCCCCTGGCCCCCCCGAACCGCTGGCTGCCCTCAAAGCCAAGGAGCTGCAGG ACCAGAAGAAGCCAAGGAGCCGCCGGAATCACCCGCCAGAGAGCTGCGGGCACACATGA
Citation	Gammill LS, Gonzalez C, Bronner-Fraser M. Neuropilin 2/semaphorin 3F signaling is essential for cranial neural crest migration and trigeminal ganglion condensation. Dev Neurobiol. 2007 Jan;67(1):47-56.
Copyright	Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.

Stage

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Location (click to highlight)

Comments (click to highlight)

31-36

stage 36

Head Mesenchyme
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Rhombomeres
Surface Ectoderm

Entry 4

GEISHA Id	S3F.Herzog.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGCCCGTGGCCACCGTCCTGCTCTGGGCCACCCTGCTGACCCTGGGCTGGCGGGCAGCCCACGGCAAGGACGGCGTGC CTCCTACCCCCAGGGTGCAGCTCTCCTTCAAAGAGCTGAAGGCCACCGGCACCGCGCACTTCTTCAACTTCCTGCTCAA CTCCAGTGACTACCGCATCCTGCTGAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTCCTCTCT CTGGACCTGCACGACATCAACCGCGAGCCCCTCATCATCCACTGGCCTGCCTCCCAGCAGAGGATCGAGGAGTGCATCC TGTCGGGCAAGAACAGCAATGGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGT GTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAGGATTATATCTTCTACCTA GAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAAATG AAGAGCTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGC CATGAGGACAGACCAGTACAATTCACGCTGGCTCAACGACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGC GAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCC GCATCGGGCGCATCTGCCTGAACGACGATGGAGGACACTGCTGCCTGGTGAACAAATGGAGCACCTTCCTGAAGGCCCG GCTCGTCTGCTCCGTGCCAGGACCCGATGGGATCGAGACGCACTTTGATGAGCTTCAGGACGTCTTCATCCAGCAGACT CAGGACACCAAGAATCCTGTTATCTACGCCGTCTTCTCCGCATCGGGGTCGGTGTTCAAGGGCTCGGCTGTCTGCGTTT ACTCCATGGCCGACATCCGCATGGTGTTCAATAGGCCCTTCGCGCACAAGGAGGGTCCCAACTACCAGTGGATGCCCTA CACGGGCAAAATGCCCTACCCCCGGCCGGGCACCTGCCCCGGGGGGACCTTCACACCCTCCATGAAGTCAACCAAGGAC TACCCCGACGAAGTGATCAACTTCATGCGCTCTCACCCTCTGATGTACCACGCCGTCTACCCGGCCCACCGGCAGCCTC TGGTCGTGCGCACCAACGTCAACTACCGCTTCACCACCATCGCTGTTGACCAGGTGGACGCGGCAGATGGGCGCTATGA GGTGCTTTTCCTGGGCACAGATCGGGGCACGGTGCAGAAAGTCATTGTGCTGCCCCGGGACGACATGGAGACAGAGGAG CTGATGCTGGAGGAGATCGAGGTGTTCAAGGTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGGCAACAGC TTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTG CTGCCTGGCCCGCGACCCATACTGTGCCTGGGATGGCAAGGCCTGCAGCCGCTACTCAGCATCCTCCAAGAGGCGGAGC AGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATGCCAACAAGAACACGGTGG AGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATG GCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAGCTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGC TTGCTGCTGCGTGCCCTGCAGCTCTCCGACAGCGGCCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGG TGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTCCTGCTGCAAGGCGAGCTGCCCCCCGCCGC GCTGCCGGGAGCCCCAACGCCGCGCTACCAGGACCTGCTGCAGCTGCTCACCCGCCCCGAGCTGGGACTCCTCGACCAG TACTGCCAGGGCTTCTGGCGACCGCCGGCCCCTGGCCCCCCCGAACCGCTGGCTGCCCTCAAAGCCAAGGAGCTGCAGG ACCAGAAGAAGCCAAGGAGCCGCCGGAATCACCCGCCAGAGAGCTGCGGGCACACATGA
Citation	Herzog Y, Guttmann-Raviv N, Neufeld G. Segregation of arterial and venous markers in subpopulations of blood islands before vessel formation. Dev Dyn. 2005 Apr;232(4):1047-55.
Copyright	Copyright © 2005 Wiley-Liss, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204258.1 ).