GEISHA - A Chicken Embryo Gene Expression Database
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SDC2
syndecan 2

Gene
Official SymbolSDC2
Official Full Namesyndecan 2
CGNC ID11946
also known assyndecan-2, syndecan-2|syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan), syndecan 2, heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001001462
PolypeptideNP_001001462
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4675
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6383ENSG00000169439MIM:142460
Mouse15529ENSMUSG00000022261All phenotypic alleles (1):Targeted, other(1) MGI:1349165
Xenopus549917, 379912, 3942836457627
Zebrafish282667ENSDARG00000002731ZDB-GENE-021206-3ZFIN:ZDB-GENE-021206-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene374102
Ensembl Gene
KEGGgga:374102
GEISHA IdSyndecan-2.Fukumoto.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGCGGTGCGTGTGGCTCGCGCTCACCCTCAGCTTCGTGGCCTGTGCCTCCGGGCAGCCGAGAGCAGATTTGACCTCTG
ATAAAGATTTATACCTGGACAACAGCTCTGTTGAAGAGGCATCGGGCGCCTATCCCATCGATGATGATGATTATTCTTC
TGGGTCGGGTTCAGGTGCTGAGGAAGATGAGGATAGCACAGTGACAACAACGTCCAGAATAGTTCCCAAGTTACCAACA
ACGAGTGATGCGTCTAGAGCTGAGACCACCACAGTGAAAATGCAGACCAAGATGCCTGCACAAACAAAGTCACCTGAAG
AAATCGATAAAGAGGAAAGACCTGAGGTGGATTCCAAGAAAAAGAGCAATGAGCCAGGGGATGACACTGATGTGTTCAC
TGAAAAGCATTCAGAAAACCTCTTCCAGAGGACAGAAGTTCTGGCAGCTGTTATTGCTGGCGGAGTTATTGGTTTTCTG
TTTGCAATCTTCCTCATCCTGCTGCTGGTATATCGCATGAGAAAGAAGGATGAAGGCAGTTACGACCTTGGTGAACGTA
AACCGTCTAGTGCTGCCTATCAGAAGGCACCTACTAAGGAGTTTTATGCATAA
CitationFukumoto T, Levin M. Asymmetric expression of Syndecan-2 in early chick embryogenesis. Gene Expr Patterns. 2005 Apr;5(4):525-8.
CopyrightReprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "The full-length sequence of cSyndecan-2 (606 bases) was amplified from RNA extracted from st. 23 chicken embryos, using primers cSyn2F (5'-ATGCGGTGCGTGTGGCTCGCGC-3') and cSyn2R (5'-TTATGCATAAAACTCCTTAGTAG-3') based on Gene Bank information (accession number: AF508229). This was cloned into the vector pBluescript SK(+). pBS-SK(+)–cSyndecan-2 was linearized using EcoRV (Takara) and transcribed with T3 polymerase to give a DIG-labeled antisense transcript." The sequence below was obtained using this information.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIV
Primitive Streak
 
1-3
stage 2
stage 3
Early Endoderm
Early Mesoderm
Primitive Streak
Mesendodermal Layer
4-6
stage 4
stage 5
stage 6
Hensen's Node
Notochord
Primitive Streak
Primitive Pit
7-12
stage 7
stage 8
stage 12
Lateral Plate Mesoderm
Mesoderm
Neural Plate/Tube
Notochord
Somites
Mesoderm Layer of the Neural Folds
13-18
stage 15
stage 18
Lens
Neural Plate/Tube
Notochord
Ventral part of the Neural Tube
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4675

Mouse

EmageMGI:1349165
EurexpressMGI:1349165
MGI GXDMGI:1349165

Frog

Xenbase6457627

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-021206-3
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