GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

LMO2
LIM domain only 2

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolLMO2
Official Full NameLIM domain only 2
CGNC ID201
also known asrhombotin-2, rhombotin-2|LIM domain only 2 (rhombotin-like 1), LMO2, rhombotin-like 1, LIM domain only 2
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204271
PolypeptideNP_989602
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.74
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human4005ENSG00000135363MIM:180385MIM:180385
Mouse16909ENSMUSG00000032698All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4) MGI:102811
Xenopus496679, 394388479143
Zebrafish30332ENSDARG00000095019ZDB-GENE-980526-419ZFIN:ZDB-GENE-980526-419
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene374129
Ensembl Gene
KEGGgga:374129

Entry 1

GEISHA IdLMO2.Ota.2007Data SourcePublication
Complete cDNA Template Probeshow
TCGCACCACAGGCACGCTACAAAGGAGCCATCCCTGCCAATGTCATCGGCCATCGAGAGGAAGAGCCTCGATCCTTCCG
AGGAGCCGGTGGATGAGGTGCTGCAGATCCCCCCCTCGCTGCTGACATGCGGGGGCTGCCAGCAGAACATCGGGGACCG
CTATTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTCAGCTGCGACCTGTGCGGCTGCCGGCTGGGAGAG
GTGGGGCGGCGGCTGTACTACAAGCTGGGCAGGAAGCTCTGCCGGAGGGACTATCTCAGGCTCTTTGGCCAAGATGGCC
TCTGTGCCTCCTGTGACAAACGGATCCGGGCTTATGAGATGACCATGCGGGTGAAGGACAAAGTGTATCACCTCGAATG
CTTCAAATGCGCGGCCTGCCAGAAACACTTCTGTGTTGGGGACAGATACCTCCTGATCAACTCGGACATAGTATGTGAA
CAGGACATCTATGAGTGGACTAAGATAAATGGAATGATATAGCAAAGAGGGGCTCATGATCTATAAAAAGACATCTCAC
GGGTGACGCAGACACGTAGCTGCAATGAGGAGATAACCACCTGAGCTATGTGCTTTGTCTAAAATAGGGGGGAAATACC
ACAGAGTAAGCCCTTTTCAGGCAGTGCTACGTAGAATCTAAACTACATATAAATGAAGAAGGGAGACTGAAGCAATAGT
AGATAGACTGACTTCGGCTAACAAAGGCGTATCGACAATAACTGACATCAGCCAGATAGGCAAGAGCTGGGGAGCAAAC
ACGATGTGATAACGAATGCTCATAACTGGGAAAACAGTAGTGACTTATGTAAAGAGATGTTATGACTTTGTCACCTGCA
GACTAGGATTGTGCAATTGACTTTTCTTTTCAACTTGTTTTAGTTACTCAGTCTAGACAACTGCTCCTAATGTAGACAT
GAAGAGG
CitationOta K, Nagai H, Sheng G. Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick. Gene Expr Patterns. 2007 Aug;7(7):761-6. Epub 2007 Jun 12.
Copyright"Reprinted from Gene Expression Patterns, Volume number 7, Ota K, Nagai H, Sheng G, Expression and hypoxic regulation of hif1alpha and hif2alpha during early blood and endothelial cell differentiation in chick,761-766. Copyright (2007), with permission from Elsevier". Copyright © (2007) Elsevier B.V. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-9
stage 9
Blood Islands
Blood Vessels
 

Entry 2

GEISHA IdLmo2.Minko.2003Data SourcePublication
Complete cDNA Template Probeshow
GGCAGATCGCACCACAGGCACGCTACAAAGGAGCCATCCCTGCCAATGTCATCGGCCATCGAGAGGAAGAGCCTCGATC
CTTCCGAGGAGCCGGTGGATGAGGTGCTGCAGATCCCCCCCTCGCTGCTGACATGCGGGGGCTGCCAGCAGAACATCGG
GGACCGCTATTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTCAGCTGCGACCTGTGCGGCTGCCGGCTG
GGAGAGGTGGGGCGGCGGCTGTACTACAAGCTGGGCAGGAAGCTCTGCCGGAGGGACTATCTCAGGCTCTTTGGCCAAG
ATGGCCTCTGTGCCTCCTGTGACAAACGGATCCGGGCTTATGAGATGACCATGCGGGTGAAGGACAAAGTGTATCACCT
CGAATGCTTCAAATGCGCGGCCTGCCAGAAACACTTCTGTGTTGGGGACAGATACCTCCTGATCAACTCGGACATAGTA
TGTGAACAGGACATCTATGAGTGGACTAAGATAAATGGAATGATATAGCAAAGAGGGGCTCATGATCTATAAAAAGACA
TCTCACGGGTGACGCAGACACGTAGCTGCAATGAGGAGATAACCACCTGAGCTATGTGCTTTGTCTAAAATAGGGGGGA
AATACCACAGAGTAAGCCCTTTTCAGGCAGTGCTACGTAGAATCTAAACTACATATAAATGAAGAAGGGAGACTGAAGC
AATAGTAGATAGACTGACTTCGGCTAACAAAGGCGTATCGACAATAACTGACATCAGCCAGATAGGCAAGAGCTGGGGA
GCAAACACGATGTGATAACGAATGCTCATAACTGGGAAAACAGTAGTGACTTATGTAAAGAGATGTTATGACTTTGTCA
CCTGCAGACTAGGATTGTGCAATTGACTTTTCTTTTCAACTTGTTTTAGTTACTCAGTCTAGACAACTGCTCCTAATGT
AGACATGAAGAGGAATACTGGTAAAAAAAAAGGGCCAGCCCCTTACGTGGTCATTTGATAAGGCCTTACGTTTTGGGTT
AGGAGAGAAAGGGGGAAGAGGGTGGGGGTTATTTTTTGCATGGATTCTTTTTGGGT
CitationMinko K, Bollerot K, Drevon C, Hallais MF, Jaffredo T. From mesoderm to blood islands: patterns of key molecules during yolk sac erythropoiesis. Gene Expr Patterns. 2003 Jun;3(3):261-72.
CopyrightReprinted from Gene Expression Patterns, Volume 3, Issue 3, K. Minko, K. Bollerot, C. Drevon, M.F. Hallais, and T. Jaffredo, From mesoderm to blood islands: patterns of key molecules during yolk sac erythropoiesis, Pages 261-272, Copyright 2003, with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204271).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 5
stage 5
stage 6
Blood Islands
Early Mesoderm
hemangioblasts
7-12
stage 8
stage 8
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
Blood Islands
Early Mesoderm
Extraembryonic
 
13-15
stage 13
stage 13
stage 13
stage 15
stage 15
stage 15
Blood Islands
Blood Vessels
Extraembryonic
 

Entry 3

GEISHA IdLmo2.Jaffredo.2005Data SourcePublication
Complete cDNA Template Probeshow
GGCAGATCGCACCACAGGCACGCTACAAAGGAGCCATCCCTGCCAATGTCATCGGCCATCGAGAGGAAGAGCCTCGATC
CTTCCGAGGAGCCGGTGGATGAGGTGCTGCAGATCCCCCCCTCGCTGCTGACATGCGGGGGCTGCCAGCAGAACATCGG
GGACCGCTATTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTCAGCTGCGACCTGTGCGGCTGCCGGCTG
GGAGAGGTGGGGCGGCGGCTGTACTACAAGCTGGGCAGGAAGCTCTGCCGGAGGGACTATCTCAGGCTCTTTGGCCAAG
ATGGCCTCTGTGCCTCCTGTGACAAACGGATCCGGGCTTATGAGATGACCATGCGGGTGAAGGACAAAGTGTATCACCT
CGAATGCTTCAAATGCGCGGCCTGCCAGAAACACTTCTGTGTTGGGGACAGATACCTCCTGATCAACTCGGACATAGTA
TGTGAACAGGACATCTATGAGTGGACTAAGATAAATGGAATGATATAGCAAAGAGGGGCTCATGATCTATAAAAAGACA
TCTCACGGGTGACGCAGACACGTAGCTGCAATGAGGAGATAACCACCTGAGCTATGTGCTTTGTCTAAAATAGGGGGGA
AATACCACAGAGTAAGCCCTTTTCAGGCAGTGCTACGTAGAATCTAAACTACATATAAATGAAGAAGGGAGACTGAAGC
AATAGTAGATAGACTGACTTCGGCTAACAAAGGCGTATCGACAATAACTGACATCAGCCAGATAGGCAAGAGCTGGGGA
GCAAACACGATGTGATAACGAATGCTCATAACTGGGAAAACAGTAGTGACTTATGTAAAGAGATGTTATGACTTTGTCA
CCTGCAGACTAGGATTGTGCAATTGACTTTTCTTTTCAACTTGTTTTAGTTACTCAGTCTAGACAACTGCTCCTAATGT
AGACATGAAGAGGAATACTGGTAAAAAAAAAGGGCCAGCCCCTTACGTGGTCATTTGATAAGGCCTTACGTTTTGGGTT
AGGAGAGAAAGGGGGAAGAGGGTGGGGGTTATTTTTTGCATGGATTCTTTTTGGGT
CitationJaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C (2005). Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells. Int J Dev Biol. 2005;49(2-3):269-77.
Copyright"Reprinted from Int. J. Dev. Biol., 49,Jaffredo T, Bollerot K, Sugiyama D, Gautier R, Drevon C , Tracing the hemangioblast during embryogenesis: developmental relationships between endothelial and hematopoietic cells, 269-77, Copyright (2005), with permission from Copyright © 2005 UBC Press". All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204271).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 9
Blood Islands
 
13-18
stage 17
stage 18
Aorta
Blood
 
31-44
stage 44
stage 44
Aorta
Blood Islands
Comparison with other genes

Entry 4

GEISHA IdLMO2.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
CCTCGATCCTTCCGAGGAGCCGGTGGATGAGGTGCTGCAGATCCCCCCCTCGCTGCTGACATGCGGGGGCTGCCAGCAG
AACATCGGGGACCGCTATTTCCTGAAGGCCATCGACCAGTACTGGCATGAGGACTGCCTCAGCTGCGACCTGTGCGGCT
GCCGGCTGGGAGAGGTGGGGCGGCGGCTGTACTACAAGCTGGGCAGGAAGCTCTGCCGGAGGGACTATCTCAGGCTCTT
TGGCCAAGATGGCCTCTGTGCCTCCTGTGACAAACGGATCCGGGCTTATGAGATGACCATGCGGGTGAAGGACAAAGTG
TATCACCTCGAATGCTTCAAATGCGCGGCCTGCCAGAAACACTTCTGTGTTGGGGACAGATACCTCCTGATCAACTCGG
ACATAGTATGTGAACAGGACATCTATGAGTGGACTAAGATAAATGGAATGATATAGCAAAGAGATGGCTCATGATCTAT
AAAAAGACATCTCACGGGTGACGCAGACACGTAGCTGCAATGAGGAGATAACCACCTGAGCTATGTGCTTTGTCTAAAA
TGGGGGGGAAATACCACAGAGTAAGCCCTTTTCAGGCAGTGCTACGTAGAATCTAAACTACATATAAATGAAGAAGGGA
GACTGAAGCAATAGTAGATAGACTGACTTCGGCTAACAAAGGCGTATCGACAATAACTGACATCAGCCAGATAGGCAAG
AGCTGGGGAGCAAACACGATGTGATAACGAATGCTCATAACTGGGAAAACAGTAGTGACTTATGTAAAGAGATGTTATG
ACTTTGTCACCTGCAGACTAGGATTGTGCAATTGACTTTTCTTTTCAACTTGTTTTAGTTACTCAGTCTAGA
CommentsImages and probe sequence provided by Claire Anderson. The probe was supplied by T Jaffredo. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
stage 12
Aorta
Blood Islands
Blood Vessels
Extraembryonic Blood Vessels
Outflow Tract
Pharynx
section 45
section 5
section 56

Entry 5

GEISHA IdLMO2.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
GGCGCGCGGGAGGAGCGCGGCGAGGATGGGAGGAGGAAATCCTGTGAATGTCATTGGGGGGCGGAGGGGGAGCGCGGCT
GGTGACAAGGCGTCGAGAGCGGACGGCCTCTGCGGGGGCAGCGGGGGCAGATCGCACCACAGGCACGCTACAAAGGAGC
CATCCCTGCCAATGTCATCGGCCATCGAGAGGAAGAGCCTCGATCCTTCCGAGGAGCCGGTGGATGAGGTGCTGCAGAT
CCCCCCCTCGCTGCTGACATGCGGGGGCTGCCAGCAGAACATCGGGGACCGCTATTTCCTGAAGGCCATCGACCAGTAC
TGGCATGAGGACTGCCTCAGCTGCGACCTGTGCGGCTGCCGGCTGGGAGAGGTGGGGCGGCGGCTGTACTACAAGCTGG
GCAGGAAGCTCTGCCGGAGGGACTATCTCAGGCTCTTTGGCCAAGATGGCCTCTGTGCCTCCTGTGACAAACGGATCCG
GGCTTATGAGATGACCATGCGGGTGAAGGACAAAGTGTATCACCTCGAATGCTTCAAATGCGCGGCCTGCCAGAAACAC
TTCTGTGTTGGGGACAGATACCTCCTGATCAACTCGGACATAGTATGTGAACAGGACATCTATGAGTGGACTAAGATAA
ATGGAATGATATAGCAAAGAGATGGCTCATGATCTATAAAAAGACATCTCACGGGTGACGCAGACACGTAGCTGCAATG
AGGAGATAACCACCTGAGCTATGTGCTTTGTCTAAAATGGGGGGGAAATACCACAGAGTAAGCCCTTTTCAGGCAGTGC
TACGTAGAATCTAAACTACATATAAATGAAGAAGGGAGACTGAAGCAATAGTAGATAGACTGACTTCGGCTAACAAAGG
CGTATCGACAATAACTGACATCAGCCAGATAGGCAAGAGCTGGGGAGCAAACACGATGTGATAACGAATGCTCATAACT
GGGAAAACAGTAGTGACTTATGTAAAGAGATGTTATGACTTTGTCACCTGCAGACTAGGATTGTGCAATTGACTTTTCT
TTTCAACTTGTTTTAGTTACTCAGTCTAGACAACTGCTCCTAATGTAGACATGAAGAGGAATACTGGTAAAAAAAAAGG
GCCAGCCCCTTACGTGGTCATTTGATAAGGCCTTACGTTTTGGGTTAGGAGAGAAAGGGGGAAGAGGGTGGGGGTTATT
TTTTGCATGGATTCTTTTTTTTTTTTTTTTTTCCTGTGAGAATGAAGAGTGCATCCTCTAGTCCCAAACTGTTCTTCAA
GGAAGTCCTGCTGAATAGCTGTTTTCAGGCACTACTGTTTCAAGATGAGATGTTCCATAGATCATTTCTATACAAATAT
AAATCTAAAGAGTTGTTCAACTATTTTATTAACTTAGATTATATCGATAAAATATTTGTTGTGTGTAGTAAGACTCTGC
AGCTTTAATAAAAATGACAGAAGATTTGAGTGTTA
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204271).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Proepicardium
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.74

Mouse

EmageMGI:102811
EurexpressMGI:102811
MGI GXDMGI:102811

Frog

Xenbase479143

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-419
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona