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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PAX3
paired box 3

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	PAX3
Official Full Name	paired box 3
CGNC ID	3903
also known as	paired box protein Pax-3\|Paired-box transcription factor protein PAX3\|paired box gene 3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204269
Polypeptide	NP_989600
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.69

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34629			FBgn0003145
Human	5077	ENSG00000135903	MIM:122880	MIM:606597
Mouse	18505	ENSMUSG00000004872	All phenotypic alleles (30):Spontaneous(5) Chemically induced(2) Radiation induced(6) Targeted, knock-out(2) Targeted, other(15)	MGI:97487
Xenopus	448464, 496376, 496377			482739
Zebrafish	30532, 100150137	ENSDARG00000010192, ENSDARG00000028348	ZDB-GENE-980526-52, ZDB-GENE-080917-53	ZFIN:ZDB-GENE-980526-52, ZFIN:ZDB-GENE-080917-53

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374127
Ensembl Gene
KEGG	gga:374127

Entry 1

GEISHA Id	Pax3.Jensen.2005	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Jensen A. Potential Roles for BMP and Pax Genes in the Development of Iris Smooth Muscle. Dev Dyn. 2005 Feb;232(2):385-92.
Copyright	Copyright © 2005 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204269 )

Stage

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Location (click to highlight)

Comments (click to highlight)

31-39

stage 31

stage 36

stage 39

Eye

developing iris smooth muscle cells

Entry 2

GEISHA Id	Pax3.Amthor.2006	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Amthor H, Otto A, Macharia R, McKinnell I, Patel K. Myostatin imposes reversible quiescence on embryonic muscle precursors. Dev Dyn. 2006 Mar;235(3):672-80.
Copyright	Copyright © 2006 Wiley-Liss, Inc.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Wing

25-26

stage 26

Wing

Entry 3

GEISHA Id	Pax3.Bothe.2006	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Bothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided to verify exact probe sequence. Sequence was obtained from NCBI (NM_204269).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-10

stage 10

Dermatome
Neural Crest
Neural Plate/Tube
Somites

Entry 4

GEISHA Id	Pax3.Ahmed.2006	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Ahmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

stage 24

Dermatome
Myotome

Dermomyotome not in vocab.

stage 25

Dermatome
Myotome

Dermomyotome not in vocab.

Entry 5

GEISHA Id	PAX3.Bothe.2007	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Neural Crest
Somites

Dermomyotome

13-18

stage 15

stage 18

Dermomyotome
Myotome
Paraxial Mesoderm
Somites

Dermomyotome
Dermomyotome, Migrating mesodermal cells.

19-24

stage 24

Dermomyotome
Myotome
Somites

Dermomyotome

Entry 6

GEISHA Id	PAX3.Lin.2007	Data Source	Publication
Complete cDNA Template Probe	show GCATCCGGCCCTGTGTCATCTCCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGA GACGGGATCCATCCGCCCGGGGGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATC GAGGAGTACAAGCGGGAGAACGCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACC GCAACACCGTGCCCTCAGTGAGCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGA GCTGGAGAGGAAGGAGGCGGAGGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCA GCAGCCCAGTCTGATGAAGGCTCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGA CAACCTTCACAGCAGAGCAACTGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGA AGAACTCGCACAAAGAGCCAAACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAG CAGGCAGGAGC
Citation	Lin J, Redies C, Luo J. Regionalized expression of ADAM13 during chicken embryonic development. Dev Dyn. 2007 Mar;236(3):862-70.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Sequence below was obtained from NCBI (NM_204269) using the primers given in the publication. The forward primer of Pax3 was 5'-GCATCCGGCCCTGTGTCATCTC-3', and the reverse primer was 5'-GCTCCTGCCTGCTTCCTCCATCT-3'.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Somites

13-18

stage 13

stage 17

Dermatome
Head Mesenchyme
Myotome
Neural Plate/Tube
Somites

Dermomyotome

25-30

stage 28

Wing Muscles

31-36

stage 36

Myotome

Muscles of the Thorax and the Abdominal Wall

Entry 7

GEISHA Id	Pax3.Stricker.2006	Data Source	Publication
Complete cDNA Template Probe	show AGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCTCCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTC CAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGGGGCCATCGGCGGCAGCAAACCCAAGCAGGTGACG ACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAACGCGGGGATGTTCAGCTGGGAGATCCGCGACAGGC TGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGAGCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGG GAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGAGGAAGGAGACAAGAAGGCGAAGCACAGCATCGAC GGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGCTCTGATATCGATTCTGAACCAGACTTACCCTTAA AAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAACTGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACA CTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAAACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGC AACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTGATGGCTTTTAACCACCTGATCCCAGGAGGGTTTC CACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGCCATCCTATCAGCCCACCTCCATACCGCAAGCCGT GTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCCAAGCACTGTACACCAAAGCAGCCTCCCTTCAAAC CCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGATTTTCCAGCTATACAGACAGCTTTGTGCCTCCGT CCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTTCACCTCAGGTAATGGGACTCTTGACTAACCATGG TGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTTGACTGGAGGTCTGGAGCCCACCACCACTGTCTCA GCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGCCTGCCTACATCACAGTCCTACTGCCCACCGACCT ATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGTATGGACAGTATGGACAAAGTGCCTTTCATTATCT GAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGCTGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGG ATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Stricker S, Brieske N, Haupt J, Mundlos S. Comparative expression pattern of Odd-skipped related genes Osr1 and Osr2 in chick embryonic development. Gene Expr Patterns. 2006 Oct;6(8):826-34. Epub 2006 Mar 22.
Copyright	Reprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
Comments	As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269.1) and was truncated based on this 5' primer CTTCTAGATIGTGGA(AG)ATGGC(ACGT)CA(CT)CA(CT)G.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

stage 24

Leg
Leg Mesenchyme

25-28

stage 26

stage 28

Leg Mesenchyme

Entry 8

GEISHA Id	Pax3.Cheng.2004	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Cheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69.
Copyright	Reprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	Authors said probe came from (Goulding et al., 1994) who indicate "a 182 bp fragment encompassing the homeobox and octapeptide sequences was used for Pax-3."As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204269.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

stage 7

Dermomyotome

En1:blue
Pax3:red
Shh:blue

Entry 9

GEISHA Id	Pax3.Reijntjes.2007	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Reijntjes S, Stricker S, Mankoo BS. A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo. Int J Dev Biol.(2007); 51(8:753-9.
Copyright	Reprinted from Int. J. Dev. Biol., 51, Reijntjes S, Stricker S, Mankoo BS, A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo, 753-9, Copyright © 2007 UBC Press, with permission. All rights reserved.
Comments	According to authors , "MyoD, Pax3 and Myf5 anti-sense probes were a kind gift of Philippa Francis-West.." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Limb Buds
Somites

25-30

stage 25

Dermomyotome
Eye
Leg Muscles
Limb Buds
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Wing Muscles

31-44

stage 44

Eye
Limb Buds
Paraxial Mesoderm
Somites

Fig. 2. All images for comparison.
Fig. 3. All images for comparison.

Entry 10

GEISHA Id	Pax3.Duprez.2002	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Duprez, D (2002). Signals regulating muscle formation in the limb during embryonic development. Int J Dev Biol. 2002;46(7):915-25.
Copyright	"Reprinted from Int. J. Dev. Biol., 46, Duprez, D, Signals regulating muscle formation in the limb during embryonic development, 915-25, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Leg Muscles
Myotome
Wing Muscles

25-30

stage 26

Wing Muscles

31-44

stage 44

Myotome
Wing Muscles

Entry 11

GEISHA Id	Pax3.Christ.2002	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Christ B, Brand-Saberi B. Limb muscle development. Int J Dev Biol. 2002;46(7):905-14.
Copyright	"Reprinted from Int. J. Dev. Biol., 46, Christ B, Brand-Saberi B, Limb muscle development, 905-14, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Dermomyotome
Limb Buds

19-24

stage 22

Limb Buds

Compare with other genes

31-44

stage 44

Leg Muscles
Somites
Wing Muscles

Compare with other genes

Entry 12

GEISHA Id	Pax3.Firnberg.2002	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Firnberg N, Neubüser A (2005).FGF signaling regulates expression of Tbx2, Erm, Pea3, and Pax3 in the early nasal region. Dev Biol. 2002 Jul 15;247(2):237-50.
Copyright	"Reprinted from Developmental Biology, 247(2), Firnberg N, Neubüser A, FGF signaling regulates expression of Tbx2, Erm, Pea3, and Pax3 in the early nasal region, 237-50., Copyright (2002), with permission from Elsevier". Copyright © (2002) Elsevier B.V. All rights reserved.
Comments	According to authors, "The plasmids used to prepare the antisense riboprobes employed in this study have previously been described: (Refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Head Mesenchyme
Surface Ectoderm

19-24

stage 24

Head Mesenchyme
Nasal Placode/Nerve
Surface Ectoderm

31-44

stage 44

Entry 13

GEISHA Id	PAX3.Gamer.2001	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Gamer LW, Cox KA, Small C, Rosen V (2001). Gdf11 is a negative regulator of chondrogenesis and myogenesis in the developing chick limb. Dev Biol. 2001 Jan 15;229(2):407-20.
Copyright	Copyright © 2000 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-28

stage 26

stage 28

Somites
Wing

Entry 14

GEISHA Id	PAX3.Amthor.2002b	Data Source	Publication
Complete cDNA Template Probe	show AGTGAGCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAG GCGGAGGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATG AAGGCTCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGA GCAACTGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGA GCCAAACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACC AACTGATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTC TGAGCCATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTC CCTCCAAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGC ATGGATTTTCCA
Citation	Amthor H, Christ B, Rashid-Doubell F, Kemp CF, Lang E, Patel K (2002). Follistatin regulates bone morphogenetic protein-7 (BMP-7) activity to stimulate embryonic muscle growth. Dev Biol. 2002 Mar 1;243(1):115-27
Copyright	"Reprinted from Developmental Biology, 243(1), Amthor H, Christ B, Rashid-Doubell F, Kemp CF, Lang E, Patel K, Follistatin regulates bone morphogenetic protein-7 (BMP-7) activity to stimulate embryonic muscle growth., Pages No., Copyright (2002), with permission from Elsevier". Copyright © (2002) Elsevier B.V. All rights reserved.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 28

stage 29

Somites
Wing Muscles

31-44

stage 44

Entry 15

GEISHA Id	PAX3.Huang.2003	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Huang R, Stolte D, Kurz H, Ehehalt F, Cann GM, Stockdale FE, Patel K, Christ B. Ventral axial organs regulate expression of myotomal Fgf-8 that influences rib development. Dev Biol. 2003 Mar 1;255(1):30-47.
Copyright	Copyright © 2003 Elsevier Science (USA) All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-20

stage 20

Somites

Entry 16

GEISHA Id	PAX3.Taneyhill.2005	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Taneyhill LA, Bronner-Fraser M. Dynamic alterations in gene expression after Wnt-mediated induction of avian neural crest. Mol Biol Cell. 2005 Nov;16(11):5283-93. Epub 2005 Aug 31.
Copyright	Copyright 2004, MBC Online by The American Society for Cell Biology.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-16

stage 16

Neural Crest
Neural Plate/Tube

Entry 17

GEISHA Id	PAX3.Basch.2006	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Basch ML, Bronner-Fraser M, García-Castro MI. Specification of the neural crest occurs during gastrulation and requires Pax7. Nature. 2006 May 11;441(7090):218-22.
Copyright	Copyright © 2006, Nature Publishing Group
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Early Embryo
Neural Plate/Tube
Primitive Streak

Entry 18

GEISHA Id	Pax3.McCabe.2008	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	McCabe KL, Bronner-Fraser M. Essential role for PDGF signaling in ophthalmic trigeminal placode induction. Development. 2008 May;135(10):1863-74. Epub 2008 Apr 16.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Bronner-Fraser.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 8

stage 10

stage 11

Lateral Plate Mesoderm
Neural Crest
Paraxial Mesoderm
Surface Ectoderm

Entry 19

GEISHA Id	PAX3.Sanders.2002	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Sanders TA, Lumsden A, Ragsdale CW. Arcuate plan of chick midbrain development. J Neurosci. 2002 Dec 15;22(24):10742-50.
Copyright	Copyright © 2002-2011 by the Society for Neuroscience
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-26

stage 26

Midbrain

Label shown is for 4 genes, including Pax3 laterally

Entry 20

GEISHA Id	PAX3.Berthoud.2004	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Berthoud VM, Singh R, Minogue PJ, Ragsdale CW, Beyer EC. Highly restricted pattern of connexin36 expression in chick somite development. Anat Embryol (Berl). 2004 Nov;209(1):11-8.
Copyright	© Springer-Verlag 2004
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Dermatome
Dermomyotome
Somites
Spinal Cord
Spinal Ganglia and Nerves

double labeled

25-29

stage 26

stage 29

Leg Mesenchyme

double labeled

Entry 21

GEISHA Id	PAX3.Merchan.2011	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Merchán,P, Bardet, SM, Puelles, L, Ferran, JL, Comparison of Pretectal Genoarchitectonic Pattern between Quail and Chicken Embryos. Front Neuroanat. 2011; 5: 23. Prepublished online 2010 December 29. Published online 2011 April 5
Copyright	Copyright © 2011 Merchán, Bardet, Puelles and Ferran.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204269.1 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-27

stage 26

stage 27

Midbrain

Quail

Entry 22

GEISHA Id	PAX3.Canning.2008	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Canning CA, Lee L, Luo SX, Graham A, Jones CM. Neural tube derived Wnt signals cooperate with FGF signaling in the formation and differentiation of the trigeminal placodes. Neural Dev. 2008 Dec 15;3:35.
Copyright	© 2008 Canning et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0),

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 8

stage 9

stage 10

stage 11

Neural Plate/Tube
Paraxial Mesoderm
Placode
Somites

Entry 23

GEISHA Id	PAX3.Moeller.2003	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Moeller C, Swindell EC, Kispert A, Eichele G Carboxypeptidase Z (CPZ) modulates Wnt signaling and regulates the development of skeletal elements in the chicken. Development. 2003 Nov;130(21):5103-11. Epub 2003 Aug 27
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-21

stage 21

Unlabeled

uninfected side (left) - control embryo
uninfected side - control embryo

Entry 24

GEISHA Id	PAX3.Bobak.2009	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Bobak N, Agoston Z, Schulte D. Evidence against involvement of Bmp receptor 1b signaling in fate specification of the chick mesencephalic alar plate at HH16. Neurosci Lett. 2009 Sep 25;461(3):223-8. Epub 2009 Jun 16
Copyright	Reprinted with permission from Elsevier. Copyright © 2009 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-16

stage 16

Midbrain

Entry 25

GEISHA Id	PAX3.Davey.2006	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Davey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 13651377.
Copyright	Copyright © 2006, Cold Spring Harbor Laboratory Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-20

stage 20

Myotome

Entry 26

GEISHA Id	PAX3.McCabe.2011	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Kathryn L. McCabe, Marianne Bronner. Tetraspanin, CD151, is required for maintenance of trigeminal placode identity. J Neurochem. 2011 April; 117(2): 221230.
Copyright	© 2011 The Authors. Journal of Neurochemistry © 2011 International Society for Neurochemistry
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204269.1 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-14

stage 14

Placode

Entry 27

GEISHA Id	PAX3.Alvarez.2003	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Alvares LE, Schubert FR, Thorpe C, Mootoosamy RC, Cheng L, Parkyn G, Lumsden A, Dietrich S. Intrinsic, Hox-dependent cues determine the fate of skeletal muscle precursors. Dev Cell. 2003 Sep;5(3):379-90.
Copyright	Copyright © 2012 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204269.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Central Nervous System
Somites

Entry 28

GEISHA Id	PAX3.Havis.2012	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Havis E, Coumailleau P, Bonnet A, Bismuth K, Bonnin MA, Johnson R, Fan CM, Relaix F, Shi DL, Duprez D. Sim2 prevents entry into the myogenic program by repressing MyoD transcription during limb embryonic myogenesis. Development. 2012 Jun;139(11):1910-20.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-22

stage 22

Limb Buds
Somites
Wing

cPAX3(blue)
cPAX3(brown)
dorsal and ventral view

Entry 29

GEISHA Id	PAX3.LIN.2012	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 24

Spinal Cord

Pax3: red
Pcdh18: green
Pcdh19: green
Pcdh8: green

25-30

stage 30

Myotome
Neural Plate/Tube
Spinal Cord
Spinal Ganglia and Nerves

Cervical section of the spine.
Lumbar section of the spine.
Sacral section of the spine.
Thoracic section of the spine.
ne, neuroepithelial layer

Entry 30

GEISHA Id	PAX3.Ferran.2007	Data Source	Publication
Complete cDNA Template Probe	show `TCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCCAA GCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGATT TTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTTCA CCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTTGA CTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGCCT GCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGTAT G`
Citation	Ferran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403.
Copyright	Copyright © 19992012 John Wiley & Sons, Inc. All Rights Reserved.
Comments	The sequence below was obtained from NCBI (acc #: NM_204269 - Showing 475 bp region from base 951 to 1425) using the information provided in the publication.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 17

Diencephalon

stage 25

Forebrain

Entry 31

GEISHA Id	PAX3.Reijntjes.2010	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Reijntjes S, Francis-West P, Mankoo BS. Retinoic acid is both necessary for and inhibits myogenic commitment and differentiation in the chick limb. Int J Dev Biol. 2010;54(1):125-34
Copyright	© 2009 UBC Press
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Limb Buds

G. Stage 22 embryo: normal expression

25-30

stage 25

Limb Buds
Somites
Spinal Cord

H. Untreated/Control embryo: Shows the normal expression of Pax3.
H. Untreated/Control embryo: Shows the normal expression of Pax3.

31-44

stage 44

Entry 32

GEISHA Id	Pax-3.Cauthen.2001	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Cauthen CA, Berdougo E, Sandler J, Burrus LW. Comparative analysis of the expression patterns of Wnts and Frizzleds during early myogenesis in chick embryos. Mech Dev. 2001 Jun;104(1-2):133-8.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Neural Plate/Tube
Somites

31-44

stage 44

Entry 33

GEISHA Id	Pax3.Rallis.2001	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Rallis C, Stamataki D, Pontikakis S, Mankoo BS, Karagogeos D. Isolation of the avian homologue of the homeobox gene Mox2 and analysis of its expression pattern in developing somites and limbs. Mech Dev. 2001 Jun;104(1-2):121-4.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

Dermomyotome
Neural Plate/Tube
Somites

dl, dorsal lip
vl, ventral lip

19-24

stage 21

Limb Buds

25-30

stage 26

Limb Buds

31-44

stage 44

Entry 34

GEISHA Id	Pax3.Delfini.2000	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Delfini MC, Duprez D. Paraxis is expressed in myoblasts during their migration and proliferation in the chick limb bud. Mech Dev. 2000 Sep;96(2):247-51.
Copyright	Copyright © 2000 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Neural Plate/Tube
Somites
Wing

19-24

stage 20

stage 21

stage 24

Limb Buds
Neural Plate/Tube
Somites
Wing

31-44

stage 44

Entry 35

GEISHA Id	Pax-3.Goulding.1994	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Goulding M, Lumsden A, Paquette AJ. Regulation of Pax-3 expression in the dermomyotome and its role in muscle development. Development. 1994 Apr;120(4):957-71.
Copyright	© 1994 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 13

stage 15

stage 18

Dermomyotome
Ear/Otic Placode
Hindbrain
Myotome
Neural Plate/Tube
Sclerotome
Somites

19-24

stage 19

stage 22

Leg Muscles
Limb Buds
Somites
Spinal Cord

25-30

stage 25

Leg Bones
Leg Muscles
Notochord
Vertebrae

31-44

stage 44

Entry 36

GEISHA Id	Pax-3.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Leg
Neural Plate/Tube

31-44

stage 44

Entry 37

GEISHA Id	Pax3.Otto.2006	Data Source	Publication
Complete cDNA Template Probe	show TCAGTGAGCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGG AGGCGGAGGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGA TGAAGGCTCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCA GAGCAACTGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAA GAGCCAAACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAA CCAACTGATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTC TCTGAGCCATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTC TCCCTCCAAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAG GCATGGATTTTCCA
Citation	Otto A, Schmidt C, Patel K. Pax3 and Pax7 expression and regulation in the avian embryo. Anat Embryol (Berl). 2006 Aug;211(4):293-310.
Copyright	Copyright © Springer-Verlag 2006
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Otto et al. 2006.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Unlabeled

7-12

stage 8

stage 9

stage 10

stage 12

Head Mesenchyme
Neural Plate/Tube
Somites
Tail

13-18

stage 16

stage 18

Cranial PNS
Hindbrain
Limb Buds
Midbrain
Nasal Placode/Nerve
Neural Plate/Tube
Somites

19-24

stage 23

Cranial PNS
Dermomyotome
Hindbrain
Limb Buds
Midbrain
Neural Plate/Tube
Somites
Spinal Ganglia and Nerves

25-30

stage 26

stage 29

Dermomyotome
Heart
Hindbrain
Hypaxial Muscles
Leg
Leg Muscles
Limb Buds
Midbrain
Somites
Spinal Ganglia and Nerves
Tail
Wing Muscles

31-44

stage 44

Entry 38

GEISHA Id	PAX3.Liem.1995	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAGCGCGCCGCGCCGCCGCGATGACCACGCTGGCCGGGGCCGTGCCCAGGATGATGCGGCCCGGAGCCGGGCAGAGCTA CCCGAGAGGAGGCTTCCCGTTGGAAGTCTCTACCCCTCTCGGCCAGGGCAGAGTCAATCAGCTCGGAGGAGTGTTCATC AACGGGCGGCCGCTGCCCAACCATATCCGCCACAAGATCGTGGAGATGGCGCACCACGGCATCCGGCCCTGTGTCATCT CCCGGCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTCTGCCGCTACCAGGAGACGGGATCCATCCGCCCGGG GGCCATCGGCGGCAGCAAACCCAAGCAGGTGACGACGCCGGACGTGGAGAAGAAAATCGAGGAGTACAAGCGGGAGAAC GCGGGGATGTTCAGCTGGGAGATCCGCGACAGGCTGCTCAAGGACGGCGTCTGCGACCGCAACACCGTGCCCTCAGTGA GCTCCATCAGCCGCATCCTGCGGAGCAAGTTCGGGAAAGGCGAGGAGGAGGAGGCCGAGCTGGAGAGGAAGGAGGCGGA GGAAGGAGACAAGAAGGCGAAGCACAGCATCGACGGCATCCTCAGCGAGAGAGCATCAGCAGCCCAGTCTGATGAAGGC TCTGATATCGATTCTGAACCAGACTTACCCTTAAAAAGAAAGCAGCGTCGCAGCAGGACAACCTTCACAGCAGAGCAAC TGGAAGAGCTGGAAAGAGCTTTTGAGAGGACACACTACCCTGACATTTATACTCGGGAAGAACTCGCACAAAGAGCCAA ACTCACGGAAGCTCGAGTTCAGGTTTGGTTTAGCAACCGCCGTGCTAGATGGAGGAAGCAGGCAGGAGCCAACCAACTG ATGGCTTTTAACCACCTGATCCCAGGAGGGTTTCCACCCAGCGCCATGCCGACTCTGCCGACATACCAGCTCTCTGAGC CATCCTATCAGCCCACCTCCATACCGCAAGCCGTGTCTGATCCAAGCAGTACAGTCCATAGACCTCAGCCTCTCCCTCC AAGCACTGTACACCAAAGCAGCCTCCCTTCAAACCCAGAGAGCAGCTCTGCCTATTGCCTACCCAGCACCAGGCATGGA TTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCCGGGCCCTCAAATCCCATGAACCCTGCCATTGGCAATGGCCTTT CACCTCAGGTAATGGGACTCTTGACTAACCATGGTGGTGTGCCTCACCAGCCCCAAACTGATTATGCCCTGTCCCCTTT GACTGGAGGTCTGGAGCCCACCACCACTGTCTCAGCCAGCTGCAGTCAGCGGCTAGATCACATGAAGAGTTTAGACAGC CTGCCTACATCACAGTCCTACTGCCCACCGACCTATAGCACCACCGGCTACAGCATGGACCCTGTCACCGGCTACCAGT ATGGACAGTATGGACAAAGTGCCTTTCATTATCTGAAGCCAGATATCGCATAAATGAACTGTCCACTTCAAGTTAAAGC TGGTGTTATTTTCCGGTCTCGCTCCAGAGCTTGGATACCAGGGGATCTTCTCAACACACTGCAGT
Citation	Liem Jr., K.F, Tremml G, Roelink H, Jessell T.M. Dorsal differentiation of neural plate cells induced by BMP-mediated signals from epidermal ectoderm. Cell. 1995; 82: 969-979.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204269.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-10

stage 10

Neural Plate/Tube
Paraxial Mesoderm

dorsal region of neural fold
dorsal region of the neural tube
lateral region of neutral plate
neural plate rostral to Hensen's node

all

Data from NCBI Unigene EST Profile
Unigene ID: Gga.69

Mouse

Emage	MGI:97487
Eurexpress	MGI:97487
MGI GXD	MGI:97487

Frog

Xenbase

482739

Fruit Fly

BDGP	FBgn0003145

Zebra Finch

ZEBrA

PAX3

Zebrafish

ZFIN	ZDB-GENE-980526-52, ZDB-GENE-080917-53

Home

Contact

PAX3paired box 3

Entry 1

Entry 2

Entry 3

Entry 4

Entry 5

Entry 6

Entry 7

Entry 8

Entry 9

Entry 10

Entry 11

Entry 12

Entry 13

Entry 14

Entry 15

Entry 16

Entry 17

Entry 18

Entry 19

Entry 20

Entry 21

Entry 22

Entry 23

Entry 24

Entry 25

Entry 26

Entry 27

Entry 28

Entry 29

Entry 30

Entry 31

Entry 32

Entry 33

Entry 34

Entry 35

Entry 36

Entry 37

Entry 38

Mouse

Frog

Fruit Fly

Zebra Finch

Zebrafish

PAX3
paired box 3