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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LIX1
limb and CNS expressed 1

Gene

Official Symbol	LIX1
Official Full Name	limb and CNS expressed 1
CGNC ID	49108
also known as	protein limb expression 1\|Lix1 homolog\|limb expression 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204347
Polypeptide	NP_989678
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.93

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	167410	ENSG00000145721		MIM:610466
Mouse	66643	ENSMUSG00000047786	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:1913893
Xenopus	100497418			976692
Zebrafish	558010	ENSDARG00000052154	ZDB-GENE-060526-123	ZFIN:ZDB-GENE-060526-123

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374264
Ensembl Gene
KEGG	gga:374264

Entry 1

GEISHA Id	LIX1.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show ATGGACAGAACCTTGGAATCTTTGCAGCTGGTGATTGCCCGAGTTCTGCCTCACAGAGACCCTGCCCTGGTGTTTAAGG ACTTGAATGTTGTAGCAATATTGCAAGAGTTCTGGGAAAGCAAACAGAAGAAGAAGGCCGTACTTCCAAGTGAAGGCAT CATTGTGTATGAGTCACTGAGCAGCCTGGGCCCACCATTTGTGAGTTATGTTACCTTGCCTGGAGGAAGTTGTTTCGGT AACTTTCAGAGCTGTTTAAGCAGAGCAGAGGCAAGGCGGGATGCTGCAAAAGTGGCTCTGATCAACTCTCTCTTTAATG AATTGCCCTGTCGCAGAATCACAAAGGAATTCATCATGGAAAGTGTTCAGGAGGCTGTTTCCTCAACAAGTGGCAACCT AAAGGATGCTGATGACCCCAGCACTAGTATTGGAGCTTATCATTATATGCTAGAATCAAACATTGGAAAGACAATGCTG GAATTTCAGGAGCTGATGATTGTCTTTCAGCTTCTGCATTGGAATGGAAGCCTTAAAGCTCTACGGGAAACAAAGTGCT CCCGGCAGGAAGTAATTTCCTACTACTCCCAGTGTTCCTTAGATGAAAAGATGAGAAGTCACATGGCCCTGGACTGGAT TATGAAGGAGCAAGAATCTCCAGGAATTATTTCCCAAGAGCTGCAAGTGGCACTGAGGGAACTGGAAGAAGTCAGGAAA GCTGGGCATGAACTGAGGTTCTACAAAGAGAAGAAGGAAATACTGAGCTTAGCACTGAGTCAGATCTACAGTGATGAAG TTACCACTTCCTCATGGGACAATCAAATGAGCTTGGCCCTACATGGCTANCGCTAA
Comments	Images and probe sequence provided by Claire Anderson. The probe was supplied by Sandrine Faure. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Somites
Splanchnic Mesoderm

HH12+

Entry 2

GEISHA Id	LIX1.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GTTCCGAAGAAGGAAGCCGCGCACCGAGCGTGCCAGCCTGCTTTGCTGTTCCTTAGCGCAGCGCAGGGGGAGGTGGGCC CTTGGAGTGCCTTGGAGTTTGAGGCAGTGCCTGATTGGGAGACGAGGGGATATTCCTCAGGAGCCCGGTGCATCAATGA ACTGCTGCAGGAAGGCAGTGCGGGGCTCGGCTCGCTCGGGCATGAGGACAGCTGGTGGCCGCTGTCTGGTAAAGCAGGA CGGAGATGGACAGAACCCTGGAGTCTTTGCAGCTGGTGATTGCCCGAGTTCTGCCTCACAGAGACCCTGCCCTGGTGTT TAAGGACTTGAATGTTGTAGCAATATTGCAAGAGTTCTGGGAAAGCAAACAGAAGAAGAAGGCCGTACTTCCAAGTGAA GGCATCATTGTGTATGAGTCACTGAGCAGCCTGGGCCCACCATTTGTGAGTTATGTTACCTTGCCTGGAGGAAGTTGTT TCGGTAACTTTCAGAGCTGTTTAAGCAGAGCAGAGGCAAGGCGGGATGCTGCAAAAGTGGCTCTGATCAACTCTCTCTT TAATGAATTGCCCTGTCGCAGAATCACAAAGGAATTCATCATGGAAAGTGTTCAGGAGGCTGTTTCCTCAACAAGTGGC AACCTAAAGGATGCTGATGACCCCAGCACTAGTATTGGAGCTTATCATTATATGCTAGAATCAAACATTGGAAAGACAA TGCTGGAATTTCAGGAGCTGATGATTGTCTTTCAGCTTCTGCATTGGAATGGAAGCCTTAAAGCTCTACGGGAAACAAA GTGCTCCCGGCAGGAAGTAATTTCCTACTACTCCCAGTGTTCCTTAGATGAAAAGATGAGAAGTCACATGGCCCTGGAC TGGATTATGAAGGAGCAAGAATCTCCAGGAATTATTTCCCAAGAGCTGCAAGTGGCACTGAGGGAACTGGAAGAAGTCA GGAAAGCTGGGCATGAACTGAGGTTCTACAAAGAGAAGAAGGAAATACTGAGCTTAGCACTGAGTCAGATCTACAGTGA TGAAGTTACCACTTCCTCATGGGACAATCAAATGAGCTTGGCCCTACATGGCTACCGCTAACTTTGAAGAAGGCGTTTT AACATGCCAGTGTAGGTTAAAAATAGTCTCCATGTAAGTTGTTAGTATTCTTTTCCATAGATGTTTTAATTTCTGTATC TAAAAGCACAGATGTCTTTCTTTTTTAAAAAATAATTTTTATTTCAGTGGCTAGAAATACTCTTCAGGTCAAGCTGCAG CTGTCATGAAACATTTGATGTAGCGCTGGTACTAAAGTATGTGTAAACCTAAATGGAGACAAAGCAGAGAAAGCTTTTA TGGTACTCTGAAGGTTGAACTTGATGTGGTACTTGATTTCCACATGAAAACTACACCTTTGCTGAAGACATAAAAATTG TTGTCACAAACCTACAGAGTGCAAGCAGTAAAAGACAAAAAGGGTAGTTCTAAGCTGCACTGGTGCCTGCTTACTCCCA GACTTCTTGACAGCATATGTTTCCTCCGATCAGGTGCTATTGCTGAAGTTCGTTGTATTTTTTTGAAGGATATAAGGAA CCTTTCAAGCAAAAAAAACCTGCAGCATTAAACTAGTACTCCAGATTCAAGGTGCTTTACCCCTGTTGCAGCCAAGATT TCACAAACCTATGCAAAGATAAAGATGAGCAGAAGTTACTCACTGGCCATGCTCTGTCCAGTATGGCTAACAGATTCTG TGTGATAAAAATCTTCTAGTTAGACTTTATGTACCTTTTCAAAGAGGATTTACTTGCTTGCACTTCAGCAAATGCCTGC TGAGGTTCAAGATCTTTCCCTTCCCCATGCTGACTGTCAGCACAATTCCACTACTAGAAGCTGCTGTCCCTAGGGCAAA GTCAGCAGCATAAGCCTGCATGAGGCACACACTCATAATAACCAGCATGCCATTTTAGCTGATGATGACAGCAGGAAGG TGCTAAGATGCTGGTCAATGAACTTAAATGCACTTCTCCGTAGTTCTGTTTCCTGCTAGTTTCTGCCAGAAGAATGAAC ACCTAGCATAGCCACAGTTTAAATCAACTCAGTAACCTCAGTAGTATCTCTTAGCATCAGTACAATTTGCTTTAAACAT AAAAGAGCAAATTCTACGTAAAAGAGACAAACAGTTCAGTTGGAGGAAAAGCAGGCTGGGGAGAATTTATTTTCATCCC TTGCACAAGTGGATACCCAACAATGTCACATCTCATATAAAAAAGACAGGAGAATAGGTCAGCAGTAATAATTGTGTTG CAAAACCACACACACCACTGCTAGAGGGAGTTCCCTGGAGTGCCTTACGAGAGAAAACTCTCATTTTTTATCTCCTTTC AGTCGTTCATTTAAAAAATGTACGAAGCTGTATGGCTCTGTTACTCAAAAATTTGTTTTCTTAACTGAAAGAGAAAAAT TTTCCTAGCTTTTAATGTTTAGTTTTCTTTCAGGGCGTTTCAAATGTATAACAATAAAGTGAAAGTAATTTTCACACTG CATCAATAGATTGTACATACTCCCGTGTGCATTTAGGTTGTGTAATTTAGGCAGTGGTTTGCTTCCCATCAATGTAGTA TGTAAACTGTTTAAAACAGTAGGTTATAGAAAAAGTACTGGAAAAACTTGGATTGCTTTGATTTTTGTTTGGTGATCCG ATGAAGAAATAAACAATCACACTCCCGTGGACTGA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204347.2 ).