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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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GABPA
GA binding protein transcription factor subunit alpha

Gene

Official Symbol	GABPA
Official Full Name	GA binding protein transcription factor subunit alpha
BirdBase ID	BB-GG3869
CGNC ID	11756
also known as	GA-binding protein alpha chain\|GA binding protein transcription factor alpha subunit\|GA binding protein transcription factor, alpha subunit 60kDa\|human nuclear respiratory factor-2 subunit alpha
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001007858
Polypeptide	NP_001007859
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.18967

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43236			FBgn0004510
Human	2551	ENSG00000154727		MIM:600609
Mouse	14390	ENSMUSG00000008976	All phenotypic alleles (8):Targeted, knock-out(3) Targeted, other(3) Gene trapped(2)	MGI:95610
Xenopus	100126064, 446729			987249
Zebrafish	58110	ENSDARG00000069289	ZDB-GENE-011010-2	ZFIN:ZDB-GENE-011010-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418478
Ensembl Gene	ENSGALG00000015763
KEGG	gga:418478

GEISHA Id	ChEST505i18	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGCGGCTCGAGTACAATTTGAAGTATGGGTGATGAATAGAAATAGTTGGAATATATTTTGAATTTTGAGAGACTGGTAT AGAGAGAACTTCATACAAAAGTGCAGTAAACAGTAGACTGCAATGTTTGAGCTTCTACACTTACAACTATTTCTTTTGA TGTCTGAAAATAGTATGGTTTTAGTTCTGCCCTTGTGTTATTAAACATTGTAGTTGTTATAAAGCATATGTCCCAACTT TTTATAACTGAACACCCTGCTGCCACTAACATTTCACAGTTAATTAAAATGCAGATGGTTAAGGGAGAGCCTTTAATTC AGCTACCCTTAAACCTTAAATAAAAAGTGCTTGTACAGAGACTGTCTAAGCATAAAATGTTATTACACAGTGAGTAGTG AGAATACTGGGTTGTTGTTCTTAGGCTGAAAAGGAGTGGTCTTACTGGTAGTCAGAGGGCAGAAAACACAGAATATTCA TCTTTATTTTAAAGATGCGTTAAGGAGAAAGCTGTTTGCTTTATAGGCGTGTATTCATTTGCAGACGGATTTTCATTAA TTAAAACCCTTGCATGCATTTCTAGCTTACCTTTTTAATTACCTCAATAACTGTAACACTTTCTTGACAGATCCTTTCA TCAACTCTTAATATTATTTTCATTCTTGGGTGCTTACAGTACTTCATCAACTAAACATGTTGGCTTTCTTTTTCTTTAA TGAAATCTAAGCCATGAGCAAGGTATGTGTCTGTCACAAGAAGTCAACCATCAATCCACTTCTTGCTGTTAAAATAGTC CAACTCCAGCAATTGGCAAATGCTTGAGGTGACTTANGCAAATANGTGTAGATTTGCTTACTAAGAGTAAGGTGAAGCT GATAGTTCAGTGGCAGCAACTATGTATATAACATCATGCCTTTTACTAACAGAAGTCCAATTACAGTCCCTAGGTTCTA TTAGCAAAGTTCATGAAAAACCTTTTTGTCAAATACCAAAAAGGAGTTTAAAAAAAAAATAT
Comments	No specific expression detected at stages 3-10.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Area Pellucida
Primitive Streak

7-12

stage 7

stage 9

stage 10

stage 11

Anterior Intestinal Portal
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Headfold
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Primitive Streak
Somites

faint
very faint expression

13-18

stage 14

stage 15

Forebrain
Foregut
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sinus Venosus
Somites
Spinal Ganglia and Nerves

19-24

stage 19

stage 20

stage 20

stage 20

stage 20

stage 20

stage 20

stage 21

stage 21

stage 22

stage 22

Allantois
Eye
Forebrain
Foregut
Heart
Hindbrain
Leg Mesenchyme
Limb Buds
Mesoderm
Midbrain
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Wing Mesenchyme

25

stage 25

stage 25

stage 25

Eye
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Liver
Lung
Midbrain
Sclerotome
Spinal Cord
Trunk Mesenchyme
Wing Mesenchyme

Data from NCBI Unigene EST Profile
Unigene ID: Gga.18967

Mouse

Emage	MGI:95610
Eurexpress	MGI:95610
MGI GXD	MGI:95610

Frog

Xenbase

Fruit Fly

BDGP	FBgn0004510

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-011010-2

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