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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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STRA6
stimulated by retinoic acid 6

The human orthologue of this gene is associated
with the following human disease:

Microphthalmia, syndromic 9

Gene

Official Symbol	STRA6
Official Full Name	stimulated by retinoic acid 6
CGNC ID	1001
also known as	receptor for retinol uptake STRA6\|stimulated by retinoic acid gene 6 homolog
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_413689
Polypeptide	XP_413689
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7473

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64220	ENSG00000137868	MIM:601186	MIM:610745
Mouse	20897	ENSMUSG00000032327	All phenotypic alleles (2):Targeted, other(2)	MGI:107742
Xenopus	100124902			1002041
Zebrafish	724007	ENSDARG00000051874	ZDB-GENE-060616-252	ZFIN:ZDB-GENE-060616-252

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	415301
Ensembl Gene	ENSGALG00000001449
KEGG	gga:415301

Entry 1

GEISHA Id	STRA6.Reijntjes.2010	Data Source	Publication
Complete cDNA Template Probe	show `CGAGCTCTCTACATCGTCACCTATCTACTGTTTCCCATCAATGTGTTGGTGGGGGTCCTGGCGGGGGTCTGGAGGATGG TTATCTCTGCCCTCTACAACGCCATCCACTTCTGCCAGTTGGACATCAGCTTACTGAACCGTGGTGTGGAGACTTTTGA CCCAGGCTACCACGCATACTGCCACTACCTGAAGACGGAGGTCAGCCAGTCGCACCCACTGATGAGAGCCTTCTGCCTG CTGCTCCTCCAGCCCACGAAGCCACAGGGCCCACCTGAGCCCCGGATGGGGGACCTGGAAGAAGGCCTCCAGCTGATGC ACACCAAGAAGGCACCATCAGGTGGGGGCCGACTGAAGCGGAGCCGGGCACGCTGGTGGTTGGCCTACACCCTCCTCAA CAA`
Citation	Reijntjes S, Zile MH, Maden M. The expression of Stra6 and Rdh10 in the avian embryo and their contribution to the generation of retinoid signatures. Int J Dev Biol. 2010;54(8-9):1267-75.
Copyright	© 2010 UBC Press
Comments	The cDNA template used to generate the probe was obtained by PCR as described in Reijntjes et al. Fig. 2. (L&N) Show expression of STRA6 in a stage 10 & stage 14 quail embryo.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Early Mesoderm
Epiblast
Hensen's Node
Neural Plate/Tube

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Central Nervous System
Hensen's Node
Neural Plate/Tube
Notochord
Primitive Streak
Sclerotome
Somites
Unlabeled

in situ in a stage 10 quail embryo

13-18

stage 13

stage 14

stage 16

stage 18

Hindbrain
Hindgut
Mesonephros
Retina
Rhombomeres
Somites

coelomic epithelium
in situ in a stage 14 quail embryo

19-23

stage 19

stage 21

stage 23

Diencephalon
Eye
Hindbrain
Limb Buds
Mesonephros
Neural Plate/Tube
Retina
Somites

neural tube roof plate

Entry 2

GEISHA Id	STRA6.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GCCGGTGCGCTGAACTTTGTCTGCGGGATTGCATGGCTGCCGCCGCGCCGTGCTGATGCTCTGAGCCCTGCACAGCCGT GTCCGTCCTCCAGCCGAGCCACAGGTCGGGAGCAGGAAGAAGGCGCTCATGGCAGCCAACAACTCCGGGGCCGCGCACG GCTCGCTGCTGGATGACAGCTTTGGGGATGACCTGCTGTCCGACTGGTACATCTATGAGACAGCAGAGCCAGCTGCACC GCAGGATGACATGTTTCCCAGCACCATCCCAGAATGTGACCCCACCGTTTCCCCCAGGCTGTACCACACCTGTATGGCA CCCATCTCCCTGGCCGTGCTGCTGGGCTTGTCCTTGCTGGTGAAACGCAGGCATCTCCACCGGGACTGCTGGAACGGCA TCCCTGGGCTGCTCAGCCCAGCTAACTTCCTGGAGGAGGAGGGCAACAGAGGGCTGATGGCCGCGGTGTTCGGCATCCT CTTCTCCTCACTGTGTGTGCTGGTGCTGGACGCCGACCCTCTGCCTCTCATCACCCACTCCTCCCAGCACAGCCGGGAG TACTGGAAGATCCTGGCTTTGCTCTACTACCCCGCCTTCTACTACCCCTTGGCCGCCTGCGCCACGGTGGGGCACAGGG CCAGCTACCTGCTGGGCTGCCTGCTCTCCTGGTGCCACTGCGTGGTCCATGTCTGGCAGAAGGTGGACTGCCCCCAGTC GCCAAAGATATATAGGTATTACTCCATGCTCTCTTATGTCCCCATCATCCTCTGCCTCGTGGTCTTAAGTCTGTGGTAC CCAGCCCTGCTGATCAGGAGCTTCACAGAGAAGGAGGAGACCTCAAACAAGGAGGTTACAGGGAGAGGCTATTACAAGA AGTACCTCAAGGCTGTGCTGTCCAGGCGGCTGCAGAAGGGGAGCACCCCAAAGCTGGAGGAGAGCCTCGTGTCCCGGCT CCGTGCCTACCTGTGCTCCTACATCTATGCTCCAGAGGAAGGTTTCCAGCTGCCGCTGAAGCTCGTCCTGTCCATGACC ACATCAGTCATTGCTGTCTACCAGGTGGCCCTGCTGCTGCTGGTGGCCTTCGTCCCCACCATCCAAATCGTGCGAGCAG GCATGACGAAGGACGTGGTGGTGCTGCTGGTGCAGTTCGGGCTGGTGCCCTCAGAGAACCCGGGCATGCCAGGGGACAT GGAGAAGGAGCTCAGCACTGTCAAGCACTACCTGTGGTCGCTGGAAGTGTGCTACGTGTGCTCGCTGGTGCTGTGCTGC CTGCTGACCCTCGCCATGCTGCTGAGGACACTGGTGATGCACAGGAGCAACCTGAAGGCGCTGTACCAAGGGGCTGTGC TCGATGTCTTCTACAAAGCCCACATCCTCCGCCCATCCCGACAAGCCATCGTCTGCTGGATGAGCTTCGCCAGCTTCCA GACAGCTTTTGCCTGCCTGGGTCTCCTCATCCAGCAAGTGATTTTCTTCATCTGCTTTGCTGCCTTCACCTTCCTTGTC GTCATCCCGCTGCAGTCTGGCACAAGCTCATACCTCTTCAAAGTCGTGCGGAACATGTGGCCCTTCTGGCTGACCCTGG TGGTGGCTGTCATCGTGCAGAACGTGGCAGCTCACTACCAGTTCCTGGAGCAGCATCCCCTGCGGAAAGAGCTGACCAA CAGACGAGCTCTCTACATCGTCACCTATCTGCTGTTTCCCATCAATGTGTTGGTGGGGGTCCTGGCGGGGGTCTGGAGG ATGGTTATCTCTGCCCTCTACAACGCCATCCACTTCTGCCAGTTGGACATCAGCTTACTGAACCGTGGTGTGGAGACTT TTGACCCAGGCTACCACGCATACTGCCACTACCTGAAGACAGAGGTCAGCCAGTCGCACCCACTGATGAGAGCCTTCTG CCTGCTGCTCCTCCAGCCCACGAAGCCACAGGGCCCACCTGAGCCCCGGATGGGGGACCTGGAAGAAGGCCTCCAGCTG ATGCACACCAAGAAGGCACCATCAGGCGGGGGCCGACTGAAGCGGAGCCGGGCACGCTGGTGGTTGGCCTACACCCTCC TCAACAACCCCTCGCTGATGGGCTGCCGAAAAACCGCCCTCTGCGACCCCACAGCCAACGGGGCCCAGCTCAGCCCCCC CAGGCCCTGACCTCCGCCCCCTGCCTCTTCCCTCCCATCCCATCCCGCCTCCCATTGACTTTCCTCCCATGATGGAAGG AGGTTGGGCGCTCCTGTCCCTCTCCAGCAGTGACAGCACTGGTTTGTAGCTCTGGGGCCATGTGGGATGCAGAGGTGAT GACACAGCCAAGGCACACGGGTCTAAGCCCGAGCTGGGAGGAGAGGCTCGGTGAGCCAAGCCAGACCCTTCAGCCATCC CAAAAGTCCTCTTAGGGTCACTTCTGAGATAAGTCCACCGAGGTCCCCTCCACCAGCACCATCCCTACCATCCTCATGG GTCTTTTCCCATTTCACATGCTCTGTTTTAGGCTGGGAGGTTGCAAAACAGTTCATTTGGGGCTCCCGTAGCTCTCATC CTCCAGTTTACCCTACTGGGGCTGTTTCCTCCCCTGCTGCTGCCCCTTTGTGCTCAAAGTTAGCTGTTCTCCAGGACCA GCCAGCCCCAAGCCCATAGAGCAGCATCATGCCTCCTTGGGCCGTGCCGAGCTGGGGAAGAACAATAAATCATATACCT CATTGCTA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001293202 ).