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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BMI1
BMI1 proto-oncogene, polycomb ring finger

Gene

Official Symbol	BMI1
Official Full Name	BMI1 proto-oncogene, polycomb ring finger
CGNC ID	54322
also known as	polycomb complex protein BMI-1\|B lymphoma Mo-MLV insertion region\|BMI1 polycomb ring finger oncogene\|polycomb group RING finger protein 4
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001007988
Polypeptide	NP_001007989
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22845

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function	zinc ion binding
Biological Process	chromatin modification, negative regulation of apoptotic signaling pathway, more...
Cellular Component	PcG protein complex, ubiquitin ligase complex

Links to other databases

Entrez Gene	493647
Ensembl Gene
KEGG	gga:493647

Entry 1

GEISHA Id	BMI1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGGCTCTAATGAAGACAGGGGAG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTGCTGGAGATGTGTGGGAACTG	cDNA Template Length	551
Forward cDNA Template Probe	show CAGNGGGGGGGATGGNACGGCGTGCTGGGGCTGGGCAGGCAGGAGGAGGTGGAGGGCAGCCCCCCGGCCGGGCTGCTGG CCTTGTCGCTGCCGGAGTCGCTCTCCAGCTCGCCGCTGTTGCTGAGGCCTTCCCGCTGGTGGCCGATCTTCATCCTCTT GCAGGTGGGCCGCACGCGGTACTTGAGGGGCAGCGGGCCGTTCCGTCTCCAGGTGTAGATGTAGGCAATGTCCATCAGC GTGTAGTAGTCCTTCAGGGGCTCCTCCTCGTACATCACGTCGATCTGGAAAGTGTTGGGGATATCCATCTTACTCCGCA GGAACTTTCGTAGATGCATCACTGTCATCGCTGCCGGGCAGCGCAAATATCTTTTGTCGTTCACCTCCTCCTTCGACTT TTCTTTCTCTTTATTTCCTTTTCGTTCCAGTCTGTTCTGGTCAAAGAACTCAATGGATAAGCTTATTATCTCGTCGTCT GTTATAATTCTTTTGTCTTCGTCAGCCACTTCTCCCCTGTCTTCATTTAGAGCCAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Unlabeled

7-12

stage 8

stage 10

stage 11

Amnion
Anterior Intestinal Portal
Area Opaca
Blood Islands
Eye
Forebrain
Head Mesenchyme
Heart
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
Sinus Venosus
Somites

13-18

stage 18

Dermatome
Eye
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome

19-24

stage 19

stage 22

Dermatome
Eye
Foregut
Head Mesenchyme
Lung
Mesonephros
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome

25-26

stage 26

Foregut
Head Mesenchyme
Sclerotome

Entry 2

GEISHA Id	BMI1.Fraser.2004	Data Source	Publication
Complete cDNA Template Probe	show ATGCACCGGACGACCAGGATCAAAATCACCGAGCTGAACCCGCACCTCATGTGCGTGCTGTGCGGCGGGTACTTCATCG ACGCGACGACCATCATCGAGTGCCTGCACTCCTTCTGCAAGACGTGCATCGTGCGGTACTTGGAGACGAGCAAGTACTG CCCGATCTGCGACGTCCAAGTGCACAAAACCCGGCCGCTGCTCAACATCAGGTCAGATAAAACTCTCCAGGATATCGTG TACAAGCTCGTACCGGGCCTTTTCAAAAATGAAATGAAAAGAAGAAGGGATTTCTATGCTGCTCATCCGTCGGCTGATG CTGCCAATGGCTCTAATGAAGACAGGGGAGAAGTGGCTGACGAAGACAAAAGAATTATAACAGACGACGAGATAATAAG CTTATCCATTGAGTTCTTTGACCAGAACAGACTGGAACGAAAAGGAAATAAAGAGAAAGAAAAGTCGAAGGAGGAGGTG AACGACAAAAGATATTTGCGCTGCCCGGCAGCGATGACAGTGATGCATCTACGAAAGTTCCTGCGGAGTAAGATGGATA TCCCCAACACTTTCCAGATCGACGTGATGTACGAGGAGGAGCCCCTGAAGGACTACTACACGCTGATGGACATTGCCTA CATCTACACCTGGAGACGGAACGGCCCGCTGCCCCTCAAGTACCGCGTGCGGCCCACCTGCAAGAGGATGAAGATCGGC CACCAGCGGGAAGGCCTCAGCAACAGCGGCGAGCTGGAGAGCGACTCCGGCAGCGACAAGGCCAGCAGCCCGGCCGGGG GGCTGCCCTCCACCTCCTCCTGCCTGCCCAGCCCCAGCACGCCGGTCCAGTCCCCCCACCCGCAGTTCCCACACATCTC CAGCACCATGAACGGCACCAGCAGCAGCCCCGGCAGCAACCACCAGTCCTCCTTCACCAACAGAGCACGGAAATCCTCC ATAAACGGCTCCTCAGCCACTTCGTCCGGCTGA
Citation	Fraser PE, Sauka-Spengler T. GExpression of the polycomb group gene bmi-1 in the early chick embryo. Gene Expr Patterns. 2004 Nov;5(1):23-7.
Copyright	Reprinted from Gene Expr Patterns, Volume 5(1), Fraser PE, Sauka-Spengler T, Expression of the polycomb group gene bmi-1 in the early chick embryo, Pages 23-7, Copyright (2004), with permission from Elsevier". Copyright © 2004 Published by Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AY616032)."

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Area Pellucida
Epiblast
Neural Plate/Tube

7-12

stage 7

stage 8

stage 9

stage 10

stage 12

Ear/Otic Placcode
Epiblast
Nasal Placcode/Nerve
Neural Plate/Tube
Splanchnic Mesoderm

Precardiac Mesoderm
Splanchnic Mesoderm

13-18

stage 15

Central Nervous System
Ear/Otic Placcode
Eye
Lens
Nasal Placcode/Nerve
Neural Plate/Tube

Trigeminal Placode

19-23

stage 19

stage 23

Dermomyotome
Diencephalon
Ear/Otic Placcode
Eye
Hindbrain
Nasal Placcode/Nerve
Neural Plate/Tube
Pharyngeal Arches and Clefts

Entry 3

GEISHA Id	BMI1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AGTTTCCAGTGTGTGCCTTCAGCCTCGCGTTTTTCCCTCCTCCGCCCTCCCTCCCCCGTCCCCCCGCCACCAACTATGA AATAATCATAATAAAAAAAAAAGAAAAAAAACGGCGAGCGGGCGGCGGAGCGGGGGGGAGCGGGCGAGACAATGGGCCG GAGCGGGCGGCCCCCGGCCGGCTGAGCCCGGCGCGGCCCCGCGCGGCGCCGAGGGAGCGCCGAGGGTCGGCGGAGCGGC GCGGACACGGCGGTCCCGCGGGCGGCATGAGCGGAGCGCCGCGGCGGCGGCGTTGGTGCGCTCCTCGCGATTGACAGCG TCTGCAGTTCATTTCAAGATGGCCGCTTGGCTCACATTCATTTTCTGCTGAACGACTTTTAACTTTCATTGTCTTTTTC GGCCGCCCCGATCGTCGCCCGCCGGCTCCCTTTTCCGGAGCCGCCTCGCCCCGCGCCAAAATGCACCGGACGACCAGGA TCAAAATCACCGAGCTGAACCCGCACCTCATGTGCGTGCTGTGCGGCGGGTACTTCATCGACGCGACGACCATCATCGA GTGCCTGCACTCCTTCTGCAAGACGTGCATCGTGCGGTACTTGGAGACGAGCAAGTACTGCCCGATCTGCGACGTCCAA GTGCACAAAACCCGGCCGCTGCTCAACATCAGGTCAGATAAAACTCTCCAGGATATCGTGTACAAGCTCGTACCGGGCC TTTTCAAAAATGAAATGAAAAGAAGAAGGGATTTCTATGCTGCTCATCCGTCGGCTGATGCTGCCAATGGCTCTAATGA AGACAGGGGAGAAGTGGCTGACGAAGACAAAAGAATTATAACAGACGACGAGATAATAAGCTTATCCATTGAGTTCTTT GACCAGAACAGACTGGAACGAAAAGGAAATAAAGAGAAAGAAAAGTCGAAGGAGGAGGTGAACGACAAAAGATATTTGC GCTGCCCGGCAGCGATGACAGTGATGCATCTACGAAAGTTCCTGCGGAGTAAGATGGATATCCCCAACACTTTCCAGAT CGACGTGATGTACGAGGAGGAGCCCCTGAAGGACTACTACACGCTGATGGACATTGCCTACATCTACACCTGGAGACGG AACGGCCCGCTGCCCCTCAAGTACCGCGTGCGGCCCACCTGCAAGAGGATGAAGATCGGCCACCAGCGGGAAGGCCTCA GCAACAGCGGCGAGCTGGAGAGCGACTCCGGCAGCGACAAGGCCAGCAGCCCGGCCGGGGGGCTGCCCTCCACCTCCTC CTGCCTGCCCAGCCCCAGCACGCCGGTCCAGTCCCCCCACCCGCAGTTCCCACACATCTCCAGCACCATGAACGGCACC AGCAGCAGCCCCGGCAGCAACCACCAGTCCTCCTTCACCAACAGAGCACGGAAATCCTCCATAAACGGCTCCTCAGCCA CTTCGTCCGGCTGACGGCCCGGCCTCGACCCTCCTCTCTCTAGATCTCTCATGCCATTACAGCTTTATAGATGCTAATA CACGTGACTCTCGTCCAAACTGCTTTCTTTTGTAGTGACACTGAACTTGGCTATAAAAGGCGAACTAGGTGACATTCGC TGTGGACGTTAATTGCGACGCGAGATTGAAATGTAAATGGTTTCCAAAGGACCGGGAAGCAAACAGAAGTGACACCTGG GTGTGCTGAGTGCTGTGGGGCCCTCAGCCCGACCGAGCTGGTAGAAGCCCTGGGACGTAGCTGGTTAACCCAGACTAAC TCCTCCACCGCGTTCTCTCCGATTGTTATTGTTATTATGCCGTTTTGTGAACCTGTAGAAAGCAAGTGCTTTTTCATCT TGAAATTCGACGAAACAGAAAGGATATGCATAGAATAATGCATATATGTAGCCATGTCACTGTGAATAACAATTTTTGC GTATTAGCCATTTTGATTCTTATGTTGCATCCTTAACTCTCTGTTGCTGCGCAGAACCGATCAAAGGAAAAGTAAACTT CAGTTTTACAATCTGTATGCCTAAAAGCGGGTATTACCGTTTTATTTACTGACTTGTTTAAATGATTCGCTTTTGTAAG AATCAGATGGCATTATGCTTATTGTACAATGCCATATTGGTATATGACATAACAGGAAACAGTATTGTATGATATATTT ATAAATACTATAAAGAAAATATTGTGTTTCATGCACTCATGATATGGTTGTTAAATTTCAGAACCGGTTCGACCCTTGC AGATGCCGCCTGGTTGAGCTCTGCTCGCACTGCCGTAGAGCTGCAGCGCCGACGAAGCACAACCGCTCTGCTAAGCTGG AGGCGATTGCCGATCCCGAAAGCATTTGACTGCCTTTGTCTTTCCCTCCCCCCCCCCCCCCCCCCCCCCAAGTGGTCTG TTTTTTACTTTACCAAATGTCGTTGAAGTGATGAAGTGAAGGAAAAAGAAAAAGGAAAAAAAAAAAGCAAAAAAAAAAA AGCAGAAAACCGACAAAAAGGTCGAGGGAGATGAGATGGAAGTCATTGACGTGCTTGATTGCCTTTTTATTGCTCGGTG CGGTGGGGGCTGTGTTTTTAAAAGCACACGGAATCACTATAGAAGCCATAAACTATTTGGTATAAATTTTAAGGAGCCA GCAGTTGGCTGGCTGAAGGCGTTTTATCTAAATTTCTTTTAATATATATGTCTATGGTACAGTACTAACTTCATTAGAG CTTAACAGGTACTTGAATCCTTCCGATCAATTGCAGAGAATGCCTCCTCGGTGAGGGCCGCCAGCGGGGCGTTTCCTGG GGGCTCCTGAGGGTGCGGTTTGTTCAGCAGAAGGGACTTTTCCGCCACCAAACAGAACGGCCCGGAACACTTTTCAGTT CGTGCTTTGCTTTGGTCGAACTTCGTGTGTGTTCATCACCCACCAGTTATACATTTGTGAGGGTGTTTATTCTATATGG ATATTGTTTCATGTTTGTACGGGAAAATTGTAGTTAAACATTTCATTGTCTCCAGTCTGCAAAAGAAGCACAATTCTAT TGCTTTGTCTTGCTTATAGTCATTAAATCATTACTTTTGCATATAAATTGCTGTTATTTGTCCCGCTTGTTTTTATAGA CCAGGTGATTGCAAACCCTCCACAAGGTTCTTGCTTATTGATGTATAATGTCTTGTTAAACAAGAGTTGATATTTTTTC CTGTAGTAAACATGTACAGTTCGATTTCAACGGTAAAAAACTTCAGTTTTATATACACGAATAACTTTCATTTATAGTT GATCAAAGAAATAAACAAATAAAAGGGATAATTCATTGAAAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001007988.3 ).