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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CBX1
chromobox 1

Gene

Official Symbol	CBX1
Official Full Name	chromobox 1
BirdBase ID	BB-GG1660
CGNC ID	49096
also known as	chromobox protein homolog 1\|chromobox homolog 1 (HP1 beta homolog Drosophila )
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204332
Polypeptide	NP_989663
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.25863

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	31834			FBgn0030082
Human	10951	ENSG00000108468		MIM:604511
Mouse	12412	ENSMUSG00000018666	All phenotypic alleles (3):Targeted, other(2) Gene trapped(1)	MGI:105369
Xenopus	549904, 444708			1005973
Zebrafish	415180, 326746	ENSDARG00000054442, ENSDARG00000004189	ZDB-GENE-040625-68, ZDB-GENE-030131-4945	ZFIN:ZDB-GENE-040625-68, ZFIN:ZDB-GENE-030131-4945

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374237
Ensembl Gene	ENSGALG00000000230
KEGG	gga:374237

GEISHA Id	CBX1	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCCAAGGAAGCCAACATCAAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCCCAGACCGATACACCAGTAATAGC	cDNA Template Length	670
Complete cDNA Template Probe	show GCCAAGGAAGCCAACATCAAGTGCCCCCAGGTGGTCATCTCGTTCTATGAGGAGAGGTTGACATGGCATTCCTACCCCT CAGAGGACGATGACAAGAAAGAGGACAAGAACTAAACCCTGGCACCCGCCCTGGCCAGCCTTTGTATAAAGATCTGAAC TGTGGGTTTGAGCAAGAGGGGGAGAACGCAGCTCTGCTCAGTCGGGAGCGTAGAGATGGCTGGAGAAGATGCCCTTTGA AGAGACCAGTATGGTTTCTGTGCCCTGCAGCTGCTCCGCTGCTTTATGCAGCTTCATGCTGTGTACAGATTCAAACCAG CCCTGCTCACTGGGGGGGAGGGAAGGGTGGGGGGTCCGGGGTGGGGGTGGGGGGGGGCGCTGTGGGATTTCCAGGCTGT CCATTTGGCAGCTTGTGGGAGAGGAAGCAAAGCCCCTTCCATGAAGGACTGTCACTGGTGATGGGTGGGCTGGGGAAAA GGAGTGCAGATGGATACTGCTCATTCTTCAAAGACCATCTCAGCAACCCACAGCCTTCTTCCCAATAGTGTTAACTCTG CATTTTTACAGCGTAGCATGTGTGTAGGTTTTTTGTTTTTTTTTTTTTCCTGTTGTTGGTTTTATTTTTGTTTTGTTTT GTTTTTATCTTTTGCTATTACTGGTGTATCGGTCTGGG

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Early Mesoderm
Epiblast
Primitive Streak

4-6

stage 4

stage 6

Area Opaca
Blood Islands
Early Mesoderm
Ectoderm
Epiblast
Extraembryonic Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Widespread Expression
extraembryonic ectoderm
extraembryonic mesoderm

7-12

stage 7

stage 8

stage 10

stage 10

stage 10

stage 10

stage 12

Anterior Intestinal Portal
Area Opaca
Blood Islands
Ectoderm
Endoderm
Extraembryonic Blood Vessels
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharynx
Primitive Streak
Somites
Widespread Expression
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

13-18

stage 14

stage 16

stage 16

stage 16

stage 16

Diencephalon
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Somites

19-24

stage 22

stage 22

stage 22

stage 23

Dermomyotome
Ear/Otic Placode
Ectoderm
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Wing Ectoderm
Wing Mesenchyme

25

stage 25

stage 25

stage 25

stage 25

stage 25

Dermomyotome
Ear/Otic Placode
Eye
Forebrain
Foregut
Heart
Hindbrain
Leg Mesenchyme
Lung
Mesencephalon
Mesonephros
Nasal Placode/Nerve
Neural Crest
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Wing Mesenchyme

Data from NCBI Unigene EST Profile
Unigene ID: Gga.25863

Mouse

Emage	MGI:105369
Eurexpress	MGI:105369
MGI GXD	MGI:105369

Frog

Xenbase

Fruit Fly

BDGP	FBgn0030082

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-040625-68, ZDB-GENE-030131-4945

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