GEISHA - A Chicken Embryo Gene Expression Database
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FOXI3
forkhead box I3

Gene
Official SymbolFOXI3
Official Full Nameforkhead box I3
CGNC ID53468
also known asforkhead box protein I3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_426357
PolypeptideXP_426357
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human344167MIM:612351
Mouse232077ENSMUSG00000055874All phenotypic alleles (2):Targeted, other(2) MGI:3511278
Xenopus549298, 496395, 494806982121
Zebrafish387256, 387258, 387257ENSDARG00000069715, ENSDARG00000009550, ENSDARG00000055926ZDB-GENE-031126-2, ZDB-GENE-031126-4, ZDB-GENE-031126-3ZFIN:ZDB-GENE-031126-2, ZFIN:ZDB-GENE-031126-4, ZFIN:ZDB-GENE-031126-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428801
Ensembl Gene
KEGGgga:428801

Entry 1

GEISHA IdFOXI3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-ACAACCTCAGCCTCAACGAC-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGCCATTCCCTTTGCAGCACTG-3’cDNA Template Length677
Complete cDNA Template Probeshow
ACAACCTCAGCCTCAACGACTGCTTCCGCAAGGTGCCCCGTGACGAGGACGACCCCGGAAAAGGAAACTATTGGACCTT
AGATCCCAACTGTGAGAAGATGTTTGACAACGGGAACTTCCGGCGCAAGCGCAAGCGACGCTCAGAGCCCAACACCCCC
GCGACCACGGCTGCGGCCTCCTCGCTCGGGGGCCTGAAGGCCGAAGAAGAGCGACCCATCCCAGCCGCAGGCAAACCTT
GTGGAAACAGCCCACCCCCAGAGCTGGACCCATCGCCTTCTGCCAGGGACCATCCCAAAAGCTCCTCTCCCTCCGGTAT
CATTTCATCCACCCCGAGCTGCCTCAGCACCTTCTTCAGCGGCATGAGCTCGCTGAGCGGCGGAGGCAGCCGGCTGACG
GGGGGGCTCAGCACTGACCTGCATCACAGGAACTTCTCTGCTGGACAGCTGAGCAGCGGCACTTTCACCCCTTCCAGCA
GCTCATCTCAGGAGGTGCCTTCACCAGAACAGCTGCAGCGAGTGGCGGGACCTTCCCCTGCCTACTACAGCTCCTTCCA
TCCCAGCAGCGGCAGCCAGGGCGCCCAGTACAACCACTACTACAACTTCACAGTCAACAGCCTCATCTACACCCGAGAT
GGAACGGAGGTGTAGGACGCCGGGGCAGTGCTGCAAAGGGAATGG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
stage 12
stage 12
Ear/Otic Placode
Ectoderm
Pharyngeal Arches and Clefts
Unlabeled
trigeminal region
13-18
stage 17
stage 18
stage 18
stage 18
Eye
Hindbrain
Pharyngeal Arches and Clefts
 
19-24
stage 22
stage 22
stage 22
stage 23
stage 23
stage 24
Eye
Pharyngeal Arches and Clefts
 

Entry 2

GEISHA IdFoxi3.Khatri.2013Data SourcePublication
Complete cDNA Template Probeshow
TGAGCAGCGGCACTTTCACCCCNTTCCAGCAGCTCATCTCAGGAGGTGCATTCACCAGAACAGCTGCAGCGAAGTGGCG
GGACCTTCCCCTGCCTACTACAGCTCCTTCCATCCCAGCAGCGGCAGCCAGGGTGCCCAGTACAACCACTACTACAACT
TCACAGTCAACAGCCTCATCTACACCCGAGATGGAACGGAGGTGTAGGACGCCGGGGCAGTGCTGCAAAGGGAATGGGA
GATGCAGGTGTGTGCGTGGCAGCATGGAGGACCGTGTGCTTTTGCAAACAGCATTTCAATGTGGACGCTTCCCGGGAGT
TCGTTCAGGAAAGACAGATCTTCTCACCTTTCCAAGCAAAAACACCCCACAAACACCAGCAAAAGGCAGATGCAAAATC
TTTTCCCCTGAGCTTAGTACCAAAGATAACTCTAGCCTTGCAGCTTCAGCACGAGAATAAACACTGGGGTATTTTTATA
CATATTTGTATGTAATGTAACTCTCCTGTACATACGTTTCTATGTGGTTTTATATTTGTAAATTATGCTCTGGAGCTGT
ACTTATTTATAATGTTTTCAACTTGGTTAAAGTTTATTTTACTCCGTTTCCCCCTTCTTGTNGTGTAGTGTAGTGTTCG
GTGGTTTGATTATTTCTGTGGGTTAGTTTGTTCGTTAGCGCATTAATAAAACTTTTCAGGCTGAACAGCTGNTGGGAAT
AAAACGTTAACACGCCTAAAAA
CitationKhatri SB, Groves AK. Expression of the Foxi2 and Foxi3 transcription factors during development of chicken sensory placodes and pharyngeal arches. Gene Expr Patterns. 2013 Jan-Feb;13(1-2):38-42. DOI: 10.1016/j.gep.2012.10.001. Epub 2012 Oct 31.
CopyrightCopyright © 2012 Elsevier B.V. All rights reserved.
CommentsAuthors indicated that cDNA probe for chicken Foxi3 was obtained from the UMIST Chick EST Repository (clone ID ChEST50h20).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
stage 3
stage 3
stage 3
stage 3
stage 3
stage 3
Epiblast
Future neural plate border
Future neural plate border, Preplacodal region
4-6
stage 4
stage 4
stage 4
stage 4
stage 5
stage 5
stage 5
stage 5
stage 6
stage 6
stage 6
stage 6
Ectoderm
Neural Plate/Tube
Future trigeminal–otic–epibranchial region
7-12
stage 7
stage 7
stage 7
stage 7
stage 9
stage 9
stage 9
stage 9
stage 9
stage 9
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 10
stage 11
stage 11
stage 12
stage 12
Ectoderm
Neural Plate/Tube
Pharyngeal Arches and Clefts
Surface Ectoderm
Cranial ectoderm excluding otic region, 11 somites stage
10 somites stage
11 somites stage
12 somites stage
8 somites stage
9 somites stage
Cranial ectoderm excluding otic region, 10 somites stage
Cranial ectoderm excluding otic region, 12 somites stage
Dorsal view, 14 somites stage
Future second pharyngeal arch, 14 somites stage
Future second pharyngeal arch, 18 somites stage
Future trigeminal-otic-epibranchial region, 8 somites stage
Future trigeminal–otic–epibranchial region
Future trigeminal–otic–epibranchial region, 9 somites stage
Ventral view, 18 somites stage
13-17
stage 15
stage 15
stage 15
stage 17
stage 17
Pharyngeal Arches and Clefts
Lateral view
all
 
 
 
  

Mouse

EmageMGI:3511278
EurexpressMGI:3511278
MGI GXDMGI:3511278

Frog

Xenbase982121

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-031126-2, ZDB-GENE-031126-4, ZDB-GENE-031126-3
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