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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BOC
BOC cell adhesion associated, oncogene regulated

Gene

Official Symbol	BOC
Official Full Name	BOC cell adhesion associated, oncogene regulated
CGNC ID	11276
also known as	brother of CDO\|Boc homolog, Brother of CDO precursor
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416581
Polypeptide	XP_416581
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7901

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	91653	ENSG00000144857		MIM:608708
Mouse	117606	ENSMUSG00000022687	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:2151153
Xenopus	780199, 443556			923397
Zebrafish	334628	ENSDARG00000074335	ZDB-GENE-030131-6560	ZFIN:ZDB-GENE-030131-6560

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418361
Ensembl Gene
KEGG	gga:418361

Entry 1

GEISHA Id	BOC.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-TCTCGCCTCTCTGTGGAAATCC-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGAAGTATGGTAGGTCGCTGGAACGG-3'	cDNA Template Length	584
Complete cDNA Template Probe	show TCTCGCCTCTCTGTGGAAATCCCAGACCTGGAAAAAGGCTTTTCCTATAAGTTTCGTGTCCGAGCACTGAACATCCTGG GAGAAAGTGAGCCCAGTGCAGCATCTCGGCCATATGTGGTGTCTGGGCACAACAACCGAGTCTACGAGCGCCCTGTGGC TGGGCCATACATCACCTTTACAGATGCCATTAATGAGACCACCATCATGCTGAAGTGGATGTATATCCCAGCCAGCAAC AACAACACTCCCATCCATGGCTTTTACATCTACTACCGCCCCACAGACAGTGACAATGACAGCGACTACAAGAAGGATG TGGTAGAAGGAGATCGATACTGGCACTCCATCAGCCACCTACAGCCAGAGACCTCATATGACATCAAGATGCAGTGCTT CAATGAAGGTGGTGAAAGCGAGTTCAGCAATGTGATGATCTGTGAAACTAAAGCTCGAAAATCTCTTGGTCTGCCGGGT CGTCTTCCACCCTCAACAGTGGCCCCTCAGCAGCATCCCCCACTTAGCGGCGGGCACAGTGGCCTGGGGACAGGAGCCA TGGTGGCCCGTTCCAGCGACCTACCATACTT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Unlabeled

7-12

stage 7

stage 10

stage 12

Head Mesenchyme
Mesencephalon
Somites
Unlabeled

dorsal midbrain

13-18

stage 18

Diencephalon
Mesencephalon
Metencephalon
Telencephalon

19-24

stage 19

stage 22

Cranial PNS
Dermatome
Dermomyotome
Diencephalon
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Lung
Mesencephalon
Mesonephros
Metencephalon
Midbrain
Myelencephalon
Neural Plate/Tube
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Ganglia and Nerves
Telencephalon
Trunk Mesenchyme
Wing Mesenchyme

25-27

stage 27

Diencephalon
Hindbrain
Intermediate Mesoderm
Isthmus/MHB
Limb Buds
Mesencephalon
Midbrain
Neural Crest
Trunk Mesenchyme

Entry 2

GEISHA Id	BOC.Aglyamova.2007	Data Source	Publication
Complete cDNA Template Probe	show `GGAGCAGCATTCATCTTCTACAACGTGCAGGTGTTTGAGCCCCCAGAGGTCACCATGGAGCTGTCCCAGCAGATCATTC CCTGGGGCCAGAGCGCCAAGTTCACCTGCGAGGTGCGAGGAAACCCCCAGCCCTCAGTCATGTGGCTGCGCAATGCTGT GCCCCTCTCTGCCAGCCACCGGCTCCGGCTGTCCCGCCGGGCGCTGCGAGTGGTCAGTGTGGGGCCTGAAGATGATGGC ATTTACCAGTGCATGGCAGAGAATGAGGTTGGAAGTGCACAAGCCATGGTGCAGCTGAGGACGGCCCAGCCAGGAGCTA CCCTCAACCCTGGGCAAGATGCTCAGCTGGATTCAGCTCGGCCTCCAACACCGCCTTCCAGGGACAGTGCCTTAAAGCT GCCTCTGGATAAAGGTAGTCCACCAAAGCCTGTGACCA`
Citation	Aglyamova GV, Agarwala S. Gene expression analysis of the hedgehog signaling cascade in the chick midbrain and spinal cord. Dev Dyn. 2007 May;236(5):1363-73
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Sequence was obtained from NCBI (XM_416581). The primer pairs used were those given in the publication: 5'-GGAGCAGCATTCATCTTCTACAACG-3' as BOC-forward; and 5'-TGGTCACAGGCTTTGGTGGACTAC-3' as BOC-reverse.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 13

stage 18

Midbrain

Tectum

25-26

stage 26

Midbrain

Tectum

Entry 3

GEISHA Id	BOC.Singh.2016	Data Source	Publication
Complete cDNA Template Probe	show CAAGATTGAAACAGCAGCACAAGGGACATTGCAAGACATGGGTCCAAATGAAGCTGCCACCAAGATCGATCAGCTTCCT GCAGTGAGGGCTTCTCCTTGCCCACAGGAAGGCATGTCCCAGGAACACACTCCTGTGAGTGGACCGGAGTTATGCACTC TGCCTGATCAACTTAAACAAACTTTCACATAGACGCCATCTGCAGCTGCATATTTGTAAAGACAAACCCATGCTTTAAC AACTAAAATAAAGGCTTAAGTGTTTTCTGTGGCTGGTTGTATGCTAAAACCTTCCACAGAATGAACCTACATTCTTTTT CCTTGCAGAAACATGGCAAAAAGGACACCTGAGGGAAGGTGACACTTTCCTGCAGTTATAGTTTTCCTCTATGTCACCT ATGTGAATCTTTTCAGTGCTGAGCTTAAGAGAAAAGGGCTGGCTGCTATCTATGGCAACTAAGTGATATAAAACCTCTT GTGGGGAGCAGAGCCGGCGAAAATTTTCATTTACGTCTAAGTATAGATCATTNTGCTTTCTTTTTTCCCCTGAGAAAAT AGAATGCTCAGCACCTTCACAGGGACTCACTGAAAAGGCAGGCAGCACAAATACCATTTGTTTGCTTGTACTGGGGCCA GCAAAGCAGCAGCAGTTCTTGTGCCTGGCTGGGACACAACTGGATCCTGGCTAAAGGTGCACCAGACAGGAACAATGAC CAGGGAGGGGAGAGGG
Citation	Singh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
Copyright	Copyright © 2015 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST870a16.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 28

Limb Buds

31-38

stage 31

stage 34

stage 36

stage 38

Limb Buds

all

Entry 4

GEISHA Id	BOC.Kahane.2013	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GAAGTTGCTGTCGGGATGCTGGGAAGGGGTCAGCGGACGCGCCAAGGAGCTGACAAGAGAGGAGCGACATCCCGCCAGC CCGTGCCATGTGCGGCTTGGGGTTGTAGTGGCGCAGGAAGCTGCTTCCACACCTCTACCACATCCCCTGAGGCAGCTTA TGGGACCCTTCTCTGGGCGCCTCTGCCCCAGGAGACATTGCATGGGATGGCAATGACACGTGGAAAGAAGAGACCCATG TCCGCCATCCTTTGCCTCCTCCTCGCAGCCACGAGCTGCTTTGCCAAACTGAGTGAATCTCTGCAAGTCACTGTGCAGC CTGCCTCCACCGTTCAGAAGCCTGGGGGCTCGGTCAGCCTGTGGTGTGTTGTGGACCCCCCAAGAGTGAACCTCACCTG GAGACTGAATGGAAAGGAGCTGGATGGATCAGACGAGATGCTGGGGATCCACATCGAGCAAGGGAAACTCATTATCACA GCTCTCAACAACCACACCGTGGGGCGATACCAGTGCATTGCTCGTGTGCCCGAAGGAGTCATTGCCAGTGTCCCCGCAG TGGTCACCTTGGCTAATCTCAAGGATTTCAAGTTTGATGGCCCTCACGTGATTGAGGTGGATGAAGGCAACACGGCTGT CATCGCCTGTGACCTGCCCGAAAGCCATCCCAAGGCCCAGGTCCGCTACAGCGTGAAGCATGAGTGGCTGGAGGCCTCC CGAGACAATTACCTTATCATGCCATCCGGGAACCTTCAGATTGTCAATGCAAGCCAAGAAGATGAGGGGACTTATAAAT GTGCTGCCTACAATCCTGTGACACAGGAGGTGAAAACCTCAGTCTCTAGTGAGAGGCTCCGCGTGAGACGCTCCACAGC GGAGGCCGCTCGGATAATCTATCCGCCTGAAGCTCAGACCATCATTGTCACCAAAGGCCAAAGCCTCATCCTGGAGTGT GTGGCCAGTGGGATCCCCCCGCCCCGTGTCACCTGGGCCAAAGATGGCTCCAGTGTCTCAGCGTACAATAAGACACGGT TCCTGCTCAGCAACCTTCTGATTGACCCTACCAGTGAGGAGGACTCAGGCACCTACAGCTGCACGGCTGACAACGGAGT TGGTGAGGCTGGAGCAGCATTCATCTTCTACAACGTGCAGGTGTTTGAGCCCCCAGAGGTCACCATGGAGCTGTCCCAG CAGATCATTCCCTGGGGCCAGAGCGCCAAGTTCACCTGCGAGGTGCGAGGAAACCCCCAGCCCTCAGTCATGTGGCTGC GCAATGCTGTGCCCCTCTCTGCCAGCCACCGGCTCCGGCTGTCCCGCCGGGCGCTGCGAGTGGTCAGTGTGGGGCCTGA AGATGATGGCATTTACCAGTGCATGGCAGAGAATGAGGTTGGAAGTGCACAAGCCATGGTGCAGCTGAGGACGGCCCAG CCAGGAGCTACCCTCAACCCTGGGCAAGATGCTCAGCTGGATTCAGCTCGGCCTCCAACACCGCCTTCCAGGGACAGTG CCTTAAAGCTGCCTCTGGATAAAGGTAGTCCACCAAAGCCTGTGACCACTCCACTGGCAGCGTTTTCACAGTGCTCAGC CAACAAGGAGCTGGTGTCTCCAGCTGAGGCCCCCATCATCCTCAGTTCTCCCCGGACATCCAAAACAGACAGCTACGAC CTAGTGTGGAGACCCCGGCCTGACAGCAGGGCCCCAATCCTCTACTATGTGGTGAAGCATCGCAAGGTGGCCAACGCCT CAGACAGCTGGGCAGTGAGAGATGTGCCAGCCTCGCAGCACCGCCTGACACTCACCAGGTTGGATCCTGGAAGCCTCTA CGAGGTGGAGATGGCCGCTCACAACTGCGCTGGCGAGGGACAGACGGCCATGGTGACCTTCCGGACTGGTAAAGGCCGG CGCCCAAAACCAGAGATTGTTGCCAGCAAAGAACAGCAAATCCAGAGGGATGACCCAGGCACGAGCACTCAGAGCAGCA ACCAGTCTGACAACAGCCGGCTGTCCCCTCCAGAGGCACCAGATCGTCCAACCATCTCCATGGCATCAGAGACATCTGT GTATGTGACCTGGATCCCCCGTGGGAATGGTGGATTTCCTATCCAGTCTTTCCGCGTGGAATATAAGAAACAGAAGAAG TCGGGAGACTGGGTCCTGGCCACCAGTGACATTCCTCCCTCTCGCCTCTCTGTGGAAATCCCAGACCTGGAAAAAGGCT TTTCCTATAAGTTTCGTGTCCGAGCACTGAACATCCTGGGAGAAAGTGAGCCCAGTGCAGCATCTCGGCCATATGTGGT GTCTGGGCACAACAACCGAGTCTACGAGCGCCCTGTGGCTGGGCCATACATCACCTTTACAGATGCCATTAATGAGACC ACCATCATGCTGAAGTGGATGTATATCCCAGCCAGCAACAACAACACTCCCATCCATGGCTTTTACATCTACTACCGCC CCACAGACAGTGACAATGACAGCGACTACAAGAAGGATGTGGTAGAAGGAGATCGATACTGGCACTCCATCAGCCACCT ACAGCCAGAGACCTCATATGACATCAAGATGCAGTGCTTCAATGAAGGTGGTGAAAGCGAGTTCAGCAATGTGATGATC TGTGAAACTAAAGCTCGAAAATCTCTTGGTCTGCCGGGTCGTCTTCCACCCTCAACAGTGGCCCCTCAGCAGCATCCCC CACTTAGCGGCGGGCACAGTGGCCTGGGGACAGGAGCCATGGTGGCCCGTTCCAGCGACCTACCATACTTGATCGTAGG CGTCGTCCTGGGCTCTATTGTACTCCTCATTGTGGCCTTCATCCCCTTTTGTCTTTGGAGAGCCTGGTCCAAGCAGAAG CAAACCATTGACATGGGCTTTCCAGGAGCTGGACTGTTGGTGTCATCCTGCCAGTACACGATGGTGCCTCTGAGGGGCA TTTCTGCTCCTCGTGCCAATGGACATCCCTATGTTAATGGGCAGCCCTATGCCAGTGGGGCACATCTGAACGGCATCTG CCCCTCAGCAGGAGTGGACTATGTGAGCACGAAGCCCCAAGATTACAGTCCAGATGACATGCAGCAGTCACACGAGGAG ACCAATGCCTTGCTGCAGGCGAGAGTGCTGCAAAATGGGAATGCCCACCAAGACTACCAGCCCACCAGATTGCCCAGTT CAAGACCAGAAGACAGCTCTTTCCTGTACAGTCTCCCAGATGACTCCACTCACCAACTTCTGCAGCCACAAGATGACTG TCCACACCTTCAAGAGCGCTTCGTTGGCCTGCATCATCCAGTGATGGGCAACAAAGTGGGAGGTTCTAGTTTGGATCCT CGACGAGATCCACTGTTTCACCATGGAAGCCCGTTCTGCCTAGGCCTAGTGCCAGTGGAAGAGGTAGAAAGACTAGACT GCTGCCAGTCCAGAGGAGACCTCCATCCCCCGGCTCCAGTGCTCACATCTTTGAGTCAGGACCTACCGGGACATCTGAA CAGCAGCTCACCATCGCTGAGGCCCTTGGAGACTCATTCTCCTATCAGTTAGGGACCAAGCTGCCTTTTGCAAAAGACT TATTCTAAAGAGAAAAAAAAAAAAGAATGGGTATTTATTTTTGTATAACACCTCTATTTATATATTTATGCACTTGTAT ATAGATGTATATGTGCCTTTTATAATGCTATGGAGACAGAAGGCATCTTCAGCAAGGCAACAGGAGGGCCTGAGAAACA AGGCAACAGCTACCTGTGGCACTGGGCTGTTCATCAGAGCACAAGATTGAAACAGCAGCACAAGGGACATTGCAAGACA TGGGTCCAAATGAAGCTGCCACCAAGATCGATCAGCTTCCTGCAGTGAGGGCTTCTCCTTGCCCACAGGAAGGCATGTC CCAGGAACACACTCCTGTGAGTGGACCGGAGTTATGCACTCTGCCTGATCAACTTAAACAAACTTTCACATAGACGCCA TCTGCAGCTGCATATTTGTAAAGACAAACCCATGCTTTAACAACTAAAATAAAGGCTTAAGTGTTTTCTGTGGCTGGTT GTATGCTAAAACCTTCCACAGAATGAACCTACATTCTTTTTCCTTGCAGAAACATGGCAAAAAGGACACCTGAGGGAAG GTGACACTTTCCTGCAGTTATAGTTTTCCTCTATGTCACCTATGTGAATCTTTTCAGTGCTGAGCTTAAGAGAAAAGGG CTGGCTGCTATCTATGGCAACTAAGTGATATAAAACCTCTTGTGGGGAGCAGAGCCGGCGAAAATTTTCATTTACGTCT AAGTATAGATCATTTTGCTTTCTTTTTTCCCCTGAGAAAATAGAATGCTCAGCACCTTCACAGGGACTCACTGAAAAGG CAGGCAGCACAAATACCATTTGTTTGCTTGTACTGGGGCCAGCAAAGCAGCAGCAGTTCTTGTGCCTGGCTGGGACACA ACTGGATCCTGGCTAAAGGTGCACCAGACAGGAACAATGACCAGGGAGGGAGAGGGCAGAAGAAGCAAGAGCAGCTGCA GGTTGTTTCAGCTGTTTAATTAAAAAAGAGCAGCCAACCCCAAAGCTCTGTGTGCTGTCAGAAACTTTGCAATGGAAGA ACACTGCATCAAAACCCCTCCACTTGGAGGTTAAATAAACTTTTCACAGTAAGACAAAGTAAGCACTATCAATGATCAC TCACTGTCAACATCCCAAATGCAAGAGGAAAAAAATAGAAAGAATAAAACCAGAAAACAAAGACTAGCTCTACTCTATA ATGCATGCAAGTCAGTGAAATTACAGGCTAACTTCACATTTGCTATAGTCTTCTTGTTCTAAATAAAAGGGACGTCCTG CACTAGTTTCCCACCTCCACAGAGCAGGGTCAAGCCTCTCACTGGTGCCATACTCTTCTAGCATTGTAGGCCCTGAGGA AAAAGGTCCCCTTGTTTTCCCCAAACATAGTGCTTCCCATTTCTTTTTACAATATTCCAACTCTGTTAGGAGACAACTA TCATTGCAGTGGGAATATTCAACAAGTAACAAGATGCACTCTTAAGACAGACGTCCTTTACCAATTACTGAGAACCTGG ATGCTATAGATAGAATTGGCCAGTTTCCAGCCTTCAAAAACCATTTTGTACTGAGAGCTAAGAACAGGTGTGCACATAC AAACACACTCCAGTGCAAAGCTCTGCAATGGACTGACAACAGCACTTACTGGTTGCAATTGCACTTTTTAATGCCCTAT CCACCACTACAGCCATATTTGGATAGAGGAAACAAATTTAATCCTTTACAATGAAACCTCTTTGTAACCAAAACAATAA ATTTCACACTTGCAAGTATTACTGTTGCCATAGTTCAATGTCTGCTTTTAAGGGACACCTGAAGTGTTAGTTACCATTC ATGGTTTAAGAACAGGGAATATTTGATCTGGTGCCTCCAGGTCCTGTGGTGATGAAGGCTGTAGAAACTGATTGTTCCT GGTCAGGAGACTGAGCTGTTCAATTAAATGCCCATCTTTTCTGCTTAGAAAATTGATTTCTTCTCTTAGGATGGCTTCG TCATGAGCCAAACGTTTCAGCTGTGACTCCATCCTGGCCTTCTCTTTCATATCAGCAGTTCGGGGCCCCTGAAATTCTA CTCCCTGTAAGGAGAGAAAAAAAATGCAAGAACTAATGGTGGAAAATTTATTTCATCTGGGAAAGTGAAGCATACCAAG AAGTGGGACAGTGACTGCTCCACTCCTCACTCAGAACTACTTGGAAGACAGAGTGAGAGACCTTTATCTTTGGCTCAAT CTGTTACCAATGGCTGCCTTATTCCCTAATAAAGAGAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (XM_025143712.1).