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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PDLIM7
PDZ and LIM domain 7

Gene

Official Symbol	PDLIM7
Official Full Name	PDZ and LIM domain 7
CGNC ID	20787
also known as	LMP, LMP-4, PDZ and LIM domain protein 7\|Enigma 90kDa large protein\|Enigma LIM-domain loss protein\|Enigma protein alpha\|Enigma protein beta\|Enigma protein gamma\|LIM mineralization protein\|LIM mineralizing protein\|PDZ and LIM domain 7 (enigma)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001005345
Polypeptide	NP_001005345
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.48638

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9260	ENSG00000196923		MIM:605903
Mouse
Xenopus	595027, 779123, 380426			5860424
Zebrafish	393813		ZDB-GENE-040426-2092	ZFIN:ZDB-GENE-040426-2092

Gene Ontology

Molecular Function	protein binding, zinc ion binding
Biological Process	cell differentiation, multicellular organismal development, ossification
Cellular Component	cytoskeleton, Z disc

Links to other databases

Entrez Gene	416362
Ensembl Gene	ENSGALG00000026159
KEGG	gga:416362

Entry 1

GEISHA Id	PDLIM7.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATAGCACCGCCCTCAACAAAAC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGCGAAGAAACCACCCTCATCCAG	cDNA Template Length	517
Complete cDNA Template Probe	show GGCCCTTTGGGGCCAGCTCACCTCCGAACCCACGGCCTGGGCTGGTGACGAAACCCGTGACGTACGTGCCCCTGGCGCC CGCCTGCACCCCCCAGCACAATGGCCAGGTCTCCGTACCGGACCCATCCCCGGGAGCAGCAATGAAGACAGAACCAGGA TTGGCCCCCAGGACCCCTGCTGCCACCCCTGGCCCTACCAGCCGCCCGCCCTGGGCTGTGGACCCTTCATTTGCTGAGC GCTACGCCCCAGACAAGACGAGCACGGTGCTGAGCAAGCACAGCCAGCCGGCCACGCCAACCCCCATGCAGAACCGCAG CTCCATCGTGCAGGCAGCCCAGCAGGCACCTGAGAGCCCCGGCCGTACACCCCTCTGTTACAAGTGCAACAAGATCATC AGGGGACGCTACCTCGTGGCACTGGGACATTATTACCACCCCGAGGAGTTCACCTGCTGCCAGTGCAGGAAGGTGCTGG ATGAGGGTGGTTTCTTCGCCTTTAGTGAGGGTTAATTTCTAGAGCAA

Stage

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Comments (click to highlight)

4-6

stage 4

Widespread Expression

13-18

stage 18

Ubiquitous

stage 19

Ubiquitous

Entry 2

GEISHA Id	LMP-4.Krause.2004	Data Source	Publication
Complete cDNA Template Probe	show GAAACGTTGCGGCGCGACCCGCTCGGCCCCGCACCGCCGGGCGACCCTGCCCAGCCGCGGAGATGGGCGAGATGGAGTC CTATAAGGTGATGCTGAACGGGCCGGCGCCCTGGGGGTTCCGGCTGCAGGGAGGGAAGGACTTCAGCATGCCGCTCTCC ATCTCCAGGCTGACTCCAGGTGGAAAGGCTGCCCAGGCCGGCGTGGGAGTGGGCGACTGGGTGCTGTACATCGACGGGG AGAGCACCGGCACCATGACACACATCGAGGCCCAGAACAGGATCCGCGCCTGCGGGGACAGGCTCTGCCTCACCCTGAG CAGAGCCCAGAACCACCTGGGGAAGCCGCAGAAGGACTCACTCCCCTGCTCTGAGCCCCCGAAATATAACTTCGCTCCC AGCACCGCCCTCAACAAAACAGCTCGGCCCTTTGGGGCCAGCTCACCTCCGAACCCACGGCCTGGGCTGGTGACGAAAC CCGTGACGTACGTGCCCCTGGCGCCCGCCTGCACCCCCCAGCACAATGGCCAGGTCTCCGTACCGGACCCATCCCCGGG AGCAGCAATGAAGACAGAACCAGGATTGGCCCCCAGGACCCCTGCTGCCACCCCTGGCCCTACCAGCCGCCCGCCCTGG GCTGTGGACCCTTCATTTGCTGAGCGCTACGCCCCAGACAAGACGAGCACGGTGCTGAGCAAGCACAGCCAGCCGGCCA CGCCAACCCCCATGCAGAACCGCAGCTCCATCGTGCAGGCAGCCCAGCAGGCACCTGAGAGCCCCGGCCGTACACCCCT CTGTTACAAGTGCAACAAGATCATCAGGGGACGCTACCTCGTGGCACTGGGACATTATTACCACCCCGAGGAGTTCACC TGCTGCCAGTGCAGGAAGGTGCTGGATGAGGGTGGTTTCTTCGAGGAAAAGGGCTCCATCTTCTGCCCCAAGTGCTACG ACACGCGCTATGCGCCCAGCTGTGCTAAATGCAAGAAGAAGATCACCGGGGAGGTCATGCATGCACTCAAGATGACCTG GCACGTGCAGTGCTTCACCTGTGCAGCCTGCAAAACTCCCATCCGCAACCGTGCCTTCTACATGGAGGAGGGACAGCCC TACTGCGAGAGAGACTATGAGAAGATGTTTGGCACCAAGTGCCGTGGCTGTGACTTCAAGATCGATGCTGGGGACCGGT TCCTGGAGGCACTGGGCTTCAGCTGGCATGACACTTGCTTCGTCTGTGCGATCTGCCAGACCAATCTGGAAGGGAAGAC ATTTTACTCCAAGAAGGACAAGCCGCTGTGCAAGAGCCATGCTTTCTCCCACGTGTGATGGGGCAAGAGTTCAGCTGTG CCCATGCATACCCCTGGCCCTGCATGCTCCTTTCCCACCTCTTCCCGTGCCCCAGGTAGCCAGGCTGAGACTTCACCCC TTCCCCTTGCTCCTGCCTCTTTCCTGGCAGCTCCTAGCTGGGGCCTGGCAGAAGCAGCCCTGGCCCCTTCCAGCTGGCT AGCTTCTTTTGTGTCCCCCCTAGCTGACATAGGAGCCTGGGGAAGGGGCTGCCACAAAGGTCTCCTTCCCCGAAGCTGC TCAGCACAATGGTTGTAGCCGTGCTGAGGCCGGCGCTGGGGAGGGTCTGGCTGCAGCAGGGCTGCTCCTTTGCTTTGAT GGGTTCCGGCTGCCTTGGCACTCAGCACCAGAGCAGGGATGCTCCTAGCCCACAGCCCCCGCCAAACTCTTCCCTCACC TCCCCAGCTTCATACTCAGCACACGGGGTTTGAGCACTGGCCCTTCTCCCCCTGCCTGCAGTGATCCCTCAGCCAGGCA GACTGCTGCCGTGGTTTCCTACCCACCCCCACATGGCCGCATGCCATGGAGCTAGGGGGGCTGTGGGGCTGTCCAGTGG CAGCACCCCCGTGCCATGGAGCAGGACCGTGTGCCATGCCTGCCCCAGCCATAGGCTGGGAGTGCACACCGGCCTCTGG CTAATGGGTTCCCATCAAGCTTGAAAACTGCTTCCTACCAAAGAGCGCGTGCCACCGCTGTCCCAGCACTGTAAATGCT TCTCCCAACCCCCACTCTCCAGTTGGGCTGCGTCTGATGTAGCCACGGTGCTTTTAGTGCCTTGAATAAACACTTTTTT GCGAGTGAAAAAAAAAAAAAAAAAAA
Citation	Krause A, Zacharias W, Camarata T, Linkhart B, Law E, Lischke A, Miljan E, Simon HG. Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development. Dev Biol. 2004 Sep 1;273(1):106-20.
Copyright	Reprinted from Developmental Biology, Volume 273, Issue 1, Ange Krause, William Zacharias, Troy Camarata, Barbara Linkhart, Evelyn Law, Antje Lischke, Erik Miljan, and Hans-Georg Simon, Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development, Pages 106-120, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
Comments	Authors said: The chicken LMP-4 antisense probe spans the entire open reading frame of the gene. LMP-4: (FWD) 5′-CCTGGGCTGGTGACGAAAC, (REV) 5′-GGCCAATCCTGGTTCTGTCTT, (PROBE) 5′-AGCACAATGGCCAGGTCTCCGTAC. Genbank accession numbers for all sequences are as follows:... AY376690