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MSC
musculin| Gene | | Official Symbol | MSC | | Official Full Name | musculin | | CGNC ID | 13879 | | also known as | musculin|musculin (activated B-cell factor-1) | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | In Situ Hybridization | GEISHA | | EST Profile | |
| | Orthology | | | Gene Ontology | | Molecular Function | | | Biological Process | | | Cellular Component | |
| | Links to other databases | |
Entry 1| GEISHA Id | pgm2n.pk009.j5 | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Probe | show AAGCTCTCCAAGCTGGACACGCTGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCT
ACGAGAACGGCTACGTGCACCCCGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGA
CGTCTCTGCCGCCAGCAGATTATGTGGAACTACCGCTTAGCCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTT
AAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAA
AGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAA
CAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAA
AGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGT
TTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTTTGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCA
GCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAACTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAG
GACGTGNGGCTGTCCCCAAGATGTGGCACAGTTTCTACATCTTAATATGGAAGAGAAATTCTGCTCACTGAAAGGCCAG
GGTGCACGTGCTGCAAAGAATGAATTGTGTGATGCTGCAATACAGC |
Entry 2| GEISHA Id | MyoR.Bothe.2006 | Data Source | Publication | | Complete cDNA Template Probe | show TCTTCTTATATCCCCCTGTTGAACGTTTACGCGAGCGTTCACCCGTCCTTTCCCTCGCGGGGCTCTCCCGCAGAGCCCG
ATACCCCGCAGCCCACGGGGCGGCCCCGCGCCCCTCCGCGCCCCTCCGCGCGGCGCGGCGCCGCGCCGGGCATTGCGGG
AGGCACCGCCCCACCGCGGGGCTCGGCCGGGGGCTGCCCCCTCCTCCTCCCCCCGGCCCGGCCGCCTCTCGGCCCCGCG
GCCGCCGCTATATAGCGCTGTGCGGGGGCGCATCCCCCCGCCGCTCCCCCCGCGCCTCCGCACGGACTCTCCGCGGCGG
GGCCGCCCCGCGCTGCCCGCAGCCGCCTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAG
CCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGGAGCTGCCCGAGATGGACCTGC
GGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTACCCCTCGGGGGACAACTCCTC
GGCGGCGGAGGAGGAGGAGGAGGA | | Citation | Bothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60. | | Copyright | Copyright © 2006 Wiley-Liss, Inc. | | Comments | Probe sequence is nt 649-1226 of GenBank entry XM_418293 |
Entry 3| GEISHA Id | MyoR.Dastjerdi.2007 | Data Source | Publication | | Complete cDNA Template Probe | show AGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCGGGTGCTGAGCAAAGCGTTCTCC
CGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGACACGCTGCGCCTGGCCTCCAGCT
ACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGCACCCCGTCAACCTGACTTGGCC
ATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTATGTGGAACTACCGCTTAG
CCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTT
ACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGG
ACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAAC
TCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTT
ATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTT
TGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAA
CTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCAAGATGTGGCACAGTTTCTACAT
CTTAATATGG | | Citation | Dastjerdi A, Robson L, Walker R, Hadley J, Zhang Z, Rodriguez-Niedenführ M, Ataliotis P, Baldini A, Scambler P, Francis-West P. Tbx1 regulation of myogenic differentiation in the limb and cranial mesoderm. Dev Dyn. 2007 Feb;236(2):353-63. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Comments | Authors indicated ""A 1,200-bp cMyoR cDNA fragment was generated using 5AGA GGG GAA GCA GTC GCA G 3 and 5ACA GCA TTC GGA TTA GTG AAG 3 primers." The probe listed begins with the first primer, but only 879 bases 3' of that are currently associated with this transcript in ensembl. These are listed here as probe sequence. |
Entry 4| GEISHA Id | MYOR.Bothe.2007 | Data Source | Publication | | Complete cDNA Template Probe | show ATGCTCATTGCAGGAGAATCGGACCAGGAGACCTTTAATAGTCCATCCCAACTCAAACGATTCTACGATTCCATGACTT
TCCTTTCCGTCCAGCAGCTCCGAGCTGTCACTTCGTGCTGTCTTCACCACCGTCCCAGCGGCCGTGTGCCCCAACGAGA
GCGAGCAGTGACCCCCCCGGCGGGTCCCGGGGGAGCCGCCCCCACCCCCTCCGCCTCCGCCCGGCCGAAGCTAACTGGG
GAGGCCAAGCAGCCCCCAAGTCTGGCGCACACCCCTTCCTCAGTGCCAGCGAGAGCATCTCAGTGTCAACCCGAGTTCA
AGAGATCCAGTTGCAGGATCAGCCGCGTGTTTCGGCGCTTCAAGCAATGTCAAGTTTCCCTTGGAAGGGCTGCTCCCAA
ACCCGGCTCTGATGTGGTTCTGGCCCCAGCGGGCGAAGCCGAGGTTTACACAGCGTTAAGTGGCCGCGGGCCGCTGAGC
GCTGGGCGAAAGCACGGCCGCGGGTGCCAGGAAAGTCGCTCTGCGGCAGCGGGAAGGTTCCACTTAACTCGGGAGGGAA
ATACAGGGCCGGGAGGGCAGCGGGGAAGCAATGTGTTGCTTATTCATCCTGGGAAGAGGCGGCGTCTGGGGCGCGGTAG
GGATGCACCTCGGGGGCTCTTCTTATATCCCCCTGTTGAACGTTTACGCGAGCGTTCACCCGTCCTTTCCCTCGCGGGG
CTCTCCCGCAGAGCCCGATACCCCGCAGCCCACGGGGCGGCCCCGCGCCCCTCCGCGCCCCTCCGCGCGGCGCGGCGCC
GCGCCGGGCATTGCGGGAGGCACCGCCCCACCGCGGGGCTCGGCCGGGGGCTGCCCCCTCCTCCTCCCCCCGGCCCGGC
CGCCTCTCGGCCCCGCGGCCGCCGCTATATAGCGCTGTGCGGGGGCGCATCCCCCCGCCGCTCCCCCCGCGCCTCCGCA
CGGACTCTCCGCGGCGGGGCCGCCCCGCGCTGCCCGCAGCCGCCTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCGCCGC
AGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGGAGCT
GCCCGAGATGGACCTGCGGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTACCCC
TCGGGGGACAACTCCTCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGCGAGGGCA
GCTGTGCGGCGGGGCCGGCGGGCTGCAAGAGGAAGCGGGCGAGGGGCAGCGGCCCCGGGGGCAAGAAGGCGCCGTCGGG
GCCGCGGGGGCCGGCGGCAGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCGGGTG
CTGAGCAAAGCGTTCTCCCGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGACACGC
TGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGCACCC
CGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTA
TGTGGAACTACCGCTTAGCCAAAGTAATTTTTTTCCTTGTTGATCATTTTTTTTACGGGCTGGATGTTTTTAAGAGCTG
TGATTTGTCGGCTCGAGACCAGAAGATGGGGACCAAACCCCGTCTCTGTGTGTTAAATCTGTGTTTCCCCTCAGTTCTT
TCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGAC
TGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTT
CTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACT
AACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATT
TTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTTTGTCCTTTTA
ACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAACTAATTCCTT
TGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCAAGATGTGGCACAGTTTCTACATCTTAATATGG
AAGAGAAATTCTGCTCACTGAAAGGCCAGGGTGCACGTGCTGCAAAGAATGAATTGTGTGATGCTGCAATACAGCAAGG
ATTCAAAACGTGTTAAACATTATCTTCTGTACTGCCACGCTTCTCTTTGATAAGTTTACACTCAAATGAGTTCTAGTGA
TGTTTCTTCACTAATCCGAATGCTGTAATAAAAGGAGGATGCCATCAAATAAGTTGCAAATGTAAATAACTTTATTTTT
TTATAAATGACATTAAAAGCTTGGTTACAATG | | Citation | Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_418293). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 7-10 |  | | stage 10 |
 | | stage 10 |
| Head Mesenchyme
|
Entry 5| GEISHA Id | MyoR.vonScheven.2006 | Data Source | Publication | | Complete cDNA Template Probe | show ACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTATGTGGAACTA
CCGCTTAGCCAAAGTAATTTTTTTCCTTGTTGATCATTTTTTTTACGGGCTGGATGTTTTTAAGAGCTGTGATTTGTCG
GCTCGAGACCAGAAGATGGGGACCAAACCCCGTCTCTGTGTGTTAAATCTGTGTTTCCCCTCAGTTCTTTCCCTTAGAG
CTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCT
GAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTAT
TAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACC
AGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTT
TTGTATTCACGGGTCGGGTTTACT | | Citation | von Scheven G, Bothe I, Ahmed MU, Alvares LE, Dietrich S (2006). Protein and genomic organisation of vertebrate MyoR and Capsulin genes and their expression during avian development.
Gene Expr Patterns. Apr;6(4):383-93. Epub 2006 Jan 18. | | Copyright | Copyright © 2005 Elsevier B.V. All rights reserved. | | Comments | Gene specific primers were designed on the basis of the sequences available on the NCBI, the Ensembl and chick EST databases (http://www.ncbi.nlm.nih.gov/, http://www.ensembl.org/index.html, http://www.chick.umist.ac.uk), with MyoR forward: CGCGAATTCACTTGGCCATTTGTGGTCTC; MyoR reverse: CGCTCTAGAGTAAACCCGACCCGTGAATA, Located primers in NCBI Accession # XM_418293. |
Entry 6| GEISHA Id | MYOR.Bothe.2011 | Data Source | Publication | | Complete cDNA Template Probe | show CGCACGGACTCTCCGCGGCGGGGCCGCCCCGCGCTGCCCGCAGCCGTTTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCG
CCGCAGCATTAGCAGCAGCAGCCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGG
AGCTGCCCGAGATGGACCTGCGGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTA
CCCCTCGGGGGACAACTCCTCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGCGAG
GGCAGCTGTGCGGCGGGGCCGGCGGGCTGCAAGAGGAAGCGGGCGAGGGGCAGCGGCCCCGGGGGCAAGAAGGCGCCGT
CGGGGCCGCGGGGGCCGGCGGCAGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCG
GGTGCTGAGCAAAGCGTTCTCCCGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGAC
ACGCTGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGC
ACCCCGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAG
ATTATGTGGAACTACCGCTTAGCCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGA
GATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTG
CCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTA
ACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAG
AGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAAT
AAGTGTAACCATACTTTGTTTTTGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAG
GCTACCACCCAATGGAATGAAACTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCA
AGATGTGGCACAGTTTCTACATCTTAATATGGAAGAGAAATTCTGCTCACTGAAAGGCCAGGGTGCACGTGCTGCAAAG
AATGAATTGTGTGATGCTGCAATACAGCAAGGATTCAAAACGTGTTAAACATTATCTTCTGTACTGCCACGCTTCTCTT
TGATAAGTTTACACTCAAATGAGTTCTAGTGATGTTTCTTCACTAATCCGAATGCTGTAATAAAAGGAGGATGCCATCA
AATAAGTTGCAAATGTAAATAACTTTATTTTTTTATAAATGACATTAAAAGCTTGGT | | Citation | Bothe I, Tenin G, Oseni A, Dietrich S., Dynamic control of head mesoderm patterning., Development. 2011 Jul;138(13):2807-21. | | Copyright | Permission from the authors and the Company of Biologists Ltd. Copyright held by the authors. | | Comments | As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_418293.3 ). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 7-10 |  | | stage 10 |
 | | stage 10 |
| Head Mesenchyme
|
Entry 7| GEISHA Id | MYOR.Grenier.2009 | Data Source | Publication | | Complete cDNA Template Probe | show CGCACGGACTCTCCGCGGCGGGGCCGCCCCGCGCTGCCCGCAGCCGTTTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCG
CCGCAGCATTAGCAGCAGCAGCCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGG
AGCTGCCCGAGATGGACCTGCGGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTA
CCCCTCGGGGGACAACTCCTCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGCGAG
GGCAGCTGTGCGGCGGGGCCGGCGGGCTGCAAGAGGAAGCGGGCGAGGGGCAGCGGCCCCGGGGGCAAGAAGGCGCCGT
CGGGGCCGCGGGGGCCGGCGGCAGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCG
GGTGCTGAGCAAAGCGTTCTCCCGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGAC
ACGCTGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGC
ACCCCGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAG
ATTATGTGGAACTACCGCTTAGCCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGA
GATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTG
CCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTA
ACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAG
AGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAAT
AAGTGTAACCATACTTTGTTTTTGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAG
GCTACCACCCAATGGAATGAAACTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCA
AGATGTGGCACAGTTTCTACATCTTAATATGGAAGAGAAATTCTGCTCACTGAAAGGCCAGGGTGCACGTGCTGCAAAG
AATGAATTGTGTGATGCTGCAATACAGCAAGGATTCAAAACGTGTTAAACATTATCTTCTGTACTGCCACGCTTCTCTT
TGATAAGTTTACACTCAAATGAGTTCTAGTGATGTTTCTTCACTAATCCGAATGCTGTAATAAAAGGAGGATGCCATCA
AATAAGTTGCAAATGTAAATAACTTTATTTTTTTATAAATGACATTAAAAGCTTGGT | | Citation | Grenier J, Teillet MA, Grifone R, Kelly RG, Duprez D.. Relationship between Neural Crest Cells and Cranial Mesoderm during Head Muscle Development. PLoS ONE. 2009; 4(2): e4381. Published online 2009 February 9. | | Copyright | Copyright Grenier et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. | | Comments | As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_418293.3). |
MouseFrogFruit FlyZebra FinchZebrafish |
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