GEISHA - A Chicken Embryo Gene Expression Database
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ATF3
activating transcription factor 3

Gene
Official SymbolATF3
Official Full Nameactivating transcription factor 3
CGNC ID7459
also known ascyclic AMP-dependent transcription factor ATF-3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_419429
PolypeptideXP_419429
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human467ENSG00000162772MIM:603148
Mouse11910ENSMUSG00000026628All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2) MGI:109384
Xenopus100494437, 4473116085250
Zebrafish393939ENSDARG00000007823ZDB-GENE-040426-728ZFIN:ZDB-GENE-040426-728
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421369
Ensembl Gene
KEGGgga:421369

Entry 1

GEISHA IdATF3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATTCAGCGCCTCCGCAATTGTCC
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGGCTTTCCCTGACAGCCACAAGGAcDNA Template Length911
Forward cDNA Template Probeshow
CCCCCGGGCCCTCACAGGNAAAGTNTGTCCATCCAGCACAGCGGGTATGTACCATGTGCATCATCGAAGTCATAGTGTT
CTAGCACAAACGTCGTGAGTGCAGATACTGTATACTAGCAGAGAGCTAAATCTTCTGAAGCTGTTGTCTGTAGCTCCTA
GGAACAGCATGTATGACAGGTGCAAAACCTATTATGAGGCAGAAGGCTCTTCAGTTGGACCGAGACCAGATCTTCCGAG
GGGAAGAATCTCTGACAAGCCAAAAATGATTTGTTCTGCTTAAGAAAGCGATCTGCCCTTCCTAAACGCTCTTTACTAT
TAGAATCCTACACATAAGTCAGATCCTCTGTGGATTCTGTTGCTGTTAAAACATACTAGAAATATTTCCACATTTTCCG
TATCACTTAACCTTGTAATGTTCCTTCTTTGATCTGTTGAATAAAAAGATTCCTTTCATCTTCAGGTGTCCTTCCATTT
TGTGCCCGGACTATACAGGTGGGCCTGTGAAGATTTAGCATGTATATCAAATGCTGCTTCTCATTCTTTAGCTCTTCAA
TCTGGGCTTTTAATTCCGCATTGATAGTCTCCAGCTTTTCTGATTCTTTCTGCAAACATTCTGTTTTTTCCTTCTTTTT
GTTTCGGCACTTTGCAGCAGCAATTTTGTTCCTTTCCCTTCTTCGCTTTTTTCTTTCATCCTCTTCAGGAGAAAACTCC
GTTTTCATGATCGATGTTTCCATCGGCCTTTCGGACACTGTCACCGTATCCAAAGTAGAAGACATCCTGTGGGACTGAC
GTTTGTTTTGGATGGCGAATCTAAGTTCCTCTTTCACCAGTGGGGTTAGATTTGTGAAATCATCAAACCCCAGTGACCC
TGCAGGGGACAAAGTGGGGACAATTGCGGAGGCGCTGAATATTCTGCGGCCGCAGCCTTTTAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
stage 6
Early Mesoderm
Germinal Crescent
Headfold
Lateral Plate Mesoderm
 
7-12
stage 8
stage 8
stage 9
stage 10
stage 11
Anterior Intestinal Portal
Anterior/Second Heart Field
Intermediate Mesoderm
Lateral Plate Mesoderm
 
13-18
stage 13
stage 16
stage 17
Anterior Intestinal Portal
Blood Vessels
Gut
Intermediate Mesoderm
Lateral Plate Mesoderm
Nephric Ducts
Pharyngeal Arches and Clefts
 
19-24
stage 21
stage 23
Gut
Nephric Ducts
Nephric Tubules
Outflow Tract
Pharyngeal Arches and Clefts
Tail
 
25
stage 25
Gut
Liver
Nephric Ducts
 

Entry 2

GEISHA IdATF3.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATTTGACAAGTCCTAGTAGGTGTGACAAAGAAAGGTTTCTTGCAAACTACCCATGTAGCTAAGTTGGTATTTTAGGAGC
TGGAACCCCACCTATTATCCTTTGGGAAATACAGTGTTTCCTTGCATTCAATAGAGCATTTTGTACCATCACTTGGCAA
CTGGGTGAATTGGACCCACTGTAAAGAGGGAAGTAACTACGAAGGGATTTTGATACGGTTTTGCCCAAGCAAAGAACTG
CAGGACTGAATCCCAGGTTCATGAATCATGAAAAGTTTAAAATAAACCAAAATCATCTGGGATCTAATCCTACAAGCCT
TAACCCTCACCGACACAAGAGGTTCCATGGCCTGTAGTGATCTGGTTATACAGATGGCTGTCAGGAGTAAGATGTGGAC
AAGGCTTTTTCCGTCCTTGTCAGGATTGCTTCCTTTTGCCAGATGATTCAGAGGGAAAAATTATGATTGCAGCTACTTT
TATTTTATGTTTGGGTGGTAACTACAGTCAATCAAAAGTGTTACTTAGAATCTAAAGGAGACAAGAGTTCTGATGTAGT
GAATAATTGTTCTCATTTTTTATTAAATACTAACCTTAGATGTTTCTGAACTGGTAGAAGAGCTGCTGGACAATACAGT
TGGAGCTACGAGTGTTTAAATTCTGATGTTTCTGTGAAATTCTCAGATTGGTTTAATCCTACGAAATATATCCTTACAA
TTTTTTGGTAAAAGAAAATATCCTTATTTATCACTAATATCATAATGAGTAAAGTTAATAAATACTGCAAGCAGATAA
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
 
1-3
stage 3
Area Pellucida
Primitive Streak
 
4-6
stage 6
Lateral Plate Mesoderm
Neural Plate/Tube
neural plate border / (mesoderm?) lateral to neural plate border
7
stage 7
Area Opaca
 
all
 
  

Mouse

EmageMGI:109384
EurexpressMGI:109384
MGI GXDMGI:109384

Frog

Xenbase6085250

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-728
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