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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CCNJL
cyclin J-like

Gene

Official Symbol	CCNJL
Official Full Name	cyclin J-like
CGNC ID	1007
also known as	cyclin-J-like protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_414487
Polypeptide	XP_414487
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.12900

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	79616	ENSG00000135083
Mouse	380694	ENSMUSG00000044707		MGI:2685723
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	416155
Ensembl Gene
KEGG	gga:416155

Entry 1

GEISHA Id	CCNJL.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-GAAAAGACCCTGTGAGTGATACGG-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGACATTACCAGCAGTTCCTCTGTCC-3'	cDNA Template Length	926
Complete cDNA Template Probe	show GAAAAGACCCTGTGAGTGATACGGAATGTGTATCTGAATGAGAACCATGGAGGAACAGCATCCTTATGTCTTACTCATC CACAGGACGTGGATCTGGATCCACTGACCACTGGAAGCTGGGTGCCTTTGCCAAGGATTGTATCTTTCTCTCTTAATAA GAGAAATAGAAATGCAGTAACATACCTCATGGAATGTAACTTTGAAAGGCACATGCATAGCAACCCTGTGGATACTTTC TAGTCTTCAGTTAGTGACTCACCAATCCGAGTTGGCTGAAAGCTTGAGTTGAAGTGTTATTTCAGGCTAGAGTGTTCCT TGAATTTCTGGTTAAGTAGCAGTGTTCTTGGAGGATGTTATTGAAAACAGAGAGCTCTCTCTCTCTCCCAGGGATGTGT CTTTTGAAGAGTGGCAGCTTATACTACTGGAAGCTTCTACAAAAAGTAGCCTGAAGTGGCATTTGCTTAAACATGGATG CTCTTTGTTTCTGCAGAGGTTGATACATAGTACACTTCAGTTTTCTTTGACCTGGAGTGACAGTGCAGGAGTAAGACTG CATAATAAAAAGGAACAAAGGCTGGAAGACTATCAAATAATCTTTTGTCTTAAAATTATCTTGGAAACAAGATGTGATG CTACTGAACTGAACACAGAACACCGCTCTGCCTTTGCTTATTTGGGGAAAAAAAGTCCAACAGAAACATTAAAAAGCAT AAATGATCTTAGAACTTAACCATGCTGCTGCTTTTTGAGACTGGAGATAATTGTTAGTAAAACTGTTTACAAGCTTTAT CAGGGATTTAATGTTACTTGAAGAAATCTTCTTTGAAAAACTCTCAAACTTCAGTCCCTTCAGTTACTTTTGTAGTTTG GGCTCAACGGTCTGTGGCAGCAGTTCAATTTTAGGACAGAGGAACTGCTGGTAATGT

Stage

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Comments (click to highlight)

13-18

stage 13

stage 17

Allantois
Forebrain
Foregut
Head Mesenchyme
Neural Plate/Tube
Notochord
Sclerotome
Unlabeled

19-24

stage 24

Foregut
Head Mesenchyme
Leg Mesenchyme
Mesonephros
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

25-26

stage 26

Foregut
Head Mesenchyme
Leg Mesenchyme
Lung
Notochord
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Wing Mesenchyme

Entry 2

GEISHA Id	CCNJL.Alev.2010	Data Source	Publication
Complete cDNA Template Probe	show TCCGCTCTGTTCTACGTCCCGGTGGTGCCCCGTCTGCCTCCCAGAGCTTTGTCTGGATGGGAAGAAAAAGGATGGAGGA GCAGTGGTGGAGAGGGGAGCTGGCGGCAGACATCCATCAGACCCTGAGGACGAAGGAACTTAACCTCCCTCTGTATAAG GCCCATTCACCACAGATTGGGATGCGCCGTTACTTCATTGATCTCTTGACCGTCCTCAGCAACCGTTGCAGTCTCTGCC CTACAGCCCGGCACCTCGCCATCTACTTACTGGACCTCTTCATGGATCGCTATGATATCACTGTCAAGCAACTGTACGT CACTTCGTTTGCCTGTCTTCTCCTAGCAAGTAAATTTGAAGAGAAAGAAGATAAAGTTCCGAAGTTGGAGCACTTAAAT AACCTGGCATACATGTGCAATGTGAATGTGGTATTGAGCAAGAAAGATTTGCTTAGAATGGAAATGCTGCTTCTGGAAA ACTTCAACTGGAACCTGTGTATACCAACAGCCGCACACTACATTGACTACTACCTCTATGCATCTATTGGTGAGAATGA CCTTCACAACGGCTGGCCGATCACCTCACTAACCAAAGTCAAAGCATTTATGGAAAAATATGCATATTATTTCCTTGAT TTCTCAGTGCAAGATCACAGTTTCCTTCATTTCCGTCCATCTCTGATTGCTGCAGCTTCTGTGTGTGCCTCACGCATCT GTATGCAGATTTCTCCTGCCTGGACAACACAGCTTGAATTGCTCACGTGTTACTCCTGGGAGCACCTTGCCCAATGCAT TGAAATGATGCTCATATATTATGAGAATGATATCAAAGAAGCCAGTAACATAAAAAAGGAAGTAACAATCCAACATCAG CAACAGGAAGTAATGGAAAACCTGAGACATGGAGCCACTACTCAAGTTCTATTTCAGCAATCTAGTTACCATCCGTTAG CCCAGCATTCAGCTAGTCTTTCCCAGTTCCAGTCACCAGTGCAGGATTTGTGCTCTGCTTATCGTGACTCCTTACAGGC ACACAGGCCCAGCACTCTGCTTTCTGGGAGTGCTGACAGCTCATTGCACTCCTATGCTGCTCTTGGCCAGCCTGCAGCC ATCTGCCCAGTCTCTGCACGTGCAATGCCTATTGCTGTGCAGGTGGCCTTAGGAACAGAGCCCAGCCACTGCATTTCCA TGGCTTACGGTAGTAGTTACTTCAGTGGCTGCCATTCATATCCAGCCGGGTGTTTTGATGGATAAATACTGGTGTGAGA AAAAGGTGACACGAGTGAAAACTGAAGAAAAGACCCTGTGAGTGATACGGAATGTGTATCTGAATGAGAACCATGGAGG AACAGCATCCTTATGTCTTACTCATCCACAGGACGTGGATCTGGATCCACTGACCACTGGAAGCTGGGTGCCTTTGCCA AGGATTGTATCTTTCTCTCTTAATAAGAGAAATAGAAATGCAGTAACATACCTCATGGAATGTAACTTTGAAAGGCACA TGCATAGCAACCCTGTGGATACTTTCTAGTCTTCAGTTAGTGACTCACCAATCCGAGTTGGCTGAAAGCTTGAGTTGAA GTGTTATTTCAGGCTAGAGTGTTCCTTGAATTTCTGGTTAAGTAGCAGTGTTCTTGGAGGATGTTATTGAAAACAGAGA GCTCTCTCTCTCTCCCAGGGATGTGTCTTTTGAAGAGTGGCAGCTTATACTACTGGAAGCTTCTACAAAAAGTAGCCTG AAGTGGCATTTGCTTAAACATGGATGCTCTTTGTTTCTGCAGAGGTTGATACATAGTACACTTCAGTTTTCTTTGACCT GGAGTGACAGTGCAGGAGTAAGACTGCATAATAAAAAGGAACAAAGGCTGGAAGACTATCAAATAATCTTTTGTCTTAA AATTATCTTGGAAACAAGATGTGATGCTACTGAACTGAACACAGAACACCGCTCTGCCTTTGCTTATTTGGGGAAAAAA AGTCCAACAGAAACATTAAAAAGCATAAATGATCTTAGAACTTAACCATGCTGCTGCTTTTTGAGACTGGAGATAATTG TTAGTAAAACTGTTTACAAGCTTTATCAGGGATTTAATGTTACTTGAAGAAATCTTCTTTGAAAAACTCTCAAACTTCA GTCCCTTCAGTTACTTTTGTAGTTTGGGCTCAACGGTCTGTGGCAGCAGTTCAATTTTAGGACAGAGGAACTGCTGGTA ATGTGGGCAGAGATAGGGAACTGGTTAACTTTATTGGGAAATTGGGTCAGTTGCAGCACTAGGCAATGCTGACTTAGTT TTCTTGAACATTGCCTTGGTTCTCTTGGAAAATGTAGCTGGTGAATTGCAGATCATATTACTTTATAATGAGATGCACC TACTGTGAGATACCCAAATGTTTCCTTTTCAATTGAGATCAGAGAAGATTGTCTAGGTCTTTGTTTGTTTAACTGCAAT GTAGATATTTACAAGAAACAGACTTCTGAAATGTGAAACTTTTAGTTTTGATACGCAGCCACTATCGTGTGTTCCTTTG AAGGCAATACTGTTGGACCGTCCTTTTTCCTTAAGGATCTCAGGACTGCAGTACAGGTAATGTGCAATATGCTTTTTCT GACTTGGAGCAGCTTTTCCAAGTCATGTGTCGATGCTGTTTTAAATTATATTTTCAGAGAATTGTTTTTAAGGGCGTTT TAAGGTGGAGGGGAAAAATTAGCCTGCATGCTGATGTGTGCTTGTGTAACCATCTTCTGAGAATGCAGTGTTTGTTGTT AAGCTAATGATTTCCTGCATTCAGCAGGCTAGGGGCATTTTTTTCATTTAAAAAAGGCAAACATAATGAAGAGGCAATA CTTTTCAGAAATGGGTCTAGAAGCGTAGAGAACTTAGTTCATCTTTAATTCTGTTGGTTTTGTATTTATATTAAACTTT ATTTTTAGAAGACTGTAGTGTATTTTATATCTCGTCATTCAACAGAACTACTGAACAACACAATTGTGGCAGTACTGTT GTATGGTTTTTCTTTGGTTTTATCACC
Citation	Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
Copyright	Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_414487.3).