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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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RET
ret proto-oncogene

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	RET
Official Full Name	ret proto-oncogene
CGNC ID	1837
also known as	proto-oncogene tyrosine-protein kinase receptor Ret, ret proto-oncogene
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205190
Polypeptide	NP_990521
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.654

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	5979	ENSG00000165731	MIM:209880	MIM:164761
Mouse	19713	ENSMUSG00000030110	All phenotypic alleles (42):Targeted, knock-out(5) Targeted, other(37)	MGI:97902
Xenopus	100495902, 373625			485175
Zebrafish	30512	ENSDARG00000055305	ZDB-GENE-980526-307	ZFIN:ZDB-GENE-980526-307

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	396107
Ensembl Gene	ENSGALG00000002555
KEGG	gga:396107

Entry 1

GEISHA Id	RET.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	ACAGGGGAGTGGAAAAGGAATC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGAGGCTCTCTCATCGGGGTTATC	cDNA Template Length	908
Forward cDNA Template Probe	show GGAATTTCTGGTTGCCATCACTACCCACGNTAGCTTGGTCCCACTTTTCGGCTTTCCCTGAGAAAAACTGCGCAAGGAG CCATATTTAGCATATTCCACAATTAAATAGAGCGGGCCATCTTGACTGCAGGCTCCGTAAAGTTTGATGACGTGAGGAT GGTTCACCTGTTTCAAAAGGTTGAACTCTGACAGCAGATCTCGCAGCTCGCTCTGGGAAGCATTTTCTTTTAGCATTTT CACAGCCACAGTAGTATAGCCAGCTCTTCCCTTGAGTCTGAAAGCTGTTGCCTTGACAACCTTCCCAAATTCTCCTTCT CCAAGAGTCTTGCCTAGAACCAGGTTCTTCCGAGGGAATTCCCACTTTGGATCTTCTGGTATCTTAAAGGTGTCTACAG ACACCTGGTTCTCCATGGAGTCTAAAGAAGGTCGACGGACATTAGTAGAAGAATAACTGATGGGATATGACTGGGCTGG GCGCCGGAATGTCATTTCTGCAGAGGCAATAGGTGGCTTTGGAGAATTCTTGTGGTAGCGATGGATGAAATAGGAAGAA AGCAGCACAGAGATGATGAAGGACAACAGCACCGCCCCTGCTATCACAGTCTTGCACACTTCATCACAAAATTGCTCCT TGATATCATCTTTCTCACAATAACAGTTCTGTCTTGGGAAGCAGTAACAAATCCCATGTCCTGACTTAATTCCAAGGTT TCCAGTGCCTTTCCCATGACCACCAATAATATTTCCATTTGTGCAGTCCTGGGGGCAAATAGCTGGATCTTTGCTCTCC ACGATATCACAGGTGCCATCTGGACAAGTCTTGATACTTGGGGTGCATGTGGAATAGTTTGTGGTGATTCCTTTTCACN CCCC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Notochord
Paraxial Mesoderm

7-12

stage 8

stage 9

stage 11

Ear/Otic Placode
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Nephric Ducts
Neural Crest
Neural Plate/Tube
Notochord
Somites
Spinal Cord

13-18

stage 14

stage 15

stage 17

Cranial PNS
Ear/Otic Placode
Foregut
Hindbrain
Intermediate Mesoderm
Isthmus/MHB
Midbrain
Nephric Ducts
Neural Crest
Pharyngeal Arches and Clefts
Somites
Spinal Cord

neural crest in foregut

19-24

stage 22

stage 23

Cranial PNS
Ear/Otic Placode
Forebrain
Gizzard
Hindbrain
Lung
Midbrain
Neural Crest
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme

neural crest in gizzard

25-26

stage 26

Cranial PNS
Ear/Otic Placode
Forebrain
Hindbrain
Midbrain
Neural Crest
Spinal Cord
Spinal Ganglia and Nerves
Trunk Mesenchyme

neural crest in foregut

Entry 2

GEISHA Id	RET.Homma.2000	Data Source	Publication
Complete cDNA Template Probe	show CTGCCCGGAGCGCCTGTGGCCCAGGAAGATGCGCTCGGTGCGGGGGGCGGCCGGCCTCCTGCTGCTGTGCGGGGCTTCC TTTGGTCTGTACTTCCCCAGAAAGGAGTACTCAGAGAACGTCTACATTGACCAGCCAGCAGGTGCGCCGCTCCTACGCA TCCACGCCTTGAGGGATTCACATGGGAAACAGCCCACTTTCATCTGTGCCAGAAGTCTCATCATTTCTCGAGCAAGATC CCATGAAAATCACTGGTTTCAAATCAGAGAAAAAATGGGACTTCTCTACCTCAGCAAGAGCCTAGATAGAGAAGACTTT AACATGCTGTCTGTAGGAAACTGGATGCCATTATCAAAGGTGATGCTGTATGTCTTCCTCTCATCTCACCCTTTCCAAG AGAAGGAATGTGACTCTGCTACTCGTACCACAGTCGTCCTCTCTTTGATCAATGCTACTGCACCAGCTTGCAGTTCACT GTCAGCAAGGCAGCTTTGCTTCACAGAAATGGATCTCTCCTTTCACATCAAGGAGAATAAACCCCCTGGTACATTTCAT CAGCTCCAGTTACCCTCAGTTCATCATCTGTGTCAGAATCTCAGCATTACCTACAAACTGTTGGCAGCCGAAGGCCTGC CTTTTCGGTACAATGAGAACACCACTGGTGTGAGTGTAACACAGCGCCTAGATCGAGAGGAGAGAGAGAGATATGAGCT GATCGCCAAATGCACCGTGAGAGAAGGCTTCAGGGAAATGGAGGTTGAGGTGCCCTTCCTCGTCAACGTGTTAGATGAA GATGACTCTCCTCCCTTCCTTCCCAACGGCACTGACACTGCAGATGCTGTCGTGGAGTTCAATAGAAAAGAGGGAACTG TCCTTGCAACGCTAACTGTGTATGATGCAGACACCACACCTATTTATCCCCTTGAAAGCAGCAGAAAGAAATACACAGG AACAATAATTACTGACGATCCATGGATAAATGAAACATTTCGGGTGGAGCACATTTTCGATGAAATCCACTTCAGCCCA AATGGCAGCCAAGAGAGAGGAACTCAACACGAATACAAACTGGTACTGAATAAAAGTATTTCAGTCACAGAGCATCGTT CCTTCCAGTTGGATGTTTTGGTGAACGACACAGAATTTAATGGCCCAGAAAAATCAGTGATGCTTCATTTCAATGTCTC CATCCTTCCTGTCAGCATTCAGTTTCCAAACACAACTTATCGATTCACAGTAAACAGAAATGCTCAACGTTTTGCACAA ATAGGAAAAATCTGCATCGAAAACTGTATGAAGTTCCGTGGTGTGAACATCACCTACAAGTTACTGTCCCCCAATGTGA GCTGCTATGCTGTTGGCATACTTCAAGGCCGAGAAGACAAATATGGAAGCCTTTATGTGAATGATTCCTCTGTGCTACT TAGACCTGAATGCAAAGAAATACAATACACCGTTCAAGCTACAGACAAGCAGAGCAGGAAACATACCAAAACCCTTTTC ACTGTTGTATTAGAAGGAACTCTTTTTAAAAAAGAAGAGGACTGCCCTGACTCTTGTGCTATGAGTAAGCACCTTGCTG AATGTGAAGAGTGTGGTGGCCTGGGAGTGCTAACAGGAAGATGCCAGTGGAGACAGGGGAGTGGAAAAGGAATCACCAC AAACTATTCCACATGCACCCCAAGTATCAAGAACTTGCTCCAGATGGCCACCTGTGATATCGTGGAGAGCAAAGATCCA GCTATTTGCCCCCAGGACTGCACAAATGGAAATATTATTGGTGGTCATGGGAAAGGCACTGGAAACCTTGGAATTAAGT CAGGACATGGGATTTGTTACTGCTTCCCAAGACAGAACTGTTATTGTGAGAAAGATGATATCAAGGAGCAATTTTGTGA TGAAGTGTGCAAGACTGTGATAGCAGGGGCGGTGCTGTTGTCCTTCATCATCTCTGTGCTGCTTTCTTCCTATTTCATC CATCGCTACCACAAGAATTCTCCAAAGCCACCTATTGCCTCTGCAGAAATGACATTCCGGCGCCCAGCCCAGTCATATC CCATCAGTTATTCTTCTACTAATGTCCGTCGACCTTCTTTAGACTCCATGGAGAACCAGGTGTCTGTAGACACCTTTAA GATACCAGAAGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGGTTCTAGGCAAGACTCTTGGAGAAGGAGAATTTGGG AAGGTTGTCAAGGCAACAGCTTTCAGACTCAAGGGAAGAGCTGGCTATACTACTGTGGCTGTGAAAATGCTAAAAGAAA ATGCTTCCCAGAGCGAGCTGCGAGATCTGCTGTCAGAGTTCAACCTTTTGAAACAGGTGAACCATCCTCACGTCATCAA ACTTTACGGAGCCTGCAGTCAAGATGGCCCGCTCTATTTAATTGTGGAATATGCTAAATATGGCTCCTTGCGCAGTTTT CTCAGGGAAAGCCGAAAAGTGGGACCAAGCTACGTGGGTAGTGATGGCAACAGAAATTCCAGTTACTTGGATAACCCCG ATGAGAGAGCCTTAACAATGGGAGATCTGATATCGTTTGCATGGCAGATATCACGAGGGATGCAGTACCTGGCAGAAAT GAAGCTCGTCCATCGTGACTTAGCAGCCAGGAATGTGCTGGTGGCAGAAGGGCGCAAAATGAAGATTTCTGATTTTGGC CTATCCCGTGATGTGTATGAAGAAGATTCCTATGTCAAGAGGAGCAAGGGTCGGATACCTGTTAAATGGATGGCCATAG AATCCCTGTTTGATCATATCTATACAACACAAAGTGATGTGTGGTCGTTTGGAGTTCTGCTCTGGGAGATTGTAACTCT GGGAGGCAATCCCTACCCAGGTATTGCTCCTGAAAGACTCTTTAACCTCCTAAAAACAGGCTACAGAATGGAGAGACCA GAAAACTGTAGTGAAGAAATGTACAACCTGATGTTGCGCTGCTGGAAGCAAGAACCAGATAAAAGGCCAACATTTGCTG AGATCAGCAAGGAACTGGAGAAAATGATGGTGAAGAGTAGGGACTACTTAGATCTTGCGGCTTCCACCCCTTCTGATTC CTTACTATATGATGATGGGCTCTCAGAAGAGGAGACACCTCTCGTGGACTGTAATAACGCTCCCCTCCCTCGAACCCTT CCTTCCACATGGATTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTCTAGCAACACACACACACAC ACACAGTTTTCTCTTCTTTACTGTTCTCAGACTCTGTAACCCCATTACAGTGTTTCTTGTCTGAACGAAGCCAATCAAA ATTTGCTTGGAAGCTTCTTTTGGG
Citation	Homma S, Oppenheim RW, Yaginuma H, Kimura S. Expression pattern of GDNF, c-ret, and GFRalphas suggests novel roles for GDNF ligands during early organogenesis in the chick embryo. Dev Biol. 2000 Jan 1;217(1):121-37.
Copyright	Reprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
Comments	According to the authors, "A plasmid encoding the extracellular domain of the chick c-ret proto-oncogene was a generous gift from Dr. F. Costantini. Digoxigenin-labeled riboprobes were synthesized from the linearized template with SacI using T3 RNA polymerase (antisense probe) and KpnI-linearized template using T7 RNA polymerase (sense control probe)." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (NM_205190).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

Isthmus/MHB
Midbrain
Nephric Ducts
Pharyngeal Arches and Clefts
Rhombomeres
Spinal Cord
Surface Ectoderm
Trunk Mesenchyme

PA ectoderm
PA mesoderm

13-18

stage 13

stage 18

Cranial Ganglion
Ear/Otic Placcode
Head Mesenchyme
Hindbrain
Isthmus/MHB
Midbrain
Nephric Ducts
Neural Crest
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Spinal Ganglia and Nerves
Surface Ectoderm

Distal Ganglia of the Facial (VII), Glossopharyngeal (IX), and Vagus (X) Nerves
Dorsal Root Ganglia
Epibranchial Placode
Trigeminal Ganglion

Entry 3

GEISHA Id	RET.Burns.2005	Data Source	Publication
Complete cDNA Template Probe	show CTGCCCGGAGCGCCTGTGGCCCAGGAAGATGCGCTCGGTGCGGGGGGCGGCCGGCCTCCTGCTGCTGTGCGGGGCTTCC TTTGGTCTGTACTTCCCCAGAAAGGAGTACTCAGAGAACGTCTACATTGACCAGCCAGCAGGTGCGCCGCTCCTACGCA TCCACGCCTTGAGGGATTCACATGGGAAACAGCCCACTTTCATCTGTGCCAGAAGTCTCATCATTTCTCGAGCAAGATC CCATGAAAATCACTGGTTTCAAATCAGAGAAAAAATGGGACTTCTCTACCTCAGCAAGAGCCTAGATAGAGAAGACTTT AACATGCTGTCTGTAGGAAACTGGATGCCATTATCAAAGGTGATGCTGTATGTCTTCCTCTCATCTCACCCTTTCCAAG AGAAGGAATGTGACTCTGCTACTCGTACCACAGTCGTCCTCTCTTTGATCAATGCTACTGCACCAGCTTGCAGTTCACT GTCAGCAAGGCAGCTTTGCTTCACAGAAATGGATCTCTCCTTTCACATCAAGGAGAATAAACCCCCTGGTACATTTCAT CAGCTCCAGTTACCCTCAGTTCATCATCTGTGTCAGAATCTCAGCATTACCTACAAACTGTTGGCAGCCGAAGGCCTGC CTTTTCGGTACAATGAGAACACCACTGGTGTGAGTGTAACACAGCGCCTAGATCGAGAGGAGAGAGAGAGATATGAGCT GATCGCCAAATGCACCGTGAGAGAAGGCTTCAGGGAAATGGAGGTTGAGGTGCCCTTCCTCGTCAACGTGTTAGATGAA GATGACTCTCCTCCCTTCCTTCCCAACGGCACTGACACTGCAGATGCTGTCGTGGAGTTCAATAGAAAAGAGGGAACTG TCCTTGCAACGCTAACTGTGTATGATGCAGACACCACACCTATTTATCCCCTTGAAAGCAGCAGAAAGAAATACACAGG AACAATAATTACTGACGATCCATGGATAAATGAAACATTTCGGGTGGAGCACATTTTCGATGAAATCCACTTCAGCCCA AATGGCAGCCAAGAGAGAGGAACTCAACACGAATACAAACTGGTACTGAATAAAAGTATTTCAGTCACAGAGCATCGTT CCTTCCAGTTGGATGTTTTGGTGAACGACACAGAATTTAATGGCCCAGAAAAATCAGTGATGCTTCATTTCAATGTCTC CATCCTTCCTGTCAGCATTCAGTTTCCAAACACAACTTATCGATTCACAGTAAACAGAAATGCTCAACGTTTTGCACAA ATAGGAAAAATCTGCATCGAAAACTGTATGAAGTTCCGTGGTGTGAACATCACCTACAAGTTACTGTCCCCCAATGTGA GCTGCTATGCTGTTGGCATACTTCAAGGCCGAGAAGACAAATATGGAAGCCTTTATGTGAATGATTCCTCTGTGCTACT TAGACCTGAATGCAAAGAAATACAATACACCGTTCAAGCTACAGACAAGCAGAGCAGGAAACATACCAAAACCCTTTTC ACTGTTGTATTAGAAGGAACTCTTTTTAAAAAAGAAGAGGACTGCCCTGACTCTTGTGCTATGAGTAAGCACCTTGCTG AATGTGAAGAGTGTGGTGGCCTGGGAGTGCTAACAGGAAGATGCCAGTGGAGACAGGGGAGTGGAAAAGGAATCACCAC AAACTATTCCACATGCACCCCAAGTATCAAGAACTTGCTCCAGATGGCCACCTGTGATATCGTGGAGAGCAAAGATCCA GCTATTTGCCCCCAGGACTGCACAAATGGAAATATTATTGGTGGTCATGGGAAAGGCACTGGAAACCTTGGAATTAAGT CAGGACATGGGATTTGTTACTGCTTCCCAAGACAGAACTGTTATTGTGAGAAAGATGATATCAAGGAGCAATTTTGTGA TGAAGTGTGCAAGACTGTGATAGCAGGGGCGGTGCTGTTGTCCTTCATCATCTCTGTGCTGCTTTCTTCCTATTTCATC CATCGCTACCACAAGAATTCTCCAAAGCCACCTATTGCCTCTGCAGAAATGACATTCCGGCGCCCAGCCCAGTCATATC CCATCAGTTATTCTTCTACTAATGTCCGTCGACCTTCTTTAGACTCCATGGAGAACCAGGTGTCTGTAGACACCTTTAA GATACCAGAAGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGGTTCTAGGCAAGACTCTTGGAGAAGGAGAATTTGGG AAGGTTGTCAAGGCAACAGCTTTCAGACTCAAGGGAAGAGCTGGCTATACTACTGTGGCTGTGAAAATGCTAAAAGAAA ATGCTTCCCAGAGCGAGCTGCGAGATCTGCTGTCAGAGTTCAACCTTTTGAAACAGGTGAACCATCCTCACGTCATCAA ACTTTACGGAGCCTGCAGTCAAGATGGCCCGCTCTATTTAATTGTGGAATATGCTAAATATGGCTCCTTGCGCAGTTTT CTCAGGGAAAGCCGAAAAGTGGGACCAAGCTACGTGGGTAGTGATGGCAACAGAAATTCCAGTTACTTGGATAACCCCG ATGAGAGAGCCTTAACAATGGGAGATCTGATATCGTTTGCATGGCAGATATCACGAGGGATGCAGTACCTGGCAGAAAT GAAGCTCGTCCATCGTGACTTAGCAGCCAGGAATGTGCTGGTGGCAGAAGGGCGCAAAATGAAGATTTCTGATTTTGGC CTATCCCGTGATGTGTATGAAGAAGATTCCTATGTCAAGAGGAGCAAGGGTCGGATACCTGTTAAATGGATGGCCATAG AATCCCTGTTTGATCATATCTATACAACACAAAGTGATGTGTGGTCGTTTGGAGTTCTGCTCTGGGAGATTGTAACTCT GGGAGGCAATCCCTACCCAGGTATTGCTCCTGAAAGACTCTTTAACCTCCTAAAAACAGGCTACAGAATGGAGAGACCA GAAAACTGTAGTGAAGAAATGTACAACCTGATGTTGCGCTGCTGGAAGCAAGAACCAGATAAAAGGCCAACATTTGCTG AGATCAGCAAGGAACTGGAGAAAATGATGGTGAAGAGTAGGGACTACTTAGATCTTGCGGCTTCCACCCCTTCTGATTC CTTACTATATGATGATGGGCTCTCAGAAGAGGAGACACCTCTCGTGGACTGTAATAACGCTCCCCTCCCTCGAACCCTT CCTTCCACATGGATTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTCTAGCAACACACACACACAC ACACAGTTTTCTCTTCTTTACTGTTCTCAGACTCTGTAACCCCATTACAGTGTTTCTTGTCTGAACGAAGCCAATCAAA ATTTGCTTGGAAGCTTCTTTTGGG
Citation	Burns AJ, Delalande JM (2005). Neural crest cell origin for intrinsic ganglia of the developing chicken lung. Dev Biol. 2005 Jan 1;277(1):63-79.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205190).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 26

stage 30

Gut
Lung

gut mesenchyme

31-35

stage 35

Gut
Lung
Spinal Ganglia and Nerves

enteric ganglia
presumptive neurons

Entry 4

GEISHA Id	RET.Wilm.2004	Data Source	Publication
Complete cDNA Template Probe	show CTGCCCGGAGCGCCTGTGGCCCAGGAAGATGCGCTCGGTGCGGGGGGCGGCCGGCCTCCTGCTGCTGTGCGGGGCTTCC TTTGGTCTGTACTTCCCCAGAAAGGAGTACTCAGAGAACGTCTACATTGACCAGCCAGCAGGTGCGCCGCTCCTACGCA TCCACGCCTTGAGGGATTCACATGGGAAACAGCCCACTTTCATCTGTGCCAGAAGTCTCATCATTTCTCGAGCAAGATC CCATGAAAATCACTGGTTTCAAATCAGAGAAAAAATGGGACTTCTCTACCTCAGCAAGAGCCTAGATAGAGAAGACTTT AACATGCTGTCTGTAGGAAACTGGATGCCATTATCAAAGGTGATGCTGTATGTCTTCCTCTCATCTCACCCTTTCCAAG AGAAGGAATGTGACTCTGCTACTCGTACCACAGTCGTCCTCTCTTTGATCAATGCTACTGCACCAGCTTGCAGTTCACT GTCAGCAAGGCAGCTTTGCTTCACAGAAATGGATCTCTCCTTTCACATCAAGGAGAATAAACCCCCTGGTACATTTCAT CAGCTCCAGTTACCCTCAGTTCATCATCTGTGTCAGAATCTCAGCATTACCTACAAACTGTTGGCAGCCGAAGGCCTGC CTTTTCGGTACAATGAGAACACCACTGGTGTGAGTGTAACACAGCGCCTAGATCGAGAGGAGAGAGAGAGATATGAGCT GATCGCCAAATGCACCGTGAGAGAAGGCTTCAGGGAAATGGAGGTTGAGGTGCCCTTCCTCGTCAACGTGTTAGATGAA GATGACTCTCCTCCCTTCCTTCCCAACGGCACTGACACTGCAGATGCTGTCGTGGAGTTCAATAGAAAAGAGGGAACTG TCCTTGCAACGCTAACTGTGTATGATGCAGACACCACACCTATTTATCCCCTTGAAAGCAGCAGAAAGAAATACACAGG AACAATAATTACTGACGATCCATGGATAAATGAAACATTTCGGGTGGAGCACATTTTCGATGAAATCCACTTCAGCCCA AATGGCAGCCAAGAGAGAGGAACTCAACACGAATACAAACTGGTACTGAATAAAAGTATTTCAGTCACAGAGCATCGTT CCTTCCAGTTGGATGTTTTGGTGAACGACACAGAATTTAATGGCCCAGAAAAATCAGTGATGCTTCATTTCAATGTCTC CATCCTTCCTGTCAGCATTCAGTTTCCAAACACAACTTATCGATTCACAGTAAACAGAAATGCTCAACGTTTTGCACAA ATAGGAAAAATCTGCATCGAAAACTGTATGAAGTTCCGTGGTGTGAACATCACCTACAAGTTACTGTCCCCCAATGTGA GCTGCTATGCTGTTGGCATACTTCAAGGCCGAGAAGACAAATATGGAAGCCTTTATGTGAATGATTCCTCTGTGCTACT TAGACCTGAATGCAAAGAAATACAATACACCGTTCAAGCTACAGACAAGCAGAGCAGGAAACATACCAAAACCCTTTTC ACTGTTGTATTAGAAGGAACTCTTTTTAAAAAAGAAGAGGACTGCCCTGACTCTTGTGCTATGAGTAAGCACCTTGCTG AATGTGAAGAGTGTGGTGGCCTGGGAGTGCTAACAGGAAGATGCCAGTGGAGACAGGGGAGTGGAAAAGGAATCACCAC AAACTATTCCACATGCACCCCAAGTATCAAGAACTTGCTCCAGATGGCCACCTGTGATATCGTGGAGAGCAAAGATCCA GCTATTTGCCCCCAGGACTGCACAAATGGAAATATTATTGGTGGTCATGGGAAAGGCACTGGAAACCTTGGAATTAAGT CAGGACATGGGATTTGTTACTGCTTCCCAAGACAGAACTGTTATTGTGAGAAAGATGATATCAAGGAGCAATTTTGTGA TGAAGTGTGCAAGACTGTGATAGCAGGGGCGGTGCTGTTGTCCTTCATCATCTCTGTGCTGCTTTCTTCCTATTTCATC CATCGCTACCACAAGAATTCTCCAAAGCCACCTATTGCCTCTGCAGAAATGACATTCCGGCGCCCAGCCCAGTCATATC CCATCAGTTATTCTTCTACTAATGTCCGTCGACCTTCTTTAGACTCCATGGAGAACCAGGTGTCTGTAGACACCTTTAA GATACCAGAAGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGGTTCTAGGCAAGACTCTTGGAGAAGGAGAATTTGGG AAGGTTGTCAAGGCAACAGCTTTCAGACTCAAGGGAAGAGCTGGCTATACTACTGTGGCTGTGAAAATGCTAAAAGAAA ATGCTTCCCAGAGCGAGCTGCGAGATCTGCTGTCAGAGTTCAACCTTTTGAAACAGGTGAACCATCCTCACGTCATCAA ACTTTACGGAGCCTGCAGTCAAGATGGCCCGCTCTATTTAATTGTGGAATATGCTAAATATGGCTCCTTGCGCAGTTTT CTCAGGGAAAGCCGAAAAGTGGGACCAAGCTACGTGGGTAGTGATGGCAACAGAAATTCCAGTTACTTGGATAACCCCG ATGAGAGAGCCTTAACAATGGGAGATCTGATATCGTTTGCATGGCAGATATCACGAGGGATGCAGTACCTGGCAGAAAT GAAGCTCGTCCATCGTGACTTAGCAGCCAGGAATGTGCTGGTGGCAGAAGGGCGCAAAATGAAGATTTCTGATTTTGGC CTATCCCGTGATGTGTATGAAGAAGATTCCTATGTCAAGAGGAGCAAGGGTCGGATACCTGTTAAATGGATGGCCATAG AATCCCTGTTTGATCATATCTATACAACACAAAGTGATGTGTGGTCGTTTGGAGTTCTGCTCTGGGAGATTGTAACTCT GGGAGGCAATCCCTACCCAGGTATTGCTCCTGAAAGACTCTTTAACCTCCTAAAAACAGGCTACAGAATGGAGAGACCA GAAAACTGTAGTGAAGAAATGTACAACCTGATGTTGCGCTGCTGGAAGCAAGAACCAGATAAAAGGCCAACATTTGCTG AGATCAGCAAGGAACTGGAGAAAATGATGGTGAAGAGTAGGGACTACTTAGATCTTGCGGCTTCCACCCCTTCTGATTC CTTACTATATGATGATGGGCTCTCAGAAGAGGAGACACCTCTCGTGGACTGTAATAACGCTCCCCTCCCTCGAACCCTT CCTTCCACATGGATTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTCTAGCAACACACACACACAC ACACAGTTTTCTCTTCTTTACTGTTCTCAGACTCTGTAACCCCATTACAGTGTTTCTTGTCTGAACGAAGCCAATCAAA ATTTGCTTGGAAGCTTCTTTTGGG
Citation	Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205190).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-36

stage 36

Nephric Ducts
Neural Plate/Tube

Entry 5

GEISHA Id	RET.Apostolova.2007	Data Source	Publication
Complete cDNA Template Probe	show CTGCCCGGAGCGCCTGTGGCCCAGGAAGATGCGCTCGGTGCGGGGGGCGGCCGGCCTCCTGCTGCTGTGCGGGGCTTCC TTTGGTCTGTACTTCCCCAGAAAGGAGTACTCAGAGAACGTCTACATTGACCAGCCAGCAGGTGCGCCGCTCCTACGCA TCCACGCCTTGAGGGATTCACATGGGAAACAGCCCACTTTCATCTGTGCCAGAAGTCTCATCATTTCTCGAGCAAGATC CCATGAAAATCACTGGTTTCAAATCAGAGAAAAAATGGGACTTCTCTACCTCAGCAAGAGCCTAGATAGAGAAGACTTT AACATGCTGTCTGTAGGAAACTGGATGCCATTATCAAAGGTGATGCTGTATGTCTTCCTCTCATCTCACCCTTTCCAAG AGAAGGAATGTGACTCTGCTACTCGTACCACAGTCGTCCTCTCTTTGATCAATGCTACTGCACCAGCTTGCAGTTCACT GTCAGCAAGGCAGCTTTGCTTCACAGAAATGGATCTCTCCTTTCACATCAAGGAGAATAAACCCCCTGGTACATTTCAT CAGCTCCAGTTACCCTCAGTTCATCATCTGTGTCAGAATCTCAGCATTACCTACAAACTGTTGGCAGCCGAAGGCCTGC CTTTTCGGTACAATGAGAACACCACTGGTGTGAGTGTAACACAGCGCCTAGATCGAGAGGAGAGAGAGAGATATGAGCT GATCGCCAAATGCACCGTGAGAGAAGGCTTCAGGGAAATGGAGGTTGAGGTGCCCTTCCTCGTCAACGTGTTAGATGAA GATGACTCTCCTCCCTTCCTTCCCAACGGCACTGACACTGCAGATGCTGTCGTGGAGTTCAATAGAAAAGAGGGAACTG TCCTTGCAACGCTAACTGTGTATGATGCAGACACCACACCTATTTATCCCCTTGAAAGCAGCAGAAAGAAATACACAGG AACAATAATTACTGACGATCCATGGATAAATGAAACATTTCGGGTGGAGCACATTTTCGATGAAATCCACTTCAGCCCA AATGGCAGCCAAGAGAGAGGAACTCAACACGAATACAAACTGGTACTGAATAAAAGTATTTCAGTCACAGAGCATCGTT CCTTCCAGTTGGATGTTTTGGTGAACGACACAGAATTTAATGGCCCAGAAAAATCAGTGATGCTTCATTTCAATGTCTC CATCCTTCCTGTCAGCATTCAGTTTCCAAACACAACTTATCGATTCACAGTAAACAGAAATGCTCAACGTTTTGCACAA ATAGGAAAAATCTGCATCGAAAACTGTATGAAGTTCCGTGGTGTGAACATCACCTACAAGTTACTGTCCCCCAATGTGA GCTGCTATGCTGTTGGCATACTTCAAGGCCGAGAAGACAAATATGGAAGCCTTTATGTGAATGATTCCTCTGTGCTACT TAGACCTGAATGCAAAGAAATACAATACACCGTTCAAGCTACAGACAAGCAGAGCAGGAAACATACCAAAACCCTTTTC ACTGTTGTATTAGAAGGAACTCTTTTTAAAAAAGAAGAGGACTGCCCTGACTCTTGTGCTATGAGTAAGCACCTTGCTG AATGTGAAGAGTGTGGTGGCCTGGGAGTGCTAACAGGAAGATGCCAGTGGAGACAGGGGAGTGGAAAAGGAATCACCAC AAACTATTCCACATGCACCCCAAGTATCAAGAACTTGCTCCAGATGGCCACCTGTGATATCGTGGAGAGCAAAGATCCA GCTATTTGCCCCCAGGACTGCACAAATGGAAATATTATTGGTGGTCATGGGAAAGGCACTGGAAACCTTGGAATTAAGT CAGGACATGGGATTTGTTACTGCTTCCCAAGACAGAACTGTTATTGTGAGAAAGATGATATCAAGGAGCAATTTTGTGA TGAAGTGTGCAAGACTGTGATAGCAGGGGCGGTGCTGTTGTCCTTCATCATCTCTGTGCTGCTTTCTTCCTATTTCATC CATCGCTACCACAAGAATTCTCCAAAGCCACCTATTGCCTCTGCAGAAATGACATTCCGGCGCCCAGCCCAGTCATATC CCATCAGTTATTCTTCTACTAATGTCCGTCGACCTTCTTTAGACTCCATGGAGAACCAGGTGTCTGTAGACACCTTTAA GATACCAGAAGATCCAAAGTGGGAATTCCCTCGGAAGAACCTGGTTCTAGGCAAGACTCTTGGAGAAGGAGAATTTGGG AAGGTTGTCAAGGCAACAGCTTTCAGACTCAAGGGAAGAGCTGGCTATACTACTGTGGCTGTGAAAATGCTAAAAGAAA ATGCTTCCCAGAGCGAGCTGCGAGATCTGCTGTCAGAGTTCAACCTTTTGAAACAGGTGAACCATCCTCACGTCATCAA ACTTTACGGAGCCTGCAGTCAAGATGGCCCGCTCTATTTAATTGTGGAATATGCTAAATATGGCTCCTTGCGCAGTTTT CTCAGGGAAAGCCGAAAAGTGGGACCAAGCTACGTGGGTAGTGATGGCAACAGAAATTCCAGTTACTTGGATAACCCCG ATGAGAGAGCCTTAACAATGGGAGATCTGATATCGTTTGCATGGCAGATATCACGAGGGATGCAGTACCTGGCAGAAAT GAAGCTCGTCCATCGTGACTTAGCAGCCAGGAATGTGCTGGTGGCAGAAGGGCGCAAAATGAAGATTTCTGATTTTGGC CTATCCCGTGATGTGTATGAAGAAGATTCCTATGTCAAGAGGAGCAAGGGTCGGATACCTGTTAAATGGATGGCCATAG AATCCCTGTTTGATCATATCTATACAACACAAAGTGATGTGTGGTCGTTTGGAGTTCTGCTCTGGGAGATTGTAACTCT GGGAGGCAATCCCTACCCAGGTATTGCTCCTGAAAGACTCTTTAACCTCCTAAAAACAGGCTACAGAATGGAGAGACCA GAAAACTGTAGTGAAGAAATGTACAACCTGATGTTGCGCTGCTGGAAGCAAGAACCAGATAAAAGGCCAACATTTGCTG AGATCAGCAAGGAACTGGAGAAAATGATGGTGAAGAGTAGGGACTACTTAGATCTTGCGGCTTCCACCCCTTCTGATTC CTTACTATATGATGATGGGCTCTCAGAAGAGGAGACACCTCTCGTGGACTGTAATAACGCTCCCCTCCCTCGAACCCTT CCTTCCACATGGATTGAAAACAAACTCTATGGTAGAATTTCACATGCATTTACTAGATTCTAGCAACACACACACACAC ACACAGTTTTCTCTTCTTTACTGTTCTCAGACTCTGTAACCCCATTACAGTGTTTCTTGTCTGAACGAAGCCAATCAAA ATTTGCTTGGAAGCTTCTTTTGGG
Citation	Apostolova G, Dorn R, Ka S, Hallböök F, Lundeberg J, Liser K, Hakim V, Brodski C, Michaelidis TM, Dechant G. Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci. 2007 Jul;35(3):397-408. Epub 2007 Apr 1.
Copyright	Copyright © 2007 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205190.1

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 44

Spinal Ganglia and Nerves

Entry 6

GEISHA Id	RET.Olivera-Martinez.2014	Data Source	Publication
Complete cDNA Template Probe	show GTCCTAACTGGATGGTTTCACACTCAGCGGCAAAATTTGTGGACAAGTTTGATAGCTAAAATTTTCTTTGTGAAAGGTA ATGGACTCACGAGGGGAACAAACATGCAAAGAATGGAAAGTCCATTGGCTCGTTCTTTGTACAGTCAACGACCTTTAGA TTGGCAAACTCTTTTATTGGTAGTTTTTAAAGTGTGTTATTCATGCTGAAATTGGTGATTTCCCCTTTCAGAAAGCATA TCAAGCTGGATAAGAGTTGTAGTTCCAGTACTTCTTTTTAGATTGCCACTGTGCATAGGGTTCCATTTGCCAACTTCTT GCTGCAAATGGCTCTGCACTTCATTCTCGTGGTTTTTCAGATTAACCATCCTGTATTACGACCTTATCGGATGGGAAAA TGTACTTGAACTGCTACTTTTATAGTGACTGTTTGCATACGACCGCTTGATCTAAGTAGGAAGCACAAACAGATGGAAG GGAGGGGGGAAACGCGCTCCCAAGCTACTGATCTTGCTGTCAGGTGAGAAGGGTTACAATGATGTTGGCACTAATGAAG CCTGTATCTTGGTTTAGAAGCAAACATTAAGTAACTCAATAGAGCACTTGAGATTCAACATTTGAAGTCTTGTAAAATG TATTGTCTTGTCTTAATGAGAAGAGAGTTTGTTTTATTAGTCTTAATTGCTCTTACCTTTAGCACAATGGAGAGAAATT TAATACAAGATATGCTGTATAGGCCGATGGCAATCAAGAGTGTTCATCTGACACGATTTATTTTCCATCATATACATCT TACTAATGTTAAAACGTATGACCTTGTACGATCACAGTTCCTTTTACGAGTTCAATTTGGACTGTATGGGAATTTTTAG TCTGAATTAAAGCGAAGAGATTTTGTTTGCGCC
Citation	Isabel Olivera-Martinez, Nick Schurch, Roman A Li, Junfang Song, Pamela A Halley, Raman M Das, Dave W Burt, Geoffrey J Barton, Kate G Storey. Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo. Development 2014 Aug;141(16):3266-76. Epub 2014 Jul 25. DOI: 10.1242/dev.112623.
Copyright	Copyright © 2014. Published by The Company of Biologists Ltd.
Comments	Authors indicated the probe was made from cDNA clone ChEST924e6. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number CR406864.1).