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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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YBX1
Y-box binding protein 1

Gene

Official Symbol	YBX1
Official Full Name	Y-box binding protein 1
CGNC ID	3598
also known as	NSEP1, YB1, nuclease-sensitive element-binding protein 1\|Y-box transcription factor\|YB-1, Nuclease sensitive element binding protein 1 , Y-box binding protein 1, Y-box transcription factor
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204414
Polypeptide	NP_989745
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4145

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	39377			FBgn0022959
Human	4904	ENSG00000065978		MIM:154030
Mouse	22608	ENSMUSG00000028639	All phenotypic alleles (5):Targeted, knock-out(4) Gene trapped(1)	MGI:99146
Xenopus	549431, 379054			480745
Zebrafish	795398	ENSDARG00000004757	ZDB-GENE-000629-3	ZFIN:ZDB-GENE-000629-3

Gene Ontology

Molecular Function	DNA binding, RNA binding
Biological Process	mRNA processing, regulation of transcription, DNA-templated, RNA splicing, transcription, DNA-templated
Cellular Component	cytoplasm, histone pre-mRNA 3'end processing complex

Links to other databases

Entrez Gene	386575
Ensembl Gene
KEGG	gga:386575

Entry 1

GEISHA Id	H32	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCTGCTTCAGACATCAGAAGCAACTATGAAGAAACATATGAAGATGTTGAGACTGAGAGTGATAATCCAGCAAAAGAGG AAGCAGAAAAACAAAAGAGATTTGGAAAGCTGTTTAAGATAGAAAAATTGAAACTGAAAAATACCAGGTTCAAGGAAAA CTTAAGGTTGTTTTCCATGTCGGTGCCAAATTTAGCGGATGTCTCCCAGGAGGACATGGTGTATGACGACGCTGAGACA GAGCAGAAAGACCCCAGAGAGAAAGATGACAAGCACAAAACGTGGATGCCAAAATTCCTGATGGCGAAAGAAGCAAAGG ACCGACGGAAAAGCAGTGACGATGTTGAAAGAAGTATCTTTAAAGTCAAGAAGAGCAATGCAGAAAAAAATAAGATGGA AAAAGAAGAGAAGATATTTAGAGAAACATTTCTGTATGACAAGGAGATCAGAGTCATCAACACAGCAACCGCTGCATGC TCCATCCCCAGCAAGAGGAGAGCCGACCTCCCGCTCACAGCTGGAGAACAGCTGGATGTGATCGATGTCACCGAGGGCA GCGCAGTGATATGCCGCAATTCAGAGGGCAGATATGGGTATGTCCTAGTGGAGTACTTGAACTTCAAGCAGTACTGACC GCCCCGGAGCATCCCCAACGTGCTGTTCTGAGCCTGGGAGAGCCTGTGTTTGTCAATGTGGGGAGCTGATGCCTATGTA AATAAAGCTTTATTTTTTACACTTAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTA
Reverse cDNA Template Probe	show AGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGTCGTAACTTCAACTACAGACGCAGACGCCCAGAG AACCCTAAACCACAAGATGGCAAAGAGACGAAGACAGCCGAACCACCAGCTGAGAACACGTCCGCTCCCGAGGCCGAGC AGGGCGGGGCTGAGTAAATACCGGCTTAACATTTTTACCATCATCCGGTTTAGTCATCAAAGAAAAGACTTAAGAAATG AAGAAGAAAAGAAAATGAAATTCCAGCAATAAGAAATGAACAAAAGAATTGGAACTGAAGACCTTAAGTGCTTGCTTTT TGCTGTTGACCAGATTACTAGAACTATTTGCATTATTTATGCAGCATGGGGTTTTTATTATTTTTACCTAAAGAAGTCT CCTTTTGGAAACAATAAACACGTTTTTTAAAAGTCTGTTTTTTCTCAATACACCTTTAAAGGTTTTTAAATTGTTTCAT ATCTGGTCAAGTTGAGATTTTTAAGAACCTCATTTTTAATTTGTATGAAAAGTACGCCTGATTTTTTCAAGTCAAACTG CAAGCATCTGTTAATAAAGGTCTTAAAGTTAAAAAAAAAAAAAAAAAAAAAAAA
Comments	no specific expression detected, unlabeled or low ubiquitous

Stage

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13-15

stage 15

Unlabeled

Entry 2

GEISHA Id	ChEST68a10	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGGGAGCGGAGAGCGGAGCTCAGCGAGCCCGGAGCAGGGAGCAGCCCCCCCACGGCCGGCCTCAGTCACCATCACACCG CGGGAGGCGGCGCAAACAGCCAGTCACCACCACCGTCCGCACCGAACAGCCGCCGCCATGAGCAGCGAGGCCGAGACCC AGCCGCCCGCCGCCCCCGTCCCCGCGGCGGCCCCCGCCGCCGCCCCCGCCGACTCCAAACCTAACGGCGGCAGCGGGAA CGGGAGCAGCGGCCTGGCCTCGGCGGCGCCTCCCGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACA GTGAAATGGTTCAACGTACGGAACGGTTACGGCTTCATCAACAGGAATGACACCAAGGAAGATGTGTTTGTCCATCAGA CTGCCATAAAGAAGAATAACCCCAGGAAGTACCTCCGCAGCGTAGGAGATGGAGAGACCGTGGAGTTTGATGTGGTTGA AGGAGAGAAGGGTGCGGAGGCAGCGAATGTGACAGGGCCTGGTGGCGTTCCAGTGCAAGGCAGCAAATACGCAGCAGAC CGTAACCATTACAGACGATATCCGCGTCGCAGGGGTCCTCCACGCAACTACCAGCAAAACTACCAGAACAGTGAGAGTG GGGAGAAGAACGAAGGAGCAGAGAACATCCCGGAAGGCCAAGCCCAGCAGCGCCGTCCCTATCGCAGGCGGCGGTACCC ACCTTACTACATGCGTAGGCCCTACGGGCGTCGACCACAATATTCCAACCCTCCCGTGCAGGGAGAGATAGTGGAGGGT GCTGACAACCAAGGTGCAAGAGAACAAGGCAGACCAGTCAGGCAGAACATGTATCGAGGGTACAGACCACGATTCGGCA GGGGTCCTCCTCGTCAAAGACAGCCTAGAGAGGATGGAAACGAAGAAAGATTAAGAGACCCAGGAGATGAGACCCAAGG TCAGCA
Comments	No specific expression detected stages 11-21.

no images

Entry 3

GEISHA Id	YBX1.Bandyopadhyay.2008	Data Source	Publication
Complete cDNA Template Probe	show CGGGAGCGGAGAGCGGAGCTCAGCGAGCCCGGAGCAGGGAGCAGCCCCCCCACGGCCGGCCTCAGTCACCATCACACCG CGGGAGGCGGCGCAAACAGCCAGTCACCACCACCGTCCGCACCGAACAGCCGCCGCCATGAGCAGCGAGGCCGAGACCC AGCCGCCCGCCGCCCCCGTCCCCGCGGCGGCCCCCGCCGCCGCCCCCGCCGACTCCAAACCTAACGGCGGCAGCGGGAA CGGGAGCAGCGGCCTGGCCTCGGCGGCGCCTCCCGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACA GTGAAATGGTTCAACGTACGGAACGGTTACGGCTTCATCAACAGGAATGACACCAAGGAAGATGTGTTTGTCCATCAGA CTGCCATAAAGAAGAATAACCCCAGGAAGTACCTCCGCAGCGTAGGAGATGGAGAGACCGTGGAGTTTGATGTGGTTGA AGGAGAGAAGGGTGCGGAGGCAGCGAATGTGACAGGGCCTGGTGGCGTTCCAGTGCAAGGCAGCAAATACGCAGCAGAC CGTAACCATTACAGACGATATCCGCGTCGCAGGGGTCCTCCACGCAACTACCAGCAAAACTACCAGAACAGTGAGAGTG GGGAGAAGAACGAAGGAGCAGAGAACATCCCGGAAGGCCAAGCCCAGCAGCGCCGTCCCTATCGCAGGCGGCGGTACCC ACCTTACTACATGCGTAGGCCCTACGGGCGTCGACCACAATATTCCAACCCTCCCGTGCAGGGAGAGATAGTGGAGGGT GCTGACAACCAAGGTGCAGGAGAACAAGGCAGACCAGTCAGGCAGAACATGTATCGAGGTTACAGACCACGATTCCGCA GCTTGACTTTCAGGGGTCCTCCTCGTCAAAGACAGCCTAGAGAGGATGGAAACGAAGAAGATAAAGAGAACCAAGGAGA TGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGTCGTAACTTCAACTACAGACGCAGACGCCCAGAGAACCCT AAACCACAAGATGGCAAAGAGACGAAGACAGCCGAACCACCAGCTGAGAACACGTCCGCTCCCGAGGCCGAGCAGGGCG GGGCTGAGTAAATACCGGCTTAACATCTCTACCATCATCCGGTTTAGTCATCAAAGAAAAGACTTAAGAAATGAAGAAG AAAAGAAAATGAAATTCCAGCAATAAGAAATGAACAAAAGAATTGGAACTGAAGACCTTAAGTGCTTGCTTTTTGCTGT TGACCAGATTACTAGAACTATCTGCATTATCTATGCAGCATGGGGTTTTTATTATTTTTACCTAAAGAAGTCTCCTTTT GGAAACAATAAACACGTTTTTTAAAAGTCTGTTTTTTCTCAATACACCTTTAAAGGTTTTTAAATTGTTTCATATCTGG TCAAGTTGAGATTTTTAAGAACCTCATTTTTAATTTGTATGAAAAGTACGCCTGATTTTTTCAAGTCAAACTGCAAGCA TCTGTTAATAAAGGTCTTAAAGTT
Citation	Bandyopadhyay A, Kubilus JK, Crochiere ML, Linsenmayer TF, Tabin CJ. Identification of unique molecular subdomains in the perichondrium and periosteum and their role in regulating gene expression in the underlying chondrocytes. Dev Biol. 2008 Sep 1;321(1):162-74. doi: 10.1016/j.ydbio.2008.06.012. Epub 2008 Jun 16.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204414.1