GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

HIVEP3
human immunodeficiency virus type I enhancer binding protein 3

Gene
Official SymbolHIVEP3
Official Full Namehuman immunodeficiency virus type I enhancer binding protein 3
CGNC ID53294
also known astranscription factor HIVEP3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_425767
PolypeptideXP_425767
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human59269ENSG00000127124MIM:606649
Mouse16656ENSMUSG00000028634All phenotypic alleles (2):Targeted, knock-out(2) MGI:106589
Xenopus100489803, 432339482556
Zebrafish568037ENSDARG00000037154ZDB-GENE-081029-2, ZDB-GENE-100922-42ZFIN:ZDB-GENE-081029-2, ZFIN:ZDB-GENE-100922-42
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428208
Ensembl Gene
KEGGgga:428208

Entry 1

GEISHA Idpat.pk0042.a6Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCAGCAGCAGAAAAGAGTGAAAGAGGAGGAGGTGTCAGAAGCAGAGGAGAAGTTGGAAGTGGTGAAGCCACCCAGTGCA
ATAGAGGAAGGGAAAAAGCAGGATAAAGCTCACTTTCTTACCGAAAGCCAAGGCAGGGTTGAGGTTGAAACACCACCTA
GTTTGTCCTTAGAGCAGTCGGAGCTAAAGGAAACCCCGAGTACTTTGCAACAAGCTGTGTCCCGGTCCGGTTCTCCAAG
CTTTGAGGCGCTGGAGGAGTATCAGCAGCCAGCTGGCAAGCAGCCCCTTGGCAAGGCACCTTTACAAAGCGTGAAGAAA
GAAGACTCCAAAGAGCCAGTGGAGCAGCCTCCACCAAGCCCTCCAAGCCCTGCACCTCTGTCCGAGGTCCCTTCAAGTG
CAATGAAGTCTCGAGAAGGTACGGATATGAAGAAGGTACTTCAGTTCCCCAGTCTCCACACAACCACTAATGTCAGTTG
GTGCTATTTAAACTACATAAAGCCAAATCACATCCAGCAAGTCGACCGGCGGTCTTCAGTGTATGCCAGCTGGTGTATT
AGCTTGTATAACCCCAACCTTCCGGGTATATCCACTAAAGTCGCCCTGTCCCTCCTGAGGTCCAAGCAGAAGGTGAGCA
GGGAAACCTACACCATGGCTACTGCTCCACGGCCAGAGGCAGGCAGGCTTGTCCCGTCCAGCTCCAGGAAGCCCAAAAT
GACAGAGGTAATGCAATCCTATATATTTCTCCTCATCTATTTGGATACATGGGAAGAGGGGGACGAGGGATGGGGAATT
GCTGCTGTTAGTTTAATAGGAATTTGTTCATCCTTTTCGCAGTCTGGTAAGTTCTCAGTGAG
Commentsno specific expression detected stages 4, 12, 16, 20, 23.
no images

Entry 2

GEISHA Idpgn1c.pk019.j13Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GACCCACGCGTCCGCCCACGCGTCCGCCAAAGGGAATCTGACTAAGCATATGAAGTCAAAAGCCCACAGCAAAAAATGT
CAGGAGATGGGCGTGTTGGTATCTTCACTGGTGGATCTGGAAGCCGAAGAAGGAACCAGTGAAGACCTATTCCAGGACT
CTGAGGGGCGGGAGGGATCTGAGCCTATTGAGGAACACCAGTTTTCAGACCTAGAGGAATCTGATGATGATGATGACAA
CGAGGATGATGAAGACGAGGAGGAAGAGGAGAGCCAAGATGAACCACCTTTAAAGCTGCCGGAAGCCAAACACCCCACC
CCACTGATGCACTCTTCAGGTGGCTCTCCGACTTCTCAAGAGGAAGGCACAGAAACAGCATCGTCCTTAGCCCAAGAAA
CTGCTTCCAGCAGCCAGAAAGTCGGTGAAGGCCAGCAGGGCTCCTCCTGTGGGCTGGAAACCAGGTGGTCAGCAGACAG
CAGCGACATCGCCGTGTGCCACAGCATCCTGAGTCTCCACAGACCAGCTCTGACTTCCACCGAACAATTGGCTTCTGCT
GAAAGAGAGTCTGTCACCAGGCCACCCATGTCCCTAGCCATGGAACTGTCAGCCTCAAAAGACACCTCCCCAAGGAAAA
GGTGGTCTCCGAGCCAGGACTCCAGCAGAGCTGGCGGCAGCAGCAGACCAATGCTAGCGAGAAAGCATCTGTTAACCAA
AAATGAAACTTCACCCAAACGGTTTTCACCCACCGGGGAGATGTCTCCTCTGAGGTGCCTGTCCCCAGGGAGAGGGCTG
TCCCCGTGCCCACGTGTCTCTCCCAGGAGGGAAGCATCCCCGCTGCGGTGCGC
Commentsno specific expression detected stages 4-23.
no images

Entry 3

GEISHA IdHIVEP3.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TCGTCACACACAGGTGAGAGGCCGTACCCTTGCATTCCATGTGGCTTTTCTTTTAAGACTAAGAGCAATTTGTATAAAC
ATAGGAAATCTCATGCTCATCGAATAAAAGCTGGGCTGGCCTCAGGGATAGGAGCAGAGATGTATCCGTCAAGCTTGGA
AATGGAGAGGATTGGTGGGGAGGACTTTGAGGAGCCAACAGAAGGAGAAAGCACAGATTCGGAGGAGGAGACGGGAGCG
ATGTCGGGTCACCCTGCAGAACTCTCCCCCAGGCAGAAGCACACCCTGCTGTCCAGCAGCCTGCTGAGCGCCGGGAGCC
AAGGCTCCAGCCACGACCGCTGTTCCCTGTCCCATTCCAGTATGTCTCAGTCGCTCGAGGACAGCAGCCAGTTTGCAGA
GCCGCCATCTGACCAAGCTCTGAGCCATAAATCGGAAGATACCCACACAATAAAGCAGAAGCTCGCACTCCGCTTAAGT
GAACGGAAGAAGGTCATAGATGAACAAGCTTTCCTGAGCCCGGGGAGTAAAGGAAGTACTGAGTCAGGCTACTTCTCCA
GGTCGGAAAGTGCAGAGCAGCAGATCAGCCCCCAAATACCAATGCAAAATCTTATGCAGAAATTATTTTGGGAAATGTG
GTAGAACTTGGGCAAAGGACTGCAATGTTGTCTACAAACACAACGCAGGGTGGTTCCGCATCTCTCTACTGAAGAGAAA
CCCAGTTATGGGTACCATTGTCTGTGCCTAGAACACAGGTTATTGAACACATCACTAAGCTAATTACAATTAATGAAAG
CCGGTGTAGATACCAAGTGAAATAGATAGGGTAAAGCCTAGAAGGAGGCTCTTATCTAGACGTAGCAGCATTGAATCTC
C
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Pellucida
area pellucida
1-3
stage 3
Epiblast
Primitive Streak
anterior primitive streak / most epiblast
4-6
stage 5
Early Mesoderm
Epiblast
Head Process
Hensen's Node
Paraxial Mesoderm
prechordal mesendoderm / head process / Hensen's node / weaker in mesoderm and central epiblast
7-8
stage 8
  
all
 
  

Mouse

EmageMGI:106589
EurexpressMGI:106589
MGI GXDMGI:106589

Frog

Xenbase482556

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081029-2, ZDB-GENE-100922-42
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona